mRNA_10444 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142697
Unique NamemRNA_10444
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: A0A835Z0G6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G6_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.270e-68
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK
Sbjct:    1 SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 98          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: A0A835YSA2_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.150e-39
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    1 SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            ++  FL+KTF+IFSNP F ++  CGW   GD ++I  + +F+  VLPQYFKH NFQSFVRQLNMYNF KTV DPT+GEF+H  FR+G   +LHLIKRK
Sbjct:    3 NIPGFLTKTFEIFSNPNFTSQ--CGWGVNGDTIVIFKIAEFASEVLPQYFKHSNFQSFVRQLNMYNFHKTVQDPTHGEFQHQYFRKGRPDLLHLIKRK 98          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: W7TL19_9STRA (Hsf-type dna-binding domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL19_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.610e-33
Identity = 54/98 (55.10%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    1 SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            ++  FL+KT++IFS+ + +   +CGW A+GD ++I  + +F+ RVLP+YFKH NFQSFVRQLNMY+F KTV DP++GEF+H  FR+G   +L LIKRK
Sbjct:  124 TIPGFLTKTYEIFSSAEHK--DLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRK 219          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: A0A835YWH8_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.740e-33
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            ++  FL+KT++IFSN  F    +CGW   GD ++I+ + +F+  VLPQYFKH NFQSFVRQLNMYNF KTV DPT+GEF+H  FR+G   +L LIKRK
Sbjct:   70 NIPGFLTKTYEIFSNSSFSK--LCGWGVNGDTIVIYKIPEFASEVLPQYFKHSNFQSFVRQLNMYNFHKTVQDPTHGEFQHQYFRKGRPDLLTLIKRK 165          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: A0A4D9CUD5_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUD5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.110e-31
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    1 SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            ++  FL+KT++IFS+P+ +   +CGW A G  ++I  + +F+ RVLP+YFKH NFQSFVRQLNMY+F KTV DP++GEF+H  FR+G R +L LIKRK
Sbjct:   79 TIPGFLTKTYEIFSSPEHK--DLCGWGAGGGTIVIKKVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRRDLLPLIKRK 174          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: A0A7S2SUP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUP5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.690e-30
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    4 VSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            V  FL+K F+IFSN  F    +CGW   G  V+IH + DF+  VLP+YFKH N+ SFVRQLNMY+F KTVA+P   EF HP F+RG   +L LIKRK
Sbjct:   53 VPGFLTKAFEIFSNKAFL--DLCGWGRNGQTVVIHRISDFAAAVLPKYFKHSNYASFVRQLNMYDFHKTVANPQIAEFHHPYFQRGRPDLLQLIKRK 147          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: A0A7S2UUB9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUB9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.600e-30
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    4 VSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            +  FL KTFD+FSNP+F     C W  KGD+++I  + +FS  VLP++FKH NFQSFVRQLNMY+F KTV D T+ EF+H  FR+G   +L+LIKRK
Sbjct:   38 LPGFLRKTFDVFSNPEFSE--YCDWGPKGDSILIKKVPEFSANVLPKFFKHSNFQSFVRQLNMYDFHKTVQDSTHVEFQHTYFRKGRPDLLYLIKRK 132          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: A0A3F2S375_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S375_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.490e-29
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    4 VSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            + AFLSKTF+IFS P+F +  ICGW+A GD +I+  L  F   VLP++FKH NF SFVRQLN+Y F KTV D    EF+HP F+RG   +LH IKRK
Sbjct:   27 LPAFLSKTFEIFSMPEFSS--ICGWNANGDTIIVSQLETFVSMVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRGRPDLLHHIKRK 121          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: D7FNC1_ECTSI (Putative heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC1_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.300e-29
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            +V+ FL K + IF  P +    +CGW   G+ V+I    +F+ R+LP +F H N QSFVRQLNMYNF+K + DP++GEFKH LFR+G  H+LH IKRK
Sbjct:   14 NVAGFLVKAYQIFDTPAWS--DLCGWGEGGNTVVIRKQVEFAQRILPLFFNHSNLQSFVRQLNMYNFRKVMQDPSSGEFKHDLFRKGNEHLLHKIKRK 109          
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Match: A0A3R7JRK0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JRK0_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.130e-29
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    4 VSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK 294
            + AFLSKTF+IFS P+F +  ICGW+A GD +I+  L  F   VLP++FKH NF SFVRQLN+Y F KTV D    EF+HP F+RG   +LH IKRK
Sbjct:   27 LPAFLSKTFEIFSMPEFSS--ICGWNANGDTIIVSQLETFVSMVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRGRPDLLHHIKRK 121          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142697 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0G6_9STRA1.270e-68100.00HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A835YSA2_9STRA1.150e-3961.22HSF-type DNA-binding-domain-containing protein n=1... [more]
W7TL19_9STRA5.610e-3355.10Hsf-type dna-binding domain containing protein n=1... [more]
A0A835YWH8_9STRA8.740e-3358.16HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A4D9CUD5_9STRA2.110e-3156.12HSF_DOMAIN domain-containing protein n=1 Tax=Nanno... [more]
A0A7S2SUP5_9STRA1.690e-3056.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2UUB9_9STRA4.600e-3056.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3F2S375_9STRA1.490e-2957.73HSF_DOMAIN domain-containing protein n=1 Tax=Phyto... [more]
D7FNC1_ECTSI2.300e-2952.04Putative heat Shock transcription factor n=1 Tax=E... [more]
A0A3R7JRK0_9STRA4.130e-2957.73Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_49contigContig_49:226923..227779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142697|gw1.49.54.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04212,ko05134,map04212,map05134
KEGG koko:K09414
Descriptionheat shock factor
COG categoryK
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,3Q91H@4776|Peronosporales
Evalue1.78e-29
Seed ortholog272952.HpaP803356
Hectar predicted targeting categoryother localisation
TranscriptId143019
TrackFilteredModels1
ProteinId142697
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142697gene_10444Tribonema minus UTEX_B_3156 geneContig_49 226923..227779 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10444_1exon_10444_1Tribonema minus UTEX_B_3156 exonContig_49 226923..226963 +
exon_10444_2exon_10444_2Tribonema minus UTEX_B_3156 exonContig_49 227527..227779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10444CDS_10444Tribonema minus UTEX_B_3156 CDSContig_49 226923..226963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142697Trimin1|142697|gw1.49.54.1Tribonema minus UTEX_B_3156 polypeptideContig_49 226923..227779 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10444 ID=mRNA_10444|Name=jgi.p|Trimin1|142697|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_49:226923..227779+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGTGTGTCGGCCTTCCTAAGCAAGACCTTCGACATCTTCAGCAACCCGCA
GTTTCAGGCGGAGGGCATCTGCGGCTGGAGCGCCAAGGGCGACGCCGTCA
TCATACACAACCTGCGCGACTTCAGCGATCGGGTGCTCCCGCAGTACTTC
AAGCACGGCAACTTCCAGTCCTTCGTGCGCCAGCTCAACATGTACAACTT
CAAGAAGACGGTCGCGGACCCCACTAACGGCGAGTTCAAGCACCCGCTGT
TCCGCCGCGGCATGCGCCACGTCCTGCACCTGATCAAGCGCAAG
back to top

protein sequence of jgi.p|Trimin1|142697

>Trimin1|142697|gw1.49.54.1 ID=Trimin1|142697|gw1.49.54.1|Name=jgi.p|Trimin1|142697|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
SVSAFLSKTFDIFSNPQFQAEGICGWSAKGDAVIIHNLRDFSDRVLPQYF
KHGNFQSFVRQLNMYNFKKTVADPTNGEFKHPLFRRGMRHVLHLIKRK
back to top

mRNA from alignment at Contig_49:226923..227779+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10444 ID=mRNA_10444|Name=jgi.p|Trimin1|142697|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=857bp|location=Sequence derived from alignment at Contig_49:226923..227779+ (Tribonema minus UTEX_B_3156 )
AGTGTGTCGGCCTTCCTAAGCAAGACCTTCGACATCTTCAGGTGAGGAGT GTTGGCAAGTCACCGTTCACAGTTTCAGGCAAGGCAACCGGTCCGGTCCG GAGCCTTAAACTTCATCTCCAGCAATTATTTCCAATGCAGAGGTGATGAC GCCTTTTGCGGACACGAAGTGAGATTTGCGTTGTGTCTGGGGGGGTGGGG CCAGTCGCATTTTATGAGCAGGTGCAAGTGGCAGCTGTGAACAGCGCACA GGCATTTGCATGTACCTGTCTGTTAGCATTAGAAGACACGCCCATTGAAG TCCTGGTGCAGTGGCAAGTCACCATTGACACCTCCACAGTACATGATCGC CATCAGCTGGGGCGTAGTGTTTGTGTGTGCTCACAGCTCGCCAGACTCGG CCCAGGGCACGAGGATGTCACCATAGCCACCGCTTATGATGCTCCAGGGC TGCCATCTGCTTCGAGGCGCCACTCGAGGTTGCGAGTCGCAGATCAGCTC TTCAGCCCCGCATGGCTGTGACAACTGACTTTGACTCGGACACAACTTCA AGCGTGACACTCCTCCGCACACCTCGCAATGCCGCCACCGTCGCTGCCCC GCAGCAACCCGCAGTTTCAGGCGGAGGGCATCTGCGGCTGGAGCGCCAAG GGCGACGCCGTCATCATACACAACCTGCGCGACTTCAGCGATCGGGTGCT CCCGCAGTACTTCAAGCACGGCAACTTCCAGTCCTTCGTGCGCCAGCTCA ACATGTACAACTTCAAGAAGACGGTCGCGGACCCCACTAACGGCGAGTTC AAGCACCCGCTGTTCCGCCGCGGCATGCGCCACGTCCTGCACCTGATCAA GCGCAAG
back to top

Coding sequence (CDS) from alignment at Contig_49:226923..227779+

>mRNA_10444 ID=mRNA_10444|Name=jgi.p|Trimin1|142697|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_49:226923..227779+ (Tribonema minus UTEX_B_3156 )
AGTGTGTCGGCCTTCCTAAGCAAGACCTTCGACATCTTCAGCAACCCGCA
GTTTCAGGCGGAGGGCATCTGCGGCTGGAGCGCCAAGGGCGACGCCGTCA
TCATACACAACCTGCGCGACTTCAGCGATCGGGTGCTCCCGCAGTACTTC
AAGCACGGCAACTTCCAGTCCTTCGTGCGCCAGCTCAACATGTACAACTT
CAAGAAGACGGTCGCGGACCCCACTAACGGCGAGTTCAAGCACCCGCTGT
TCCGCCGCGGCATGCGCCACGTCCTGCACCTGATCAAGCGCAAG
back to top