mRNA_10442 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|71461
Unique NamemRNA_10442
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: A0A835YQX8_9STRA (PCI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX8_9STRA)

HSP 1 Score: 397 bits (1020), Expect = 1.170e-139
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 3 
Query:   12 MAEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRKGVNSAKAAWKAEEVQQR 626
            MAEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRKGVNSAKAAWKAEEVQQR
Sbjct:    1 MAEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRKGVNSAKAAWKAEEVQQR 205
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: F0YEG3_AURAN (PCI domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEG3_AURAN)

HSP 1 Score: 188 bits (477), Expect = 4.470e-57
Identity = 98/195 (50.26%), Postives = 134/195 (68.72%), Query Frame = 3 
Query:   12 MAEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRKGVNSAKA 596
            MAEDG  A LEQ+CLLAK+AKGRA V +IQ+ ++ K+I+VFGELLAMP+VQ LRGTEH P+L LLE+FA+G YGD++A G A+P L+ A   KLR L++V+LA  S VV Y  +QE L V +VR +ED +++ +YAGLL  ++DQ +   RV     RDV+ + +  + A L+ WA    +    L +   SAKA
Sbjct:    1 MAEDGSQA-LEQFCLLAKSAKGRAVVGIIQQTLSSKRIYVFGELLAMPSVQALRGTEHAPHLDLLEIFAFGTYGDYRAKGDAMPPLTPAQLTKLRQLSLVSLARESAVVAYATMQEELAVDNVRDLEDAIIETIYAGLLSGKMDQMSAEFRVAKAAGRDVKLDAVGDLAAKLEAWAATAGQLSAELEENKASAKA 194
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: A0A7S2RP08_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP08_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.170e-56
Identity = 94/190 (49.47%), Postives = 135/190 (71.05%), Query Frame = 3 
Query:   12 MAEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRKGV 581
            MA+  G+A  E++CLLAK+ +GRA VALI++ ++ KK+FV GELLAM N+Q LRGTE E +LRLLELFAYG Y +++AA   LP+L+  M EKLR L++V+LA+T + V Y +LQ+ L +++VR +ED+++D +YAGL+  +LDQ  G L V+    RDVRPEE+  MI  L  W    ++ +  L K +
Sbjct:   18 MADGSGSATFERFCLLAKSQRGRAVVALIEQALSSKKVFVVGELLAMDNIQALRGTEFEAHLRLLELFAYGTYSEYQAAKDQLPELNSNMKEKLRALSIVSLAHTKKQVTYTELQQELAITNVRELEDLIIDTIYAGLVDGKLDQANGMLNVRSAVARDVRPEEVGEMIQKLTQWGSDMEQLIAALDKNM 207
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: A0A7S2CC19_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CC19_9STRA)

HSP 1 Score: 187 bits (475), Expect = 5.740e-56
Identity = 95/184 (51.63%), Postives = 129/184 (70.11%), Query Frame = 3 
Query:   12 MAEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALR 563
            MAE G  A LEQ+CLLAKTAK RA V LI++ + ++KIFVFGELL M N+Q LR TEH  YLRLLELFAYG Y  + A     P ++ A TEKLR L++V+LA+T + VPY  LQ  L +++VR +ED+++D +Y GL+  ++DQ  G L+V+   PRDV+PE++D+MI+ L  W    D  L+
Sbjct:    2 MAEGG--AALEQFCLLAKTAKSRAAVELIKQALTNRKIFVFGELLFMDNMQALRDTEHAEYLRLLELFAYGTYSQYLAQRDQYPDMNAAQTEKLRQLSIVSLAHTQKKVPYEVLQAELAINNVRELEDLIIDTIYTGLVTGKMDQTTGVLKVKSAVPRDVKPEDVDAMISKLTDWRDKCDAILK 183
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: A0A7S2UVG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVG8_9STRA)

HSP 1 Score: 180 bits (456), Expect = 7.640e-54
Identity = 92/184 (50.00%), Postives = 130/184 (70.65%), Query Frame = 3 
Query:   18 EDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGL 569
            + GGAA LE++ +LAK AKGRACVALIQ+V+ + ++FVFGELLA PNVQ L GTEHE +LRLLELFAYG Y D+     +LP+L+ A   KLR L++V+LA+ S+V+ Y +L + L + +VR +ED+V++ +Y GL+  +LDQ  G L+V  V  RDVRP E+  ++  L  W+  T   ++ L
Sbjct:    4 DGGGAADLERFVILAKNAKGRACVALIQQVLNNNRVFVFGELLASPNVQALAGTEHELHLRLLELFAYGTYSDYHENRSSLPELTPAQRTKLRQLSLVSLASASKVLRYEELMKELQLENVRELEDLVIETIYVGLVLGKLDQLGGVLKVSAVGARDVRPSEVPHLLHRLQHWSQVTQALVQEL 187
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: A0A4D9D7R0_9STRA (PCI domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7R0_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.160e-53
Identity = 93/189 (49.21%), Postives = 125/189 (66.14%), Query Frame = 3 
Query:   12 MAEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSS-VRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRK 575
            M  D GA  LEQ+ +LAK+AKG ACVALIQ+V++ +KI VFGELLAMPN++ LRG+EHEPYLRLLE+FAYG Y D++   G LP L+     KL+ LT+V LA     +PY  L   L +   VR +ED++++++Y G+L  RLDQR G  R++    RDVR E+ID M+  L  W    +  L  L +
Sbjct:    1 MNSDAGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHESIPYAVLFRELDIDGDVRELEDLIIESIYMGVLTGRLDQRGGLFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQ 189
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: A0A7R9UCJ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCJ6_9STRA)

HSP 1 Score: 177 bits (448), Expect = 6.560e-52
Identity = 92/182 (50.55%), Postives = 123/182 (67.58%), Query Frame = 3 
Query:   27 GAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLR 572
            G+  LEQ+  LAKTAKG ACVALIQ+V+   K+FVFGELL MPNVQ LRGTEH+PYLRLLELFAYG   D + A  ALP +S+A   KLR L++++ A T   + Y +L  AL V +VR +EDVV+DA+YA L+  +L+QR   +R+     RDVR +++ ++   L  W   T   L+ L+
Sbjct:   19 GSDALEQFVSLAKTAKGAACVALIQQVLNHPKVFVFGELLLMPNVQALRGTEHQPYLRLLELFAYGTMADAQGAKEALPTMSEAQEAKLRKLSILSAAQTQGTLDYDQLMPALQVDNVRDLEDVVIDAIYADLIDAKLNQRERVVRIHRCVARDVRSDDLSAIKEKLKAWNRNTSEVLQALK 200
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: A0A7S1XVC1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVC1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.770e-51
Identity = 94/186 (50.54%), Postives = 128/186 (68.82%), Query Frame = 3 
Query:   15 AEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLR 572
            A  GGA  LEQ+  LAKTAKGRACVALIQ+V+   K+FVFGELLAMPN+Q LR +EHEP+L+LLELFAYG  GD +     LP++++A   KLR LT++    +  V+ Y +L  + GV++VR +ED++++A+YAGLL  +L+QR   LRV    PRD+R  +I ++   L  W   T R L GL+
Sbjct:   84 ASAGGADALEQFVSLAKTAKGRACVALIQQVLNHPKVFVFGELLAMPNIQALRESEHEPHLQLLELFAYGNCGDSQ---DGLPEMTEAQVRKLRTLTLLTHCQSEGVLGYDQLMASTGVANVRELEDLIIEAIYAGLLDGKLNQRERVLRVSRCAPRDIRDSDIAAVALKLQRWHRNTQRVLTGLQ 266
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: A0A8K1FI89_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI89_PYTOL)

HSP 1 Score: 174 bits (442), Expect = 5.410e-51
Identity = 85/173 (49.13%), Postives = 126/173 (72.83%), Query Frame = 3 
Query:   18 EDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMW 536
            +D GA+ LEQ+ LLAK A+GRACVALIQ+ +++KK+FVF ELL MPNVQ L+GTEH+ Y +LLE+F +G Y D+ A    LP L+ A  +KLR LT ++LA  S++VPY  L + L V+++R +ED+++D +Y+GL+Q +LDQ++ +L V++   RD +  ++D MI  L  W
Sbjct:    4 DDAGASSLEQFTLLAKNARGRACVALIQQALSNKKLFVFRELLDMPNVQALKGTEHDSYFQLLEIFCFGKYRDYLAEKDVLPALNPAHIQKLRKLTTLSLAQKSKIVPYETLMKELDVTTIRELEDILIDTIYSGLVQGKLDQKSKSLIVKYAVGRDTQNADVDLMIEKLTNW 176
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BLAST of jgi.p|Trimin1|71461 vs. uniprot
Match: V9EG37_PHYPR (PCI domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=V9EG37_PHYPR)

HSP 1 Score: 171 bits (433), Expect = 1.190e-49
Identity = 87/170 (51.18%), Postives = 121/170 (71.18%), Query Frame = 3 
Query:   27 GAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMW 536
            GAAGLEQ+ LLAK A+GRACVALIQ+V+++KK+FVF ELL MPNV+ L+ +EH  +  LL +F++G Y D+ A    LP L+     KLR LTVV+LA+  + +PY  L + LGVS+VR VED+++D +Y+GL+Q +LDQ++    V++   RD R E+ID MI  L  W
Sbjct:    7 GAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGVSTVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNW 176
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|71461 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQX8_9STRA1.170e-139100.00PCI domain-containing protein n=1 Tax=Tribonema mi... [more]
F0YEG3_AURAN4.470e-5750.26PCI domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2RP08_9STRA1.170e-5649.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CC19_9STRA5.740e-5651.63Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UVG8_9STRA7.640e-5450.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9D7R0_9STRA2.160e-5349.21PCI domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7R9UCJ6_9STRA6.560e-5250.55Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XVC1_9STRA1.770e-5150.54Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A8K1FI89_PYTOL5.410e-5149.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
V9EG37_PHYPR1.190e-4951.18PCI domain-containing protein n=12 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_49contigContig_49:216367..220613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|71461|CE71460_43
BRITEko00000,ko00001,ko01000,ko03041,ko04121
KEGG Pathwayko03040,map03040
KEGG koko:K12180,ko:K12818
EC3.6.4.13
GOsGO:0000003,GO:0000338,GO:0000715,GO:0002009,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0008150,GO:0008152,GO:0008180,GO:0008283,GO:0008356,GO:0009653,GO:0009888,GO:0009987,GO:0010387,GO:0016043,GO:0016333,GO:0019538,GO:0019827,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030718,GO:0030727,GO:0031647,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0036099,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048729,GO:0048856,GO:0048869,GO:0050821,GO:0050896,GO:0051276,GO:0051301,GO:0051704,GO:0051716,GO:0060429,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090304,GO:0098727,GO:1901360,GO:1901564
Preferred nameCOPS7B
Descriptionprotein deneddylation
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3250@1|root,KOG3250@2759|Eukaryota
Evalue9.33e-58
Seed ortholog44056.XP_009038757.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome component (PCI) domain
Ec32 orthologEc-06_001170.1
TranscriptId71783
TrackFilteredModels1
ProteinId71461
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|71461gene_10442Tribonema minus UTEX_B_3156 geneContig_49 216367..220613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|71461Trimin1|71461|CE71460_43Tribonema minus UTEX_B_3156 polypeptideContig_49 216367..220602 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10442_4exon_10442_4Tribonema minus UTEX_B_3156 exonContig_49 216367..216522 -
exon_10442_3exon_10442_3Tribonema minus UTEX_B_3156 exonContig_49 218333..218434 -
exon_10442_2exon_10442_2Tribonema minus UTEX_B_3156 exonContig_49 219396..219596 -
exon_10442_1exon_10442_1Tribonema minus UTEX_B_3156 exonContig_49 220447..220613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10442CDS_10442Tribonema minus UTEX_B_3156 CDSContig_49 220447..220602 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10442UTR5_10442Tribonema minus UTEX_B_3156 five_prime_UTRContig_49 220603..220613 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10442 ID=mRNA_10442|Name=jgi.p|Trimin1|71461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=626bp|location=Sequence derived from alignment at Contig_49:216367..220613- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGAAACAACATGGCCGAAGATGGAGGAGCTGCTGGGCTGGAGCAGTAT
TGCCTCCTGGCTAAGACAGCCAAGGGCAGGGCCTGTGTGGCGCTGATCCA
GAAAGTCATGGCTGACAAGAAAATCTTTGTCTTTGGGGAGCTGCTGGCGA
TGCCCAACGTACAAGGGCTGCGCGGCACGGAGCACGAGCCGTACCTGCGT
CTGCTGGAGCTCTTTGCGTACGGCGTGTATGGCGACCACAAGGCCGCGGG
CGGAGCGCTGCCGCAGCTGAGCGATGCCATGACGGAGAAGCTGCGCATGC
TCACGGTCGTCGCGCTCGCCAACACGAGCCGCGTGGTGCCGTACGGCAAG
CTGCAGGAGGCGCTAGGGGTCTCGTCTGTGCGCGTGGTGGAGGACGTGGT
GCTGGACGCCATGTACGCGGGGCTGCTGCAGTGCAGGCTGGACCAGCGCG
CGGGGACCCTGCGCGTTCAGCACGTCACGCCGCGCGACGTGCGCCCGGAG
GAGATTGACAGCATGATAGCGACGCTGGACATGTGGGCGGGGGCGACGGA
CCGCGCGCTGAGGGGGCTGCGGAAGGGCGTCAACAGCGCAAAAGCGGCGT
GGAAGGCGGAGGAGGTGCAGCAAAGG
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protein sequence of jgi.p|Trimin1|71461

>Trimin1|71461|CE71460_43 ID=Trimin1|71461|CE71460_43|Name=jgi.p|Trimin1|71461|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
MAEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNV
QGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVV
ALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTL
RVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRKGVNSAKAAWKAE
EVQQR
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mRNA from alignment at Contig_49:216367..220613-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10442 ID=mRNA_10442|Name=jgi.p|Trimin1|71461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4247bp|location=Sequence derived from alignment at Contig_49:216367..220613- (Tribonema minus UTEX_B_3156 )
ATCGAAACAACATGGCCGAAGATGGAGGAGCTGCTGGGCTGGAGCAGTAT
TGCCTCCTGGCTAAGACAGCCAAGGGCAGGGCCTGTGTGGCGCTGATCCA
GAAAGTCATGGCTGACAAGAAAATCTTTGTCTTTGGGGAGCTGCTGGCGA
TGCCCAACGTACAAGGGGTGAGCACGCGAGTTTGCAGATGCATAGATGAT
GCAAAAGCTGCCACGCAAAAATGTTGTAGAGGCTGATGGTGATAGAACCA
GTGATCCTTGAGACATGTGCTCAGGCTTCCAGGTCTTCAACTTATTCGCT
TTGAGGTTTACCATGATACTGCATCACACTTGCGATATGCAGGTGTTGCT
TCTGCTGACACGCAGCTGTGATAACAATAGCTGCACACGGTGTCGGTGAT
CGCCCATCAGCGAACTTTCAACCATTTTTGTTTGCTGCCGCTGTTTGAAC
GTGCAATTTACAGCTCTTCACTATTCTGAAGGTTCAGATCACAGCCAACT
TACACAGAGACTTGACCAGCATATACCTTTCTAATATCACGAAAGTCCGA
GAGCGAGCTGGCATTTTACAGGAGCAAATATTGAGCACTGCATGAGCAGC
CTAGTCACTTCTTCAGCGGCCCGCAACATGAAAGACACAAACATTCAGTG
GGCATTCACAAGAACCCTGCTACGCCCATGCGTCAGGTGACACAATCGCA
GCCGCACACGCAGCAGGTTCTCTAGCCATGTTGCATGATGCAGACTCCGT
GTCACCACATGCCCTGCAAGGCGTGCCATATGCGACCGTCGCATGCAGCA
CAACGCCTTGTAGGGTTGTCCGATTACACGCTCCCATGCCTGGTGGCCTG
CACTTTTACAGCCCCAACCACATTATCACATTCACGCGCCGCCGCTGCCG
CGCTACGCGCCCACAGCAGCAGCGCTTCACACGCAGCCCCCCACCAACGG
GTGCTGCACCTGCCTGTGCTCACGCGGAAAATTCCCTTTTGTGCACCACT
GCCACGCCGCCCCGCAGCTGCGCGGCACGGAGCACGAGCCGTACCTGCGT
CTGCTGGAGCTCTTTGCGTACGGCGTGTATGGCGACCACAAGGCCGCGGG
CGGAGCGCTGCCGCAGCTGAGCGATGCCATGACGGAGAAGCTGCGCATGC
TCACGGTCGTCGCGCTCGCCAACACGAGCCGCGTGGTGCCGTACGGCAAG
CTGCAGGAGGCGCTAGGGGTGAGTGTGTAATGTCGGCGGTGGTGCTCACG
GGCTGCTTTTCATGAGCGCGAGGGGAGGGGGGGGGGCATAGGGGCGCAGA
CGCCTGCGGAAGGCGGCAGCGGGAGGGCGCGGCGATGCCATGACTGAGCG
GCTGTGAATGCTGAAAGTGATTGACGCCACAGTGGTAATTGCAAGCGCAA
GCCTCGTAGTTAAGGTTGGGGTCATGGGCCAGGGGGCCAGCTTTGGGGAT
CCAGGGGGATGAGTACATGAGCAGTACAGCAGCAGCAGTGTCATCCATTA
GCTCGACACAAATGTCGGGCACTGGCAGAAGGCAAAGCGCTGCCACGGCT
GAGCAGTGCCATGCCTGCCGCACTTGGGATGTCTTGATATCTCGCGCTCG
CAAACCCACGTGGCATGTACTTTTGTTTTAACACTCTTACTCGGGCCTGT
GGAAATGCCCTGCTGTATGGTTGTTGGCCTTGTTTTCGCTGTTGGATGTC
GCATGCAAAGCTGGCATGTACCGTGTTGCGTCTCGATTTGTGTAGAGGAC
GTCCTGACGAAGCGCAGCAGCGCTCAGACAACGTGAAATGCGCAGCTGCG
ACGCACATTCGCTGGTGGGAGCGCTGTCGCCGAGCACTGCCGCGCCTGAG
CAGCTGCGCGCGCCGACAGCTGCCTCGCTCGTTCGCGCGAGCGTGCGCGC
GCGCGCGCGCACGGCTCTTGTTACGGCGGCAAACACAGTATACATACCCC
ATTGCATACATATATACACCATGCGTACTTTTGAGAAGCAATGCGGACAC
TGGCAGTGTCCTCGTGACAGTCTTCACGGGCCCAGTCACCACCCCAACAG
TTACACCCTAAATCTACTAGAAGTAGTAAATCTCTGAGCGTTGTTCACAT
GTTGTTATGCGCTGATCGCTGCCCCCTTACCCCCCCCCCCCCGCCCGCCA
AACACACAAACCCACGCGAATGCGCACAGGTCTCGTCTGTGCGCGTGGTG
GAGGACGTGGTGCTGGACGCCATGTACGCGGGGCTGCTGCAGTGCAGGCT
GGACCAGCGCGCGGGGACCCTGCGCGTTCAGGTGCGCGCAACGCTCAGCG
CTGTTTGTGATGTGCGACCCATCATTTCTGACCCCGATTGCAGGCCGCGT
AGTGGTCGATGAGGCCACAGCATGGGATGCGCTATACATGGAGTAGTTCA
AAGAGCCCGTTCGTGTGCGGGATGTAAGCCGTCGTGCAGGCTGGACCAGC
GCGCGGGGACCCTGCGCGTTCAGGTGCGCGCAACAACGCTCAGCGCCACG
CTCCCTGTGCCGCGCATACGCTGCATCAGCTGCGTGCCCGCCACTATTCT
CCCTCCCCCGCTGATGGCACGTCAACTGCCGAAGGCGACTCTCCAGGTGT
CTCCATGGAAGTGACGCTCCTAGTGACAACTACCTGCCATGTGTGCATGA
GGTAGCCTCTGCAAGCAGGTCTGACCAGCCGACCAGCCGAGCGTGCCAGC
CCTTGTTGGTCATTTTGCCCTGTTCGCTCTCCGCTTACACGTATGCATAC
ATTAGGAGTCAAACACCCGTGTGTGCTCCAGGACTCGCTCCCCCCATGTT
ATCCCTGATCGCGACGATCATGGTGCCCGGAACCTGAGTAGCCCCCTTGC
TATGGCGGCGCTGGCTCACGTTCTCGCACAGGCGCCAGCTCCCGTCATGG
AGTGGTGGCCCCGCTCTCAAGTTAAAACCGTAAGCCGACATGCGTTTGGC
CTTCCTCGGGCGCGAGCAAGGATAATGGATTCCTTCAGACGCCGCCATCA
TGACCAAGGGCAACAAGTTCAGCTGCTATGAGCCAGCGACCGGCGTGCTC
CGCTGGCGCCACCGCCGCGCCTCGCGGCAGCGGCAGCGGCGGCGGCAGGC
GCAGCTCACCGGAGCACCTGCCGTGGCAGCAGCACACCGCGACGGCAGCG
CAATGCGCGCGCAAATTGCACTCAGGCCTCAGGACCGTGGCAGGCGGCGG
CAGAGGCGCGGCGGTGGCGCCAGCAGAGCACGCCGTCGCTGGCTCACAAC
AGCTGAATTTCTCGCCCTTTATTTTGATGGCGGTGTCCGAAGAACCCGTT
GTACTTGCTGATGCTCGAGGAAGGTGAAACGCACATCGGCTCGCTGTCAA
GCGGGCCCACCTCTCCACAACGGGAGCCGACGCCGGTGCGAGAACGTGAG
CCAGCGCCGCCGGTGCGAGAATGGGGGCCACTCGAGTTCCGGGCGCCATG
ATCGTCACGATAAGGGATACAAAGGGGGGAGCGAATGATATGCGTACGTG
TGCGCGGAGGGTAAGCAGGGCAAAATGACCGTCAAGTGCTGGCGGGGGCG
CGAAATCGCTCGCAGTGCAATGTCGGATGAGGCCGCAGCATGGGATGGGC
AACAAAGAGAGTGTGTAGCTCAGGTAGCGCGTGTGTGTGCGGGGTTGCAA
GCGGATGTGCACGCTAGAACAGCGCGTGGGGACCCTGCGCGATCAGCTGT
GCACAACGCTAGCCGTTGTGAGATGCAAGAGCGTGTCACAGCTTACGGAT
TTGCGATCATCGCGTTCACGTACGCCACGACGACGTGTCATACAATACGC
AGTGAATGTGCTCATTGCCATTTGCTCAGAAGCGCCAGGCGCCGCCATGC
GACGCGGCTCGCACCGGCTCAATGTCCGTAGGGTATAGAGATGCGCTCCT
TGAACTTGAAGTTGACAGAATGAATACACCTGCTCTTGACAGCACGTGAC
GCCACGCAGCGTGCGCCCGGAGGAGATGGACGGCATAACCACATACCTAC
ACCTCGATGAGACACAAAGACATGCTGTGGAGTACACAGGTGCACCTCTT
GAAGTTCATATACTGAACATACTCCCGCAACCACTCTACAGCACGTCACG
CCGCGCGACGTGCGCCCGGAGGAGATTGACAGCATGATAGCGACGCTGGA
CATGTGGGCGGGGGCGACGGACCGCGCGCTGAGGGGGCTGCGGAAGGGCG
TCAACAGCGCAAAAGCGGCGTGGAAGGCGGAGGAGGTGCAGCAAAGG
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Coding sequence (CDS) from alignment at Contig_49:216367..220613-

>mRNA_10442 ID=mRNA_10442|Name=jgi.p|Trimin1|71461|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=615bp|location=Sequence derived from alignment at Contig_49:216367..220613- (Tribonema minus UTEX_B_3156 )
ATGGCCGAAGATGGAGGAGCTGCTGGGCTGGAGCAGTATTGCCTCCTGGC
TAAGACAGCCAAGGGCAGGGCCTGTGTGGCGCTGATCCAGAAAGTCATGG
CTGACAAGAAAATCTTTGTCTTTGGGGAGCTGCTGGCGATGCCCAACGTA
CAAGGGCTGCGCGGCACGGAGCACGAGCCGTACCTGCGTCTGCTGGAGCT
CTTTGCGTACGGCGTGTATGGCGACCACAAGGCCGCGGGCGGAGCGCTGC
CGCAGCTGAGCGATGCCATGACGGAGAAGCTGCGCATGCTCACGGTCGTC
GCGCTCGCCAACACGAGCCGCGTGGTGCCGTACGGCAAGCTGCAGGAGGC
GCTAGGGGTCTCGTCTGTGCGCGTGGTGGAGGACGTGGTGCTGGACGCCA
TGTACGCGGGGCTGCTGCAGTGCAGGCTGGACCAGCGCGCGGGGACCCTG
CGCGTTCAGCACGTCACGCCGCGCGACGTGCGCCCGGAGGAGATTGACAG
CATGATAGCGACGCTGGACATGTGGGCGGGGGCGACGGACCGCGCGCTGA
GGGGGCTGCGGAAGGGCGTCAACAGCGCAAAAGCGGCGTGGAAGGCGGAG
GAGGTGCAGCAAAGG
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