mRNA_12626 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167140
Unique NamemRNA_12626
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A836CCI5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI5_9STRA)

HSP 1 Score: 305 bits (781), Expect = 5.790e-105
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1
Query:    1 MTASPATRSAADPTSPPVAAPPYAYAYCHGFLSYPRSTKGVHVRKELQHLADIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVRGEL 459
            MTASPATRSAADPTSPPVAAPPYAYAYCHGFLSYPRSTKGVHVRKELQHLADIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVRGEL
Sbjct:    1 MTASPATRSAADPTSPPVAAPPYAYAYCHGFLSYPRSTKGVHVRKELQHLADIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVRGEL 153          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A6H5LM87_9PHAE (CYTH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM87_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.940e-36
Identity = 74/131 (56.49%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   67 YAYAYCHGFLSYPRSTKGVHVRKELQHLADIELLDLNLPDGS--GVVTYASGLAAIERF-LEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVR 450
            +AYAYCHGFLS P S KG  +RK L  + D+EL  LNL  G+  G +T +  + A+  F L+Q+  L   G+KLRL+GSSLGG++VAR+AEL+PE VDRIFMLCP+F +G RA KF    EMAEWER G R
Sbjct:   41 FAYAYCHGFLSGPGSIKGQALRKSLLEV-DVELSLLNLNGGNDPGAITCSGAVEAVRAFHLQQKCALGDQGLKLRLVGSSLGGFVVARYAELYPEEVDRIFMLCPSFGLGTRAGKFASEAEMAEWERTGAR 170          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A0G4EN47_VITBC (CYTH domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EN47_VITBC)

HSP 1 Score: 110 bits (274), Expect = 3.460e-25
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   64 PYAYAYCHGFLSYPRSTKGVHVRKELQHLA-DIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHG-VKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKF------LPPEEMAEWERDGVR 450
            P+ Y Y HG+LS P+S KG  ++ +L  L  D++L+DLN     G +TY   L A++   E++   HG G VKLRLIGSSLGGY  AR+AELHP  VDR+ +LCPAF    +  K         P +M  W+  G R
Sbjct:    8 PFRYVYLHGWLSGPQSFKGTFLKDKLSPLGIDLQLIDLNRGKPPGQMTYDGALIAVDEVWEREAGAHGEGEVKLRLIGSSLGGYFAARYAELHPNRVDRMVLLCPAFDFHNQFRKLTGENTVFGPPDMDGWQSAGSR 144          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A7S0P1I8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P1I8_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 2.180e-24
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   73 YAYCHGFLSYPRSTKGVHVRKELQ--HLADIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLP-PEEMAEWERDGVR 450
            YAY HGFLS P S+KG+ + + LQ     D+ LLDLN P G G +     L+AI+          G G  LRLIGSS GG+ VAR+AEL+P+ VDR+ +LCP+F +G R    +   EE+A W   G R
Sbjct:    8 YAYAHGFLSGPTSSKGLFIHRALQARFSLDLSLLDLNGPAGIGGLRPERALSAIDECYAA-----GSGTPLRLIGSSFGGWAVARYAELYPDRVDRMLLLCPSFRLGSRWEHIVGGSEELAAWHAGGFR 131          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A0F6W7C1_9DELT (Uncharacterized protein n=2 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6W7C1_9DELT)

HSP 1 Score: 98.2 bits (243), Expect = 1.420e-22
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   70 AYAYCHGFLSYPRSTKGVHVRKELQHLADIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLH-GHG-VKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVRGEL 459
            AY Y HGF S  RS KGVH+   L    D++L +LN P  + +        +I+  L +   +H  HG  + RL+GSSLGG++ AR+AELHPE VDR+ +LCPAF I  R  + + P E   W     RGEL
Sbjct:    4 AYGYLHGFASSARSKKGVHLHTALGDRIDLQLAELNRPSFAKL--------SIDAMLAELDAMHEAHGRPRWRLVGSSLGGWLTARWAELHPERVDRVILLCPAFDIETRWPQLMKPGEFETWR---ARGEL 124          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A4D9CST7_9STRA (CYTH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CST7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.220e-22
Identity = 64/152 (42.11%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   25 SAADPTSPPVAAPP-------YAYAYCHGFLSYPRSTKGVHVRKEL-QHLADIELLDLN--LPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVR 450
            S A PTS   A+ P         YAY HGFLS   S KG H+++ L    A + LL+LN  + +G G ++Y+ GLAAI    +++    G+ VKL L+GSSLGGY+ ARFAEL+PEAV+++ + CP F +  R  + L    M  W ++G R
Sbjct:   23 SPASPTSGTAASQPGGDPIVKRVYAYAHGFLSDENSFKGRHLQQFLASRNAHLHLLNLNGGVGEGMGGISYSRGLAAIRALYDKEGGREGN-VKLTLVGSSLGGYVAARFAELYPEAVEKLVLFCPGFDLQARWPRRLGGAAMRAWMKEGHR 173          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A850G8U5_9DELT (Alpha/beta fold hydrolase n=1 Tax=Pseudenhygromyxa sp. WMMC2535 TaxID=2712867 RepID=A0A850G8U5_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 2.210e-20
Identity = 55/128 (42.97%), Postives = 73/128 (57.03%), Query Frame = 1
Query:   73 YAYCHGFLSYPRSTKGVHVRKELQHLA-DIELLDLNLPDGSGVVTYASGLAAIERF---LEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDG 444
            YAY HGF S   S KG  +R+    L   + L DLN P  + + +Y   L A +RF   L+  R       + RLIGSS+GGY+ AR+A LHPE VDR+ +LCPAF   +R  + L  +  A+WER G
Sbjct:    5 YAYLHGFASSSLSAKGQALRRVFDGLGRTLHLPDLNYPSFAEL-SYTGMLEAFDRFDRQLDAGRSPRSEPARWRLIGSSMGGYLAARWAALHPERVDRLLLLCPAFDFAQRWPQLLGDKAFADWERAG 131          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A661NP74_9DELT (Alpha/beta hydrolase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NP74_9DELT)

HSP 1 Score: 92.4 bits (228), Expect = 3.440e-20
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 1
Query:   64 PYAYAYCHGFLSYPRSTKGVHVRKELQHLA-DIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVRGEL 459
            P  YAY HGF S P++TKGV + K  +    D EL DLN P   G+ ++ + L A++     +      G +  LIGSSLGG++ AR+AE+HP  V+R+ +LCP F + +R    L  E+MA+W   G  GEL
Sbjct:    7 PLRYAYLHGFASSPKATKGVALAKAFRDRGHDFELPDLNQPAFEGL-SHDACLGALDAMHRNRAA--DDGARWCLIGSSLGGWLAARWAEMHPARVERLVLLCPGFDLRDRWPAMLGSEKMAKW---GSEGEL 133          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A838IC20_9DELT (Alpha/beta fold hydrolase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IC20_9DELT)

HSP 1 Score: 88.6 bits (218), Expect = 7.900e-19
Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   64 PYAYAYCHGFLSYPRSTKGVHVRKELQ-HLADIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDG 444
            PY YAY HGF S P S K   + +    H   + L DLN P  + + T +  L A+ER   Q       G   RL+GSS+GGY+ ARFAELHP+ VDR+ +LCP F + +R         M +W+ DG
Sbjct:    4 PYRYAYLHGFASSPLSIKARRLAEIFAAHGHILHLPDLNQPSFAKL-TVSGALEALERLDAQIE-----GGPWRLVGSSMGGYLAARFAELHPQRVDRLVLLCPGFDLLQRWPTLFGKRRMDQWKADG 125          
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Match: A0A847F437_9DELT (Alpha/beta fold hydrolase n=1 Tax=Sandaracinaceae bacterium TaxID=2510337 RepID=A0A847F437_9DELT)

HSP 1 Score: 88.6 bits (218), Expect = 8.400e-19
Identity = 60/134 (44.78%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   58 APPYAYAYCHGFLSYPRSTKGVHVRKELQHLAD--IELL--DLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGV 447
            AP   YAY HGF S P + KG H+R  L   AD  IELL  DLN P  + +      + A+   L+ Q    G  +  RLIGSSLGG++ AR+AE HPE VD + +LCPAF I  R  K  P      W RDG 
Sbjct:    3 APRIHYAYFHGFRSSPNAKKGNHLRAVL---ADDGIELLLPDLNQPSFASL-----SVGAMLAHLDAQHEREGRPI-WRLIGSSLGGWLAARWAERHPEHVDSLVLLCPAFDIKNRWPKMFPSGVFEAWRRDGA 127          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167140 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCI5_9STRA5.790e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LM87_9PHAE4.940e-3656.49CYTH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A0G4EN47_VITBC3.460e-2544.53CYTH domain-containing protein n=2 Tax=Vitrella br... [more]
A0A7S0P1I8_9EUKA2.180e-2445.74Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A0F6W7C1_9DELT1.420e-2243.18Uncharacterized protein n=2 Tax=Sandaracinus amylo... [more]
A0A4D9CST7_9STRA3.220e-2242.11CYTH domain-containing protein n=1 Tax=Nannochloro... [more]
A0A850G8U5_9DELT2.210e-2042.97Alpha/beta fold hydrolase n=1 Tax=Pseudenhygromyxa... [more]
A0A661NP74_9DELT3.440e-2041.35Alpha/beta hydrolase n=1 Tax=Deltaproteobacteria b... [more]
A0A838IC20_9DELT7.900e-1941.41Alpha/beta fold hydrolase n=1 Tax=Bradymonadaceae ... [more]
A0A847F437_9DELT8.400e-1944.78Alpha/beta fold hydrolase n=1 Tax=Sandaracinaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_48contigContig_48:696278..697969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167140|e_gw1.48.12.1
Max annot lvl2759|Eukaryota
EggNOG OGs2E3SU@1|root,2SAT4@2759|Eukaryota
Evalue8.01e-38
Seed ortholog2880.D8LRD6
Hectar predicted targeting categoryother localisation
TranscriptId167462
TrackFilteredModels1
ProteinId167140
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167140gene_12626Tribonema minus UTEX_B_3156 geneContig_48 696278..697969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167140Trimin1|167140|e_gw1.48.12.1Tribonema minus UTEX_B_3156 polypeptideContig_48 696278..697969 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12626_2exon_12626_2Tribonema minus UTEX_B_3156 exonContig_48 696278..696419 -
exon_12626_1exon_12626_1Tribonema minus UTEX_B_3156 exonContig_48 697650..697969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12626CDS_12626Tribonema minus UTEX_B_3156 CDSContig_48 697650..697969 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12626 ID=mRNA_12626|Name=jgi.p|Trimin1|167140|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_48:696278..697969- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCCTCCCCAGCAACACGAAGTGCAGCTGACCCAACCTCGCCACC
AGTAGCAGCGCCACCCTATGCATACGCCTACTGCCATGGCTTTCTGAGCT
ATCCTCGCAGCACCAAAGGCGTTCATGTCAGGAAGGAGCTGCAGCACTTG
GCGGACATTGAGCTGTTGGATCTGAATTTGCCAGATGGCAGTGGGGTGGT
GACCTATGCCTCTGGCCTGGCGGCGATCGAGCGCTTTTTGGAGCAGCAGC
GGTTGCTTCATGGACACGGCGTGAAACTTAGACTCATAGGCAGCAGCCTG
GGTGGATACATCGTCGCCAGGTTCGCTGAGCTTCACCCGGAGGCAGTGGA
CCGAATTTTTATGCTCTGCCCTGCTTTTTCCATTGGGGAACGTGCCTCAA
AATTTCTGCCGCCTGAGGAAATGGCGGAGTGGGAACGAGACGGTGTAAGA
GGTGAACTTTGA
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protein sequence of jgi.p|Trimin1|167140

>Trimin1|167140|e_gw1.48.12.1 ID=Trimin1|167140|e_gw1.48.12.1|Name=jgi.p|Trimin1|167140|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
MTASPATRSAADPTSPPVAAPPYAYAYCHGFLSYPRSTKGVHVRKELQHL
ADIELLDLNLPDGSGVVTYASGLAAIERFLEQQRLLHGHGVKLRLIGSSL
GGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVR
GEL*
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mRNA from alignment at Contig_48:696278..697969-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12626 ID=mRNA_12626|Name=jgi.p|Trimin1|167140|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1692bp|location=Sequence derived from alignment at Contig_48:696278..697969- (Tribonema minus UTEX_B_3156 )
ATGACAGCCTCCCCAGCAACACGAAGTGCAGCTGACCCAACCTCGCCACC AGTAGCAGCGCCACCCTATGCATACGCCTACTGCCATGGCTTTCTGAGCT ATCCTCGCAGCACCAAAGGCGTTCATGTCAGGAAGGAGCTGCAGCACTTG GCGGACATTGAGCTGTTGGATCTGAATTTGCCAGATGGCAGTGGGGTGGT GACCTATGCCTCTGGCCTGGCGGCGATCGAGCGCTTTTTGGAGCAGCAGC GGTTGCTTCATGGACACGGCGTGAAACTTAGACTCATAGGCAGCAGCCTG GGTGGATACATCGTCGCCAGGTGCGTCGAGTGCACCGCGCAGTCTTGAAT ACCATCTCAGTCAGCGGCAACGGATTGCATGGCAGAGTATTCGAAAAGTG GCATGTGAAGGCTGAGATGCAGATTCACAATACACACCAGGAGCTGCCTG CAAGATTCAGATGACATCTATGATGTCAGGCCAGCAATCACCCAATACTT CCAGCACACTTTGCAGCTGAATGACGTAAGTACGGGTAGCGACGTAAGTA CGCGTAACGACGCAAGTATGCAGGATTCTGGGTAATGACGGCTAATGACG GCAAACCCTAGTTGCTGCAGTATCCTAAACCTAGCCCTGACCCTGACTAA GGATAGGGTTAGAATGCTCCAAGGCGCAATGGTGCATGACAGGGCATGCT AAATTCCATCGGAAACTACTGCATGGCTGCCATGCTCAGGTCGATGCATG CAAATGTTATTTGACTACTAGCACTACCATGAGTGTACGGGTACACAGTG TCTTGATGTCATGTACGCACTGCCACGCAGATGCCATTCGCAAGCATGTC GCACGAAAACACGCCGAGGCGGCGCCACAAGCCTGATCGCCAGCAGCAGC AACACTCGTCCCAGCGAGCCTGACCGCCAGCAGCAGCAGCACTCGTTGTG CACAGCGACCTTAGCCTCTGACCTGGGCATGATGCCTCTCGCCACAGTGC AATAGAGCAGAGCGCAAGCCCCGTGCCCCTTGGCAGAACTGCAGCGAGTG ACCCTCGGCAGAACGTTTCGGGCCCGACTTCCTCAAACCCTAGCTAGGTT AAACCCCAACCTCCTAACCCTACTTGTGCCAAGCCCTAAACCCCCTCACC CTACTTAGGTCAAACCCTAGCCGTCATTACCGTAAGTATGTACGATCCGG GCTAATGACGTCATAACGCGTACGTACCTACCCCCAGGACACGTCATCAA CAACACTGCTGGCCGTGCATCGCTCAACTCAACGAGACCATTCCTTGTAC CTGTTGAAGATATACAGTAGATCACACTGAGCAGATGGGATGGCTGCAGC AGTCGGTGGCTTCTCATGTGCGTCGATGGCTCGCCTGTCGACAATAAGAG AGGAAGAGAGCGTGTGGTCTAGTTGCAATGTACATGCATATCATGGTCAG GTCGTGTATGTTGCTACTACGTGCATACTACATCTCAATGAAGAACAAGC GATAGAAGCGAACATTGACCTAGTATCACTGGGCGGACACCACTGCGCAG GTTCGCTGAGCTTCACCCGGAGGCAGTGGACCGAATTTTTATGCTCTGCC CTGCTTTTTCCATTGGGGAACGTGCCTCAAAATTTCTGCCGCCTGAGGAA ATGGCGGAGTGGGAACGAGACGGTGTAAGAGGTGAACTTTGA
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Coding sequence (CDS) from alignment at Contig_48:696278..697969-

>mRNA_12626 ID=mRNA_12626|Name=jgi.p|Trimin1|167140|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_48:696278..697969- (Tribonema minus UTEX_B_3156 )
ATGACAGCCTCCCCAGCAACACGAAGTGCAGCTGACCCAACCTCGCCACC
AGTAGCAGCGCCACCCTATGCATACGCCTACTGCCATGGCTTTCTGAGCT
ATCCTCGCAGCACCAAAGGCGTTCATGTCAGGAAGGAGCTGCAGCACTTG
GCGGACATTGAGCTGTTGGATCTGAATTTGCCAGATGGCAGTGGGGTGGT
GACCTATGCCTCTGGCCTGGCGGCGATCGAGCGCTTTTTGGAGCAGCAGC
GGTTGCTTCATGGACACGGCGTGAAACTTAGACTCATAGGCAGCAGCCTG
GGTGGATACATCGTCGCCAGGTTCGCTGAGCTTCACCCGGAGGCAGTGGA
CCGAATTTTTATGCTCTGCCCTGCTTTTTCCATTGGGGAACGTGCCTCAA
AATTTCTGCCGCCTGAGGAAATGGCGGAGTGGGAACGAGACGGTGTAAGA
GGTGAACTTTGA
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