mRNA_2287 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129928
Unique NamemRNA_2287
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129928 vs. uniprot
Match: A0A835YYZ0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ0_9STRA)

HSP 1 Score: 352 bits (902), Expect = 1.410e-122
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 
Query:    1 IDLSHSAVAKVEYLRALLEGGFSPLPRDESGRLILPPDLKADLLKPILAFASATDKPMYLLTKLPTSANVTGLLHCYDFAYGVGLAVADLDDIHSRLTDVKDTTERLARKTYEHHSNRDGRCAARNAAAELCLGLAADVFDVQDRRTQQKIYSRVLFILSHSATFHRRISHHVLTVARR 537
            IDLSHSAVAKVEYLRALLEGGFSPLPRDESGRLILPPDLKADLLKPILAFASATDKPMYLLTKLPTSANVTGLLHCYDFAYGVGLAVADLDDIHSRLTDVKDTTERLARKTYEHHSNRDGRCAARNAAAELCLGLAADVFDVQDRRTQQKIYSRVLFILSHSATFHRRISHHVLTVARR
Sbjct:    1 IDLSHSAVAKVEYLRALLEGGFSPLPRDESGRLILPPDLKADLLKPILAFASATDKPMYLLTKLPTSANVTGLLHCYDFAYGVGLAVADLDDIHSRLTDVKDTTERLARKTYEHHSNRDGRCAARNAAAELCLGLAADVFDVQDRRTQQKIYSRVLFILSHSATFHRRISHHVLTVARR 179
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BLAST of jgi.p|Trimin1|129928 vs. uniprot
Match: A0A7S1W5K9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1W5K9_ALECA)

HSP 1 Score: 87.0 bits (214), Expect = 9.090e-18
Identity = 61/170 (35.88%), Postives = 95/170 (55.88%), Query Frame = 1 
Query:   25 AKVEYLRALLEGGFSPLPRDESGRLILPPDLKADLLKPILAFASATDKPMYLLTKLPTSANVTGLLHCYDFAYGVGLAVADLDD--IHSRLTDVKDTTERLARKTYEHHSNRDGRCAARNAAAELCLGLAADVFDVQDRRTQQKIYSRVLFILSHSATFHRRISHHVLTV 528
            AKV +L +LL        ++E G  ++  D    L++ +L F S+ D  M+L TKLP +++   +L   DF      AV  + D    + L DVKD  +R+ ++     S    R  ARNAAAEL +GL +  +D+ + R +Q++Y+ VLF++SHS TF  R+ HH+L V
Sbjct:   43 AKVPFLDSLLADRIGTK-KNEHGEPVI--DRDPALVRAVLEFVSSGDA-MHLFTKLPKASSAKDMLVELDFFCVEPPAVRPISDKSFKTSLKDVKDEYQRVCKRGPIEKSYSANRFGARNAAAELAVGLESATYDLTNHRIRQELYNSVLFVISHSRTFGPRMRHHILGV 208
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129928 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YYZ0_9STRA1.410e-122100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S1W5K9_ALECA9.090e-1835.88Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:390800..391336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129928|gw1.5.12.1
Hectar predicted targeting categoryother localisation
TranscriptId130250
TrackFilteredModels1
ProteinId129928
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129928gene_2287Tribonema minus UTEX_B_3156 geneContig_5 390800..391336 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2287_1exon_2287_1Tribonema minus UTEX_B_3156 exonContig_5 390800..391336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2287CDS_2287Tribonema minus UTEX_B_3156 CDSContig_5 390800..391336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129928Trimin1|129928|gw1.5.12.1Tribonema minus UTEX_B_3156 polypeptideContig_5 390800..391336 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2287 ID=mRNA_2287|Name=jgi.p|Trimin1|129928|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_5:390800..391336- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGACTTATCGCACTCCGCCGTGGCGAAGGTGGAATATCTGCGGGCTCT
GCTGGAGGGTGGATTCTCGCCGCTGCCCCGGGATGAAAGCGGAAGATTGA
TTCTCCCGCCAGATCTGAAAGCCGACCTTCTGAAGCCCATCTTGGCCTTC
GCGAGCGCGACCGACAAGCCCATGTACCTGCTGACGAAGCTGCCTACCAG
CGCAAATGTGACGGGACTGCTGCATTGCTACGACTTCGCATACGGGGTGG
GGCTGGCTGTGGCTGACCTGGACGACATCCACTCACGCCTCACAGATGTC
AAGGACACAACCGAGAGGTTAGCGAGGAAGACTTACGAGCATCACAGCAA
CCGGGATGGGCGCTGCGCCGCCCGCAACGCAGCGGCGGAGCTGTGCCTGG
GGCTTGCGGCGGACGTTTTCGACGTGCAGGACCGCCGCACCCAGCAGAAA
ATCTACTCCAGGGTGCTGTTTATCCTGTCCCACTCTGCCACGTTTCACCG
CCGCATCAGCCACCACGTGCTGACGGTCGCACGGCGC
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protein sequence of jgi.p|Trimin1|129928

>Trimin1|129928|gw1.5.12.1 ID=Trimin1|129928|gw1.5.12.1|Name=jgi.p|Trimin1|129928|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=179bp
IDLSHSAVAKVEYLRALLEGGFSPLPRDESGRLILPPDLKADLLKPILAF
ASATDKPMYLLTKLPTSANVTGLLHCYDFAYGVGLAVADLDDIHSRLTDV
KDTTERLARKTYEHHSNRDGRCAARNAAAELCLGLAADVFDVQDRRTQQK
IYSRVLFILSHSATFHRRISHHVLTVARR
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mRNA from alignment at Contig_5:390800..391336-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2287 ID=mRNA_2287|Name=jgi.p|Trimin1|129928|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_5:390800..391336- (Tribonema minus UTEX_B_3156 )
ATCGACTTATCGCACTCCGCCGTGGCGAAGGTGGAATATCTGCGGGCTCT
GCTGGAGGGTGGATTCTCGCCGCTGCCCCGGGATGAAAGCGGAAGATTGA
TTCTCCCGCCAGATCTGAAAGCCGACCTTCTGAAGCCCATCTTGGCCTTC
GCGAGCGCGACCGACAAGCCCATGTACCTGCTGACGAAGCTGCCTACCAG
CGCAAATGTGACGGGACTGCTGCATTGCTACGACTTCGCATACGGGGTGG
GGCTGGCTGTGGCTGACCTGGACGACATCCACTCACGCCTCACAGATGTC
AAGGACACAACCGAGAGGTTAGCGAGGAAGACTTACGAGCATCACAGCAA
CCGGGATGGGCGCTGCGCCGCCCGCAACGCAGCGGCGGAGCTGTGCCTGG
GGCTTGCGGCGGACGTTTTCGACGTGCAGGACCGCCGCACCCAGCAGAAA
ATCTACTCCAGGGTGCTGTTTATCCTGTCCCACTCTGCCACGTTTCACCG
CCGCATCAGCCACCACGTGCTGACGGTCGCACGGCGC
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Coding sequence (CDS) from alignment at Contig_5:390800..391336-

>mRNA_2287 ID=mRNA_2287|Name=jgi.p|Trimin1|129928|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=537bp|location=Sequence derived from alignment at Contig_5:390800..391336- (Tribonema minus UTEX_B_3156 )
ATCGACTTATCGCACTCCGCCGTGGCGAAGGTGGAATATCTGCGGGCTCT
GCTGGAGGGTGGATTCTCGCCGCTGCCCCGGGATGAAAGCGGAAGATTGA
TTCTCCCGCCAGATCTGAAAGCCGACCTTCTGAAGCCCATCTTGGCCTTC
GCGAGCGCGACCGACAAGCCCATGTACCTGCTGACGAAGCTGCCTACCAG
CGCAAATGTGACGGGACTGCTGCATTGCTACGACTTCGCATACGGGGTGG
GGCTGGCTGTGGCTGACCTGGACGACATCCACTCACGCCTCACAGATGTC
AAGGACACAACCGAGAGGTTAGCGAGGAAGACTTACGAGCATCACAGCAA
CCGGGATGGGCGCTGCGCCGCCCGCAACGCAGCGGCGGAGCTGTGCCTGG
GGCTTGCGGCGGACGTTTTCGACGTGCAGGACCGCCGCACCCAGCAGAAA
ATCTACTCCAGGGTGCTGTTTATCCTGTCCCACTCTGCCACGTTTCACCG
CCGCATCAGCCACCACGTGCTGACGGTCGCACGGCGC
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