mRNA_12590 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349747
Unique Name	mRNA_12590
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349747 vs. uniprot
Match: A0A835YR48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR48_9STRA)

HSP 1 Score: 983 bits (2542), Expect = 0.000e+0
Identity = 616/616 (100.00%), Postives = 616/616 (100.00%), Query Frame = 1

Query:    1 MSRHEPGRAIDADLALAVQQRAAAGDAARGDADYAVGSDSSDRDGTSATAPLLQAGELDDYLAAAAPPRIGGRQDRGGIAPSSRRQQPQPGPGLQTVEDAGSKREHRELQNAVLTKLRTFARQRQWQAALLELERLREEGVPTTAAMHNAVMHTLAVSGKWKGALELLRTLREQRGDAQVGTDIXXXXXXXXXXXXXXXXXXXXXQEMLDGADGAAAPDAISFSCAVNACYLSGRADVALGLLRACEKAARVAPNAAMYNXXXXXXXXXXXXGAALALLQEMRERGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATPGLKPTISVYNKLLAACAKSGLWAEASEALDTMRADGVHPNLQSFICALLACRAAPLPPSAAAPALRAVALLRDMELLGVRPDAFALSVAAVVCAERGEQAHAETALDRLLRMAPGGSGXXXXXXXXAVFNAKEAGRAVTAVLKACARAALWEGALKYLHRARVAGLTAPPDGKWLLIPVIGACAAAGKPTKVIRLIEELREAGGNVSPRVLTCLVQAYAVRGEEGDWREAAELVQEMEAQFGLAPEAEALRFAVSACQAAGEGERVEPLAEKLRAMEESERVSESSEVRSKAAGE 1848
            MSRHEPGRAIDADLALAVQQRAAAGDAARGDADYAVGSDSSDRDGTSATAPLLQAGELDDYLAAAAPPRIGGRQDRGGIAPSSRRQQPQPGPGLQTVEDAGSKREHRELQNAVLTKLRTFARQRQWQAALLELERLREEGVPTTAAMHNAVMHTLAVSGKWKGALELLRTLREQRGDAQVGTDIXXXXXXXXXXXXXXXXXXXXXQEMLDGADGAAAPDAISFSCAVNACYLSGRADVALGLLRACEKAARVAPNAAMYNXXXXXXXXXXXXGAALALLQEMRERGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATPGLKPTISVYNKLLAACAKSGLWAEASEALDTMRADGVHPNLQSFICALLACRAAPLPPSAAAPALRAVALLRDMELLGVRPDAFALSVAAVVCAERGEQAHAETALDRLLRMAPGGSGXXXXXXXXAVFNAKEAGRAVTAVLKACARAALWEGALKYLHRARVAGLTAPPDGKWLLIPVIGACAAAGKPTKVIRLIEELREAGGNVSPRVLTCLVQAYAVRGEEGDWREAAELVQEMEAQFGLAPEAEALRFAVSACQAAGEGERVEPLAEKLRAMEESERVSESSEVRSKAAGE
Sbjct:    1 MSRHEPGRAIDADLALAVQQRAAAGDAARGDADYAVGSDSSDRDGTSATAPLLQAGELDDYLAAAAPPRIGGRQDRGGIAPSSRRQQPQPGPGLQTVEDAGSKREHRELQNAVLTKLRTFARQRQWQAALLELERLREEGVPTTAAMHNAVMHTLAVSGKWKGALELLRTLREQRGDAQVGTDIXXXXXXXXXXXXXXXXXXXXXQEMLDGADGAAAPDAISFSCAVNACYLSGRADVALGLLRACEKAARVAPNAAMYNXXXXXXXXXXXXGAALALLQEMRERGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATPGLKPTISVYNKLLAACAKSGLWAEASEALDTMRADGVHPNLQSFICALLACRAAPLPPSAAAPALRAVALLRDMELLGVRPDAFALSVAAVVCAERGEQAHAETALDRLLRMAPGGSGXXXXXXXXAVFNAKEAGRAVTAVLKACARAALWEGALKYLHRARVAGLTAPPDGKWLLIPVIGACAAAGKPTKVIRLIEELREAGGNVSPRVLTCLVQAYAVRGEEGDWREAAELVQEMEAQFGLAPEAEALRFAVSACQAAGEGERVEPLAEKLRAMEESERVSESSEVRSKAAGE 616

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349747 vs. uniprot

BLAST of jgi.p|Trimin1|349747 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YR48_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_48	contig	Contig_48:203364..205744 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349747\|estExt_Genemark1.C_Ctg_480020
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Pentatricopeptide repeat
Ec32 ortholog	Ec-07_007800.1
TranscriptId	350069
Track	FilteredModels1
ProteinId	349747

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349747	gene_12590	Tribonema minus UTEX_B_3156	gene	Contig_48 203364..205744 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12590_2	exon_12590_2	Tribonema minus UTEX_B_3156	exon	Contig_48 203364..205213 -
exon_12590_1	exon_12590_1	Tribonema minus UTEX_B_3156	exon	Contig_48 205724..205744 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12590	UTR3_12590	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_48 203364..203383 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12590	CDS_12590	Tribonema minus UTEX_B_3156	CDS	Contig_48 205724..205744 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349747	Trimin1\|349747\|estExt_Genemark1.C_Ctg_480020	Tribonema minus UTEX_B_3156	polypeptide	Contig_48 203384..205744 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_48:203364..205744-
coding sequence from alignment at Contig_48:203364..205744-

spliced messenger RNA

>mRNA_12590 ID=mRNA_12590|Name=jgi.p|Trimin1|349747|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1871bp|location=Sequence derived from alignment at Contig_48:203364..205744- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGACACGAGCCTGGCCGAGCCATCGACGCGGACCTAGCGCTGGC
AGTTCAACAGCGCGCAGCTGCTGGTGATGCCGCACGAGGCGACGCAGATT
ATGCAGTCGGGAGCGACAGCAGCGATCGCGACGGCACCAGCGCCACGGCA
CCGCTGCTGCAGGCGGGCGAGCTGGACGATTATCTAGCTGCAGCAGCTCC
GCCGCGCATCGGTGGGCGCCAGGACAGGGGTGGCATCGCCCCCAGCAGCA
GACGACAGCAACCGCAGCCAGGTCCGGGTCTCCAGACCGTAGAGGATGCG
GGCTCAAAACGGGAGCACCGGGAGCTGCAGAACGCGGTGCTGACGAAGCT
GCGCACCTTCGCGCGGCAGCGGCAGTGGCAGGCGGCGCTGCTGGAGCTGG
AGCGGCTGCGGGAGGAGGGCGTGCCCACGACGGCCGCCATGCACAACGCT
GTCATGCACACGCTGGCCGTGAGCGGCAAGTGGAAGGGCGCGCTGGAGCT
GCTGCGCACGCTCAGGGAGCAGCGCGGCGACGCGCAGGTGGGCACCGACA
TCCACAACTCCGCGCTCAACGCCTGCGCCAAGGCCGGGCGCTGGGAGGAG
GCCTCGGAGCTCCTGCAAGAGATGCTCGACGGCGCTGACGGCGCCGCCGC
GCCCGACGCCATCAGCTTCTCGTGCGCGGTGAACGCGTGCTACCTGAGCG
GCCGCGCGGACGTGGCGCTGGGGCTGCTGCGCGCGTGCGAGAAGGCCGCG
CGCGTGGCGCCCAACGCCGCCATGTACAACGGCGTCATGGGCGCGTGCGT
GCGCGACGGGCAGCATGGCGCTGCCCTCGCGCTGCTGCAGGAGATGCGCG
AACGCGGCGTCGCCCCCGACGAGCTCAACTACACGACGGCGCTCGCGGCG
TGCGCGGGCGCGGGCTGGCACGACCGCGCCTTCGCGCTGCTCGCGGAGCT
GCGCGCGACGCCCGGCCTCAAGCCCACCATCAGCGTCTACAACAAGCTGC
TGGCGGCGTGCGCCAAGTCGGGGCTGTGGGCGGAGGCCAGCGAGGCGCTC
GACACGATGCGCGCGGACGGCGTCCACCCCAACCTCCAGTCCTTCATCTG
CGCGCTGCTGGCGTGCCGCGCGGCGCCGCTGCCGCCCAGCGCCGCCGCCC
CCGCGCTGCGCGCCGTCGCGCTGCTGCGCGACATGGAGCTCCTGGGCGTG
CGCCCCGATGCCTTCGCGCTCTCCGTCGCCGCAGTCGTGTGCGCGGAGCG
AGGCGAGCAGGCGCACGCCGAGACCGCCCTCGACCGCCTGCTGCGCATGG
CCCCCGGCGGCAGCGGCGGCGGCGGCAGCAGCGGCGGCGGCGCCGTCTTC
AACGCCAAGGAGGCGGGGCGCGCGGTGACGGCGGTGCTCAAGGCGTGCGC
GCGTGCGGCGCTGTGGGAGGGCGCGCTCAAGTACCTGCACAGGGCGCGCG
TTGCGGGGCTGACGGCGCCGCCAGACGGCAAATGGCTGCTGATCCCGGTG
ATTGGGGCCTGCGCAGCAGCGGGAAAGCCTACCAAGGTCATACGGCTCAT
CGAGGAGCTTCGCGAGGCGGGAGGCAACGTGTCGCCGCGTGTGCTCACGT
GCCTCGTTCAGGCGTACGCCGTGCGGGGGGAGGAGGGGGACTGGCGGGAA
GCTGCGGAGCTGGTGCAGGAGATGGAAGCGCAGTTTGGCTTAGCGCCGGA
GGCAGAGGCGTTAAGGTTTGCTGTCAGCGCGTGCCAGGCTGCCGGGGAGG
GAGAGCGAGTCGAGCCTCTGGCGGAAAAGCTGCGGGCGATGGAGGAGTCC
GAGCGTGTCAGCGAGAGCTCTGAAGTCAGAAGCAAAGCTGCAGGTGAATA
ACACATCTACGCATGTTGCAA

protein sequence of jgi.p|Trimin1|349747

>Trimin1|349747|estExt_Genemark1.C_Ctg_480020 ID=Trimin1|349747|estExt_Genemark1.C_Ctg_480020|Name=jgi.p|Trimin1|349747|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=617bp
MSRHEPGRAIDADLALAVQQRAAAGDAARGDADYAVGSDSSDRDGTSATA
PLLQAGELDDYLAAAAPPRIGGRQDRGGIAPSSRRQQPQPGPGLQTVEDA
GSKREHRELQNAVLTKLRTFARQRQWQAALLELERLREEGVPTTAAMHNA
VMHTLAVSGKWKGALELLRTLREQRGDAQVGTDIHNSALNACAKAGRWEE
ASELLQEMLDGADGAAAPDAISFSCAVNACYLSGRADVALGLLRACEKAA
RVAPNAAMYNGVMGACVRDGQHGAALALLQEMRERGVAPDELNYTTALAA
CAGAGWHDRAFALLAELRATPGLKPTISVYNKLLAACAKSGLWAEASEAL
DTMRADGVHPNLQSFICALLACRAAPLPPSAAAPALRAVALLRDMELLGV
RPDAFALSVAAVVCAERGEQAHAETALDRLLRMAPGGSGGGGSSGGGAVF
NAKEAGRAVTAVLKACARAALWEGALKYLHRARVAGLTAPPDGKWLLIPV
IGACAAAGKPTKVIRLIEELREAGGNVSPRVLTCLVQAYAVRGEEGDWRE
AAELVQEMEAQFGLAPEAEALRFAVSACQAAGEGERVEPLAEKLRAMEES
ERVSESSEVRSKAAGE*

mRNA from alignment at Contig_48:203364..205744-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12590 ID=mRNA_12590|Name=jgi.p|Trimin1|349747|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2381bp|location=Sequence derived from alignment at Contig_48:203364..205744- (Tribonema minus UTEX_B_3156 )
ATGTCCAGACACGAGCCTGGCGTCAGATACGGTGCTGTGGAACGAGAGTT
GCTTCTGCCAGCTCACTTTTGAAATACGTTCCAGCTCAGGGCGAGACGTC
GACCCGGCTTCAACTGGTGGCTTCTTATTAGTGGCCGGGATCTGCTACAG
GTCAATGGACTTCAATTTTGTTTAGCCAGCCGTGCTCTAGGGCTGGTCTT
GTTGCAAGATCAGGGGCAGCCTCTAGACCAAACGCCAAGCTGTTGCTGCT
GCTCGAATATCCAGCGCCACGCTTTGAGGCTCAATCAAAGCATGCGGCCT
GCAGTGTCCCGTACCCTTGTAAAAGGCAGAGTAGGCTGTTGTAGGCTTCT
CAGTGCTACTAGCGCGCATAGCACAGACTTTAATGATCATACATCAGCAG
ATTCGGCACCGCCACGGCCCCCTCGCCCGCAGCAGGAGCGGAAGCAGCCC
AGGTTGAATTTGTCGCGCGTTTTGGCCTCTGGGCAGCCCGCCGCCGCAGG
CAGGCGTATACCACCCGGTCGTCCTCTGCAGCGAGCCATCGACGCGGACC
TAGCGCTGGCAGTTCAACAGCGCGCAGCTGCTGGTGATGCCGCACGAGGC
GACGCAGATTATGCAGTCGGGAGCGACAGCAGCGATCGCGACGGCACCAG
CGCCACGGCACCGCTGCTGCAGGCGGGCGAGCTGGACGATTATCTAGCTG
CAGCAGCTCCGCCGCGCATCGGTGGGCGCCAGGACAGGGGTGGCATCGCC
CCCAGCAGCAGACGACAGCAACCGCAGCCAGGTCCGGGTCTCCAGACCGT
AGAGGATGCGGGCTCAAAACGGGAGCACCGGGAGCTGCAGAACGCGGTGC
TGACGAAGCTGCGCACCTTCGCGCGGCAGCGGCAGTGGCAGGCGGCGCTG
CTGGAGCTGGAGCGGCTGCGGGAGGAGGGCGTGCCCACGACGGCCGCCAT
GCACAACGCTGTCATGCACACGCTGGCCGTGAGCGGCAAGTGGAAGGGCG
CGCTGGAGCTGCTGCGCACGCTCAGGGAGCAGCGCGGCGACGCGCAGGTG
GGCACCGACATCCACAACTCCGCGCTCAACGCCTGCGCCAAGGCCGGGCG
CTGGGAGGAGGCCTCGGAGCTCCTGCAAGAGATGCTCGACGGCGCTGACG
GCGCCGCCGCGCCCGACGCCATCAGCTTCTCGTGCGCGGTGAACGCGTGC
TACCTGAGCGGCCGCGCGGACGTGGCGCTGGGGCTGCTGCGCGCGTGCGA
GAAGGCCGCGCGCGTGGCGCCCAACGCCGCCATGTACAACGGCGTCATGG
GCGCGTGCGTGCGCGACGGGCAGCATGGCGCTGCCCTCGCGCTGCTGCAG
GAGATGCGCGAACGCGGCGTCGCCCCCGACGAGCTCAACTACACGACGGC
GCTCGCGGCGTGCGCGGGCGCGGGCTGGCACGACCGCGCCTTCGCGCTGC
TCGCGGAGCTGCGCGCGACGCCCGGCCTCAAGCCCACCATCAGCGTCTAC
AACAAGCTGCTGGCGGCGTGCGCCAAGTCGGGGCTGTGGGCGGAGGCCAG
CGAGGCGCTCGACACGATGCGCGCGGACGGCGTCCACCCCAACCTCCAGT
CCTTCATCTGCGCGCTGCTGGCGTGCCGCGCGGCGCCGCTGCCGCCCAGC
GCCGCCGCCCCCGCGCTGCGCGCCGTCGCGCTGCTGCGCGACATGGAGCT
CCTGGGCGTGCGCCCCGATGCCTTCGCGCTCTCCGTCGCCGCAGTCGTGT
GCGCGGAGCGAGGCGAGCAGGCGCACGCCGAGACCGCCCTCGACCGCCTG
CTGCGCATGGCCCCCGGCGGCAGCGGCGGCGGCGGCAGCAGCGGCGGCGG
CGCCGTCTTCAACGCCAAGGAGGCGGGGCGCGCGGTGACGGCGGTGCTCA
AGGCGTGCGCGCGTGCGGCGCTGTGGGAGGGCGCGCTCAAGTACCTGCAC
AGGGCGCGCGTTGCGGGGCTGACGGCGCCGCCAGACGGCAAATGGCTGCT
GATCCCGGTGATTGGGGCCTGCGCAGCAGCGGGAAAGCCTACCAAGGTCA
TACGGCTCATCGAGGAGCTTCGCGAGGCGGGAGGCAACGTGTCGCCGCGT
GTGCTCACGTGCCTCGTTCAGGCGTACGCCGTGCGGGGGGAGGAGGGGGA
CTGGCGGGAAGCTGCGGAGCTGGTGCAGGAGATGGAAGCGCAGTTTGGCT
TAGCGCCGGAGGCAGAGGCGTTAAGGTTTGCTGTCAGCGCGTGCCAGGCT
GCCGGGGAGGGAGAGCGAGTCGAGCCTCTGGCGGAAAAGCTGCGGGCGAT
GGAGGAGTCCGAGCGTGTCAGCGAGAGCTCTGAAGTCAGAAGCAAAGCTG
CAGGTGAATAACACATCTACGCATGTTGCAA

Coding sequence (CDS) from alignment at Contig_48:203364..205744-

>mRNA_12590 ID=mRNA_12590|Name=jgi.p|Trimin1|349747|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1851bp|location=Sequence derived from alignment at Contig_48:203364..205744- (Tribonema minus UTEX_B_3156 )
ATGTCCAGACACGAGCCTGGCCGAGCCATCGACGCGGACCTAGCGCTGGC
AGTTCAACAGCGCGCAGCTGCTGGTGATGCCGCACGAGGCGACGCAGATT
ATGCAGTCGGGAGCGACAGCAGCGATCGCGACGGCACCAGCGCCACGGCA
CCGCTGCTGCAGGCGGGCGAGCTGGACGATTATCTAGCTGCAGCAGCTCC
GCCGCGCATCGGTGGGCGCCAGGACAGGGGTGGCATCGCCCCCAGCAGCA
GACGACAGCAACCGCAGCCAGGTCCGGGTCTCCAGACCGTAGAGGATGCG
GGCTCAAAACGGGAGCACCGGGAGCTGCAGAACGCGGTGCTGACGAAGCT
GCGCACCTTCGCGCGGCAGCGGCAGTGGCAGGCGGCGCTGCTGGAGCTGG
AGCGGCTGCGGGAGGAGGGCGTGCCCACGACGGCCGCCATGCACAACGCT
GTCATGCACACGCTGGCCGTGAGCGGCAAGTGGAAGGGCGCGCTGGAGCT
GCTGCGCACGCTCAGGGAGCAGCGCGGCGACGCGCAGGTGGGCACCGACA
TCCACAACTCCGCGCTCAACGCCTGCGCCAAGGCCGGGCGCTGGGAGGAG
GCCTCGGAGCTCCTGCAAGAGATGCTCGACGGCGCTGACGGCGCCGCCGC
GCCCGACGCCATCAGCTTCTCGTGCGCGGTGAACGCGTGCTACCTGAGCG
GCCGCGCGGACGTGGCGCTGGGGCTGCTGCGCGCGTGCGAGAAGGCCGCG
CGCGTGGCGCCCAACGCCGCCATGTACAACGGCGTCATGGGCGCGTGCGT
GCGCGACGGGCAGCATGGCGCTGCCCTCGCGCTGCTGCAGGAGATGCGCG
AACGCGGCGTCGCCCCCGACGAGCTCAACTACACGACGGCGCTCGCGGCG
TGCGCGGGCGCGGGCTGGCACGACCGCGCCTTCGCGCTGCTCGCGGAGCT
GCGCGCGACGCCCGGCCTCAAGCCCACCATCAGCGTCTACAACAAGCTGC
TGGCGGCGTGCGCCAAGTCGGGGCTGTGGGCGGAGGCCAGCGAGGCGCTC
GACACGATGCGCGCGGACGGCGTCCACCCCAACCTCCAGTCCTTCATCTG
CGCGCTGCTGGCGTGCCGCGCGGCGCCGCTGCCGCCCAGCGCCGCCGCCC
CCGCGCTGCGCGCCGTCGCGCTGCTGCGCGACATGGAGCTCCTGGGCGTG
CGCCCCGATGCCTTCGCGCTCTCCGTCGCCGCAGTCGTGTGCGCGGAGCG
AGGCGAGCAGGCGCACGCCGAGACCGCCCTCGACCGCCTGCTGCGCATGG
CCCCCGGCGGCAGCGGCGGCGGCGGCAGCAGCGGCGGCGGCGCCGTCTTC
AACGCCAAGGAGGCGGGGCGCGCGGTGACGGCGGTGCTCAAGGCGTGCGC
GCGTGCGGCGCTGTGGGAGGGCGCGCTCAAGTACCTGCACAGGGCGCGCG
TTGCGGGGCTGACGGCGCCGCCAGACGGCAAATGGCTGCTGATCCCGGTG
ATTGGGGCCTGCGCAGCAGCGGGAAAGCCTACCAAGGTCATACGGCTCAT
CGAGGAGCTTCGCGAGGCGGGAGGCAACGTGTCGCCGCGTGTGCTCACGT
GCCTCGTTCAGGCGTACGCCGTGCGGGGGGAGGAGGGGGACTGGCGGGAA
GCTGCGGAGCTGGTGCAGGAGATGGAAGCGCAGTTTGGCTTAGCGCCGGA
GGCAGAGGCGTTAAGGTTTGCTGTCAGCGCGTGCCAGGCTGCCGGGGAGG
GAGAGCGAGTCGAGCCTCTGGCGGAAAAGCTGCGGGCGATGGAGGAGTCC
GAGCGTGTCAGCGAGAGCTCTGAAGTCAGAAGCAAAGCTGCAGGTGAATA
A