Trimin1|349747|estExt_Genemark1.C_Ctg_480020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349747
Unique NameTrimin1|349747|estExt_Genemark1.C_Ctg_480020
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length617
Homology
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BLAST of jgi.p|Trimin1|349747 vs. uniprot
Match: A0A835YR48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR48_9STRA)

HSP 1 Score: 983 bits (2540), Expect = 0.000e+0
Identity = 616/616 (100.00%), Postives = 616/616 (100.00%), Query Frame = 0 
Query:    1 MSRHEPGRAIDADLALAVQQRAAAGDAARGDADYAVGSDSSDRDGTSATAPLLQAGELDDYLAAAAPPRIGGRQDRGGIAPSSRRQQPQPGPGLQTVEDAGSKREHRELQNAVLTKLRTFARQRQWQAALLELERLREEGVPTTAAMHNAVMHTLAVSGKWKGALELLRTLREQRGDAQVGTDIXXXXXXXXXXXXXXXXXXXXXQEMLDGADGAAAPDAISFSCAVNACYLSGRADVALGLLRACEKAARVAPNAAMYNXXXXXXXXXXXXGAALALLQEMRERGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATPGLKPTISVYNKLLAACAKSGLWAEASEALDTMRADGVHPNLQSFICALLACRAAPLPPSAAAPALRAVALLRDMELLGVRPDAFALSVAAVVCAERGEQAHAETALDRLLRMAPGGSGXXXXXXXXAVFNAKEAGRAVTAVLKACARAALWEGALKYLHRARVAGLTAPPDGKWLLIPVIGACAAAGKPTKVIRLIEELREAGGNVSPRVLTCLVQAYAVRGEEGDWREAAELVQEMEAQFGLAPEAEALRFAVSACQAAGEGERVEPLAEKLRAMEESERVSESSEVRSKAAGE 616
            MSRHEPGRAIDADLALAVQQRAAAGDAARGDADYAVGSDSSDRDGTSATAPLLQAGELDDYLAAAAPPRIGGRQDRGGIAPSSRRQQPQPGPGLQTVEDAGSKREHRELQNAVLTKLRTFARQRQWQAALLELERLREEGVPTTAAMHNAVMHTLAVSGKWKGALELLRTLREQRGDAQVGTDIXXXXXXXXXXXXXXXXXXXXXQEMLDGADGAAAPDAISFSCAVNACYLSGRADVALGLLRACEKAARVAPNAAMYNXXXXXXXXXXXXGAALALLQEMRERGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATPGLKPTISVYNKLLAACAKSGLWAEASEALDTMRADGVHPNLQSFICALLACRAAPLPPSAAAPALRAVALLRDMELLGVRPDAFALSVAAVVCAERGEQAHAETALDRLLRMAPGGSGXXXXXXXXAVFNAKEAGRAVTAVLKACARAALWEGALKYLHRARVAGLTAPPDGKWLLIPVIGACAAAGKPTKVIRLIEELREAGGNVSPRVLTCLVQAYAVRGEEGDWREAAELVQEMEAQFGLAPEAEALRFAVSACQAAGEGERVEPLAEKLRAMEESERVSESSEVRSKAAGE
Sbjct:    1 MSRHEPGRAIDADLALAVQQRAAAGDAARGDADYAVGSDSSDRDGTSATAPLLQAGELDDYLAAAAPPRIGGRQDRGGIAPSSRRQQPQPGPGLQTVEDAGSKREHRELQNAVLTKLRTFARQRQWQAALLELERLREEGVPTTAAMHNAVMHTLAVSGKWKGALELLRTLREQRGDAQVGTDIXXXXXXXXXXXXXXXXXXXXXQEMLDGADGAAAPDAISFSCAVNACYLSGRADVALGLLRACEKAARVAPNAAMYNXXXXXXXXXXXXGAALALLQEMRERGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATPGLKPTISVYNKLLAACAKSGLWAEASEALDTMRADGVHPNLQSFICALLACRAAPLPPSAAAPALRAVALLRDMELLGVRPDAFALSVAAVVCAERGEQAHAETALDRLLRMAPGGSGXXXXXXXXAVFNAKEAGRAVTAVLKACARAALWEGALKYLHRARVAGLTAPPDGKWLLIPVIGACAAAGKPTKVIRLIEELREAGGNVSPRVLTCLVQAYAVRGEEGDWREAAELVQEMEAQFGLAPEAEALRFAVSACQAAGEGERVEPLAEKLRAMEESERVSESSEVRSKAAGE 616
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349747 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YR48_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 93..231
e-value: 2.8E-19
score: 71.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 321..440
e-value: 2.9E-15
score: 58.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 244..320
e-value: 7.8E-13
score: 50.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 453..615
e-value: 3.2E-16
score: 61.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 185..209
e-value: 5.3E-5
score: 23.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 322..365
e-value: 7.5E-5
score: 22.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 258..291
e-value: 7.0E-8
score: 30.2
coord: 329..361
e-value: 1.3E-5
score: 23.0
coord: 184..209
e-value: 1.4E-5
score: 22.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 254..302
e-value: 1.8E-8
score: 34.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 255..289
score: 11.564229
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 326..360
score: 11.060009
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..211
score: 9.076014
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 597..616
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 121..429
coord: 387..593

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_48contigContig_48:203384..205744 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349747mRNA_12590Tribonema minus UTEX_B_3156 mRNAContig_48 203364..205744 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349747|estExt_Genemark1.C_Ctg_480020 ID=Trimin1|349747|estExt_Genemark1.C_Ctg_480020|Name=jgi.p|Trimin1|349747|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=617bp
MSRHEPGRAIDADLALAVQQRAAAGDAARGDADYAVGSDSSDRDGTSATA
PLLQAGELDDYLAAAAPPRIGGRQDRGGIAPSSRRQQPQPGPGLQTVEDA
GSKREHRELQNAVLTKLRTFARQRQWQAALLELERLREEGVPTTAAMHNA
VMHTLAVSGKWKGALELLRTLREQRGDAQVGTDIHNSALNACAKAGRWEE
ASELLQEMLDGADGAAAPDAISFSCAVNACYLSGRADVALGLLRACEKAA
RVAPNAAMYNGVMGACVRDGQHGAALALLQEMRERGVAPDELNYTTALAA
CAGAGWHDRAFALLAELRATPGLKPTISVYNKLLAACAKSGLWAEASEAL
DTMRADGVHPNLQSFICALLACRAAPLPPSAAAPALRAVALLRDMELLGV
RPDAFALSVAAVVCAERGEQAHAETALDRLLRMAPGGSGGGGSSGGGAVF
NAKEAGRAVTAVLKACARAALWEGALKYLHRARVAGLTAPPDGKWLLIPV
IGACAAAGKPTKVIRLIEELREAGGNVSPRVLTCLVQAYAVRGEEGDWRE
AAELVQEMEAQFGLAPEAEALRFAVSACQAAGEGERVEPLAEKLRAMEES
ERVSESSEVRSKAAGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat