mRNA_6217 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6217 ID=mRNA_6217|Name=jgi.p|Trimin1|349692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2303bp|location=Sequence derived from alignment at Contig_47:282523..287400- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCGGGCGGCGCAGCTTGGGCTTGCCGCTGCTGTACGAGGGCCT
GGCACTGCTGACATACAGCAGCGCAGCAATTGAAGATGGGGATCTGGAGG
GAGGAGAGGCAGCGAACCTCCACAAGCACCGCTCAGAGACAGTCGAGGAA
GGGGGGCACCCGCCCCAAGAGGCACTGGATGAAGTGACGCCACCTGATCC
AGAAACTTCAACAGTTGAAGTGATGCACAGCCCCGCTCTGGCGGTGCGAT
TTGACTTCAGCAGCAGCGGCGGCAGCAGCGGCAACGGCAGCAGCAGCAGC
AGCGGTGGCAGCAGCAGCGGCGGCAGCAGTAGCGGCAGCGGCAGCGGCGG
ACTTGACGCGAACAGCGGCGCGCTGCAGCTGTGCATGGCGCTGGCCGACG
AGGGGCTGCTGCAGGTGCTCGTCACCTTTGCATCAGCTGCTCAGTTCTAC
AATAGCGTTGATGAAGTGATGCTCCAGTCACCAGCATTGGCGGATGGCGG
CAGCGGCAGCGGCGCTGGCATCAACGCAGGCACTGGCGATGGCGGCGGCG
GCGGCAGCAACGATAACGGCAGCAGCAGCACCTATGGCAGCAGCAGCAGC
AGCGGTAACGGCGCCTCCAAGCACATACTCCTGCTGAGGACCCATCACAC
GAGCGCGCGCTTTGCTGAGCAGCTGACGCGCTCTGCGCTGAGCGATGCCA
GCATGGAGCCCACGGCGCGCGCAGTCAGACTGGCTGCGGGGCTTTCGTGC
GGCGACTATGATATCCTTGCGGCGCTGCTGCCAGGAGCAATGTCGAGCGC
TGCTGCAGGTAGTGAGGGGCAAGCAGTTGACGCTGGGCCGAACGCCAGCC
TGCCTCGCGAAGGTGATATTGAAGCAGCAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCAACTGCTGGGTTTGAAGATGTTGCTGGCAGCGGCGCTGTGAT
TGAGGGCAACAGTGACGGCGGCAGCGGCAGCAGTACTGCGCCGGGCGTCC
AACACGTTGGTGATGGTGATGATGATGGCAGCAGCTTTGACAGCATTAGC
AGCAATACCCAGAGCAACACCCAGAGCAACATCATCAGTGCAAGCGGCGC
ACACGGCAGCATCGACCACCAAGCCCTGCAGCAGGCGCCGTATGACTTGC
ATGCGGCAGCCAGCGCCATCGTTGAAGAGAGGCGCCAGCAGCTGCTGCGC
GAGTGGGGTTTGCTGCTACCAGCGGAGCCATCACGACAGTTACAGCCTGA
TCAGCCGCCACCACCACAGCATTACGTGCCGCTGTGGGAGGTGCTGGGCC
AGCTGAGTCTGCCGCAGGAGCAAGGCAACGCTCAGCAGCAGCAGCAGCAG
CAGCGCAGCGCAGCCGCCGTGCCAGAGCTCCTCGCTACATGCTCCGTGAC
CGGCAATCAGCTGCACCAGATGGTCCGTGACGGTTGGCTGGACGTGGTGC
CAGACTCAGACTCACTGTGGGGACAAGTCACAGTCCGCATTCCCGCATTC
TGGCGGCGACCGCAGGCGGCAGGAGATGGGGAGGGTACCGCTGACGGCGC
AGCACGCGCGCCTCACACTCATGAGCTGCTGCTGCCGCTGCAGGCGACGC
TGCTCGAGCGCGCTCAGCTCACTACGCTGGACAACTGCCTGCTGACGCCA
GCGCCGCTGACGCGCGTCGCGTTCAGGCAAATGTGCAGTGACGCCGGCGG
CGGCGACAGCGGCGGCGCCGACAACAGTGGCGGCAGCGGCGGCAGCGGCA
GCGGTGGCGGCTGCAGTAGCAGCAGTGCAGTAGCAGGGCGGTACATCCAG
ACGTGCCTGGAGCTGGCGCACATCAGGCGTGAGGTTGCCCTGCTGGAGCG
CGACAGAGGGGAGCTGGGGCGGTGGTGGCACGCTATTGGGCAGGTGCGCG
CGGAGTTTAGGGGGCGGCGCGAGGGGCTGGAGGAGGCACAGTGGACGCTG
GCGCAGCTGGAGCTTATACGGCAGGAGCGGCAGGCGGCCGTGTTGGCCAA
CGAGGCAAGGAGCAGAGCCAGAAGACTGCAAGCGCAAGCCACCGACACCA
TCACTGCCTTTCAACGCGACATTGCGTCGGCAGTAGACGCGGCAGCGGCA
GCAGCGGCAGCAGCAGAAAAAGCCTTCAACGCAGAAACTCAGACGTATCA
ACACCTGCAGCTGCCATCGGTAGCGACAGCCAGCGGGGTGGAAGAGGCTG
TAATCGCCGACATAGAAGCGGGCACCAGGATGCGCCCCGAGCCGTTCAAC
ACTGAGTGTGTTGAGTGTGAGGGTAGTGGGGAGAGCAGTGCTGCACAGGG
GGG
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protein sequence of jgi.p|Trimin1|349692

>Trimin1|349692|estExt_Genemark1.C_Ctg_470040 ID=Trimin1|349692|estExt_Genemark1.C_Ctg_470040|Name=jgi.p|Trimin1|349692|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=767bp
MERGRRSLGLPLLYEGLALLTYSSAAIEDGDLEGGEAANLHKHRSETVEE
GGHPPQEALDEVTPPDPETSTVEVMHSPALAVRFDFSSSGGSSGNGSSSS
SGGSSSGGSSSGSGSGGLDANSGALQLCMALADEGLLQVLVTFASAAQFY
NSVDEVMLQSPALADGGSGSGAGINAGTGDGGGGGSNDNGSSSTYGSSSS
SGNGASKHILLLRTHHTSARFAEQLTRSALSDASMEPTARAVRLAAGLSC
GDYDILAALLPGAMSSAAAGSEGQAVDAGPNASLPREGDIEAAAAAAAAA
AAATAGFEDVAGSGAVIEGNSDGGSGSSTAPGVQHVGDGDDDGSSFDSIS
SNTQSNTQSNIISASGAHGSIDHQALQQAPYDLHAAASAIVEERRQQLLR
EWGLLLPAEPSRQLQPDQPPPPQHYVPLWEVLGQLSLPQEQGNAQQQQQQ
QRSAAAVPELLATCSVTGNQLHQMVRDGWLDVVPDSDSLWGQVTVRIPAF
WRRPQAAGDGEGTADGAARAPHTHELLLPLQATLLERAQLTTLDNCLLTP
APLTRVAFRQMCSDAGGGDSGGADNSGGSGGSGSGGGCSSSSAVAGRYIQ
TCLELAHIRREVALLERDRGELGRWWHAIGQVRAEFRGRREGLEEAQWTL
AQLELIRQERQAAVLANEARSRARRLQAQATDTITAFQRDIASAVDAAAA
AAAAAEKAFNAETQTYQHLQLPSVATASGVEEAVIADIEAGTRMRPEPFN
TECVECEGSGESSAAQG
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mRNA from alignment at Contig_47:282523..287400-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6217 ID=mRNA_6217|Name=jgi.p|Trimin1|349692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4878bp|location=Sequence derived from alignment at Contig_47:282523..287400- (Tribonema minus UTEX_B_3156 )
ATGGAGCGCGGGCGGCGCAGCTTGGGCTTGCCGCTGCTGTACGAGGTAAG CGTGTAGTTCTTATCTATAAGGGAGTCTTTTGAGTTTTTTGAGTTGTGTT CTTAAAGGCGTGGATGCCTTGTGATTCAGACAGGAAGAGAATGCAGCAGC ACACCATATGAAATCTGCGAGCTTGCAGTTGCAACTCATCAGGAGCGCAT GGCAAATGTCCGCTGTTGCTGACAGGGTCATCGTTGAAGTAGGTGGCGGT CAGAGCACAGAGACACATGGCTCCAGGAATGTGTTCCGCCAGTGCCTCAT TTTGGTGCAGTGCTATGACCGTATTATCCATAATCAGGCCCATTGGGCGA GTTGCTTCATGAGGGCGAAATCAGGGGCAATTTGCCCTCAAGGAGTCAGC GTTATATGAGGAGCTGATTCGGTATGCAGACAATGCGGGCACCCGTGAAG GAGGACGCTTTTGCTTGGAGTATCGGATGCACGGCACTGCGTCGCTGCTA CACCCTGCACTTGCATAATATCAGGGCCTGGCACTGCTGACATACAGCAG CGCAGCAATTGAAGATGGGGATCTGGAGGGAGGAGAGGCAGCGAACCTCC ACAAGGTACCTTCTCAGGGCATATAATCAACTGGCACCTTCCAGCAGTAC CAAAGTCTGGCGCTGCTGATGTAGAGCAGTCCATTGCTGCTGATGTACAG CAGTCCATTGCTGGGCTGCTGTACATCAGATCCTATGCCCTGACAAGGGT TCTTGTTGAAGTGAGCATTGCAAGATTTGCTGCATCTCCTCAAGATCACC ATCTTCAATTGCAGGACTGCTGTACACCAGCAGCGCCGGGCTGGCACTAC GCGTGCACAGGCTGTGGCAGCAACGTCGTGACAAGCATCCGATGATCCAA GCAGAAGCTTATGTAGTTCGCGGGCGCCCGCATTGTCTGCATATCTGATC AGCTCCTGTATAACGCTGACCCCTTGGGCAGAATGCCAGCACCTCTCGAA TACGCGCAGTAACGTCGATAGGCTGCCCACCACTGTCAAAGTCAGCCGAT ACTGCTTCGGCGCCGGCATCCTGGCCTGCCGCATGCCAAATTGGGCTCTG TTTTCATGTATGTCCTCAAGCTGCCCCCCTAGGTCATGTTCCCCCCTGTG TGTGTGCTCCTCTCGCCATGCCCTTTGTCTTTCTGACTGCTGGCTCCGTG TCCCGGCGGCACCTGAATGTACATTCTCAGATGTCATTCTGGCACCCATT GCCAAGCTCGTGAGGCCACCATCCTCTCCAGGCAATGTACAGCTCGCATA CAGTTCTTGACAAAGGCCAGGCCAGCCGTTTTCCGTGAGAAGGTGGCTGG AGCCAGCAAGCTTAGTGCATGGGTGGCCGCAAAGAAGCGGGCAAATGTGA TGGTGGAGCGCCATCTATGTTCAAGTATATGGAGAAAATAAGGGTGGGGT ACATCAACGTTTGAGTCACTCTAGCTTATCTGACGACATCATGAACTGCC GGGCCTGAAACAAAGCAGCATGCTTCACAGCAGTTTCAGACTTGAAAACA ACAACTTGAAAATGATTGCTCGGAAGTGACTCGCACAACAACAGTTGAGT TCAGAATGCACTCTGACTGATCAGCAGGCGCTGGCAGTAGGTTGTCTTCA GCCAATGAAGCTATCAAAATAGCTTTCTTCGTCGAGGAGGAAGGCAAGCA ACAGCGTGCTGGATAGTATTCATGACACGAAAAAGGGTTGGGCAGCATCT TGTGAGGGTTGGAAAACTCATACAACTCGCCCCATGGGCTTGAAGAGGTA ATACAGTATGATTGTGTAAGTCATTATGCAGCTTATGGGGGCATGCGCTG GGCCTGATGATGCTGCTTGGATGTCCGATTTGCAGACTATCAGATCATTC TAGTTTGAGGATACTGAACTCGAACGCTGGCCATTCTTCAAGTTCACAAC TGATGCTATGCAGGCCCAAGAGCCTCAGAAGTCCCAAGGTTATGTCTAAA GTATTTCATTGGCATGGCTTCGCCTTGTGCTCATTGTAGCTCATACGTGG CTGCTCCTCCCACTTGGTGTGTCCAGATTTTCGTGCATCGGCACCGACCA AAGAATTAGAGCAGCACCGCTCAGAGACAGTCGAGGAAGGGGGGCACCCG CCCCAAGAGGCACTGGATGAAGTGACGCCACCTGATCCAGAAACTTCAAC AGTTGAAGTGATGCACAGCCCCGCTCTGGCGGTGCGATTTGACTTCAGCA GCAGCGGCGGCAGCAGCGGCAACGGCAGCAGCAGCAGCAGCGGTGGCAGC AGCAGCGGCGGCAGCAGTAGCGGCAGCGGCAGCGGCGGACTTGACGCGAA CAGCGGCGCGCTGCAGCTGTGCATGGCGCTGGCCGACGAGGGGCTGCTGC AGGTGCTCGTCACCTTTGCATCAGCTGCTCAGTTCTACAATAGCGTTGAT GAAGTGATGCTCCAGTCACCAGCATTGGCGGATGGCGGCAGCGGCAGCGG CGCTGGCATCAACGCAGGCACTGGCGATGGCGGCGGCGGCGGCAGCAACG ATAACGGCAGCAGCAGCACCTATGGCAGCAGCAGCAGCAGCGGTAACGGC GCCTCCAAGCACATACTCCTGCTGAGGACCCATCACACGAGCGCGCGCTT TGCTGAGCAGCTGACGCGCTCTGCGCTGAGCGATGCCAGCATGGAGCCCA CGGCGCGCGCAGTCAGACTGGCTGCGGGGCTTTCGTGCGGCGACTATGAT ATCCTTGCGGCGCTGCTGCCAGGAGCAATGTCGAGCGCTGCTGCAGGTAG TGAGGGGCAAGCAGTTGACGCTGGGCCGAACGCCAGCCTGCCTCGCGAAG GTGATATTGAAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAACT GCTGGGTTTGAAGATGTTGCTGGCAGCGGCGCTGTGATTGAGGGCAACAG TGACGGCGGCAGCGGCAGCAGTACTGCGCCGGGCGTCCAACACGTTGGTG ATGGTGATGATGATGGCAGCAGCTTTGACAGCATTAGCAGCAATACCCAG AGCAACACCCAGAGCAACATCATCAGTGCAAGCGGCGCACACGGCAGCAT CGACCACCAAGCCCTGCAGCAGGCGCCGTATGACTTGCATGCGGCAGCCA GCGCCATCGTTGAAGAGAGGCGCCAGCAGCTGCTGCGCGAGTGGGGTTTG CTGCTACCAGCGGAGCCATCACGACAGTTACAGCCTGATCAGCCGCCACC ACCACAGCATTACGTGCCGCTGTGGGAGGTGCTGGGCCAGCTGAGTCTGC CGCAGGAGCAAGGCAACGCTCAGCAGCAGCAGCAGCAGCAGCGCAGCGCA GCCGCCGTGCCAGAGCTCCTCGCTACATGCTCCGTGACCGGCAATCAGCT GCACCAGATGGTCCGTGACGGTTGGCTGGACGTGGTGCCAGACTCAGACT CACTGTGGGGACAAGTCACAGTCCGCATTCCCGCATTCTGGCGGCGACCG CAGGCGGCAGGAGATGGGGAGGGTACCGCTGACGGCGCAGCACGCGCGCC TCACACTCATGAGCTGCTGCTGCCGCTGCAGGCGACGCTGCTCGAGCGCG CTCAGCTCACTACGCTGGACAACTGCCTGCTGACGCCAGCGCCGCTGACG CGCGTCGCGTTCAGGCAAATGTGCAGTGACGCCGGCGGCGGCGACAGCGG CGGCGCCGACAACAGTGGCGGCAGCGGCGGCAGCGGCAGCGGTGGCGGCT GCAGTAGCAGCAGTGCAGTAGCAGGGCGGTACATCCAGACGTGCCTGGAG CTGGCGCACATCAGGCGTGAGGTTGCCCTGCTGGAGCGCGACAGAGGGGA GCTGGGGCGGTGGTGGCACGCTATTGGGCAGGTGCGCGCGGAGTTTAGGG GGCGGCGCGAGGGGCTGGAGGAGGCACAGTGGACGCTGGCGCAGCTGGAG CTTATACGGCAGGAGCGGCAGGCGGCCGTGTTGGCCAACGAGGTGAGGGT TAGGGTTAGTGCAGTGCCCAGTGCTTCAGGGGGTAGGTTTAGGGGTAGGG CAAGGCGATCAGGGCTCAGCGGGGGGTCTTAGGGGGTTGTTTCAGGGTGT GCACAATCTAATTAGTTGCGTGGTGTCGGGCTCGTGCGTTGACGAGCAAT CTCGTCGAGACTCAAAAGAGGGCACACGAAAGGGCAGATGCACGGTGACA TGTGCACCGGACGCATGCCGCAGCTGCTTACACTGGGCGGGTGCTGAGCA CTGCGCGATGTGATCAAAACAACCGTTGCGGTGCGTGCGCTGCACGTGAG CATGCTGATGTGAGCGTGCCATGCGAGGCCGCTTGAGGTTTGATGCACGC TGAAGTTGGCGGTTTATGGTGGTGCAGCTCGGAATACATGGCGCACGATG CATGTAGTATGCCTTTTTCAGCTGGAAGGCATGTGCACTTCGAGCATCCC AATGAAACACGCTCTCACGTGGGGACTTGACAATAATGCCTCATTTCAGA AGTGCTATCAGTTGTGGCGATTGTTGAAGTATACATGGGTTGCCTGACAA CATACCCCCATGGCTGACCCCGCAAGCAGGCAAGGAGCAGAGCCAGAAGA CTGCAAGCGCAAGCCACCGACACCATCACTGCCTTTCAACGCGACATTGC GTCGGCAGTAGACGCGGCAGCGGCAGCAGCGGCAGCAGCAGAAAAAGCCT TCAACGCAGAAACTCAGACGTATCAACACCTGCAGCTGCCATCGGTAGCG ACAGCCAGCGGGGTGGAAGAGGCTGTAATCGCCGACATAGAAGCGGGCAC CAGGATGCGCCCCGAGCCGTTCAACACTGAGTGTGTTGAGTGTGAGGGTA GTGGGGAGAGCAGTGCTGCACAGGGGGG
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Coding sequence (CDS) from alignment at Contig_47:282523..287400-

>mRNA_6217 ID=mRNA_6217|Name=jgi.p|Trimin1|349692|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2301bp|location=Sequence derived from alignment at Contig_47:282523..287400- (Tribonema minus UTEX_B_3156 )
ATGGAGCGCGGGCGGCGCAGCTTGGGCTTGCCGCTGCTGTACGAGGGCCT
GGCACTGCTGACATACAGCAGCGCAGCAATTGAAGATGGGGATCTGGAGG
GAGGAGAGGCAGCGAACCTCCACAAGCACCGCTCAGAGACAGTCGAGGAA
GGGGGGCACCCGCCCCAAGAGGCACTGGATGAAGTGACGCCACCTGATCC
AGAAACTTCAACAGTTGAAGTGATGCACAGCCCCGCTCTGGCGGTGCGAT
TTGACTTCAGCAGCAGCGGCGGCAGCAGCGGCAACGGCAGCAGCAGCAGC
AGCGGTGGCAGCAGCAGCGGCGGCAGCAGTAGCGGCAGCGGCAGCGGCGG
ACTTGACGCGAACAGCGGCGCGCTGCAGCTGTGCATGGCGCTGGCCGACG
AGGGGCTGCTGCAGGTGCTCGTCACCTTTGCATCAGCTGCTCAGTTCTAC
AATAGCGTTGATGAAGTGATGCTCCAGTCACCAGCATTGGCGGATGGCGG
CAGCGGCAGCGGCGCTGGCATCAACGCAGGCACTGGCGATGGCGGCGGCG
GCGGCAGCAACGATAACGGCAGCAGCAGCACCTATGGCAGCAGCAGCAGC
AGCGGTAACGGCGCCTCCAAGCACATACTCCTGCTGAGGACCCATCACAC
GAGCGCGCGCTTTGCTGAGCAGCTGACGCGCTCTGCGCTGAGCGATGCCA
GCATGGAGCCCACGGCGCGCGCAGTCAGACTGGCTGCGGGGCTTTCGTGC
GGCGACTATGATATCCTTGCGGCGCTGCTGCCAGGAGCAATGTCGAGCGC
TGCTGCAGGTAGTGAGGGGCAAGCAGTTGACGCTGGGCCGAACGCCAGCC
TGCCTCGCGAAGGTGATATTGAAGCAGCAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCAACTGCTGGGTTTGAAGATGTTGCTGGCAGCGGCGCTGTGAT
TGAGGGCAACAGTGACGGCGGCAGCGGCAGCAGTACTGCGCCGGGCGTCC
AACACGTTGGTGATGGTGATGATGATGGCAGCAGCTTTGACAGCATTAGC
AGCAATACCCAGAGCAACACCCAGAGCAACATCATCAGTGCAAGCGGCGC
ACACGGCAGCATCGACCACCAAGCCCTGCAGCAGGCGCCGTATGACTTGC
ATGCGGCAGCCAGCGCCATCGTTGAAGAGAGGCGCCAGCAGCTGCTGCGC
GAGTGGGGTTTGCTGCTACCAGCGGAGCCATCACGACAGTTACAGCCTGA
TCAGCCGCCACCACCACAGCATTACGTGCCGCTGTGGGAGGTGCTGGGCC
AGCTGAGTCTGCCGCAGGAGCAAGGCAACGCTCAGCAGCAGCAGCAGCAG
CAGCGCAGCGCAGCCGCCGTGCCAGAGCTCCTCGCTACATGCTCCGTGAC
CGGCAATCAGCTGCACCAGATGGTCCGTGACGGTTGGCTGGACGTGGTGC
CAGACTCAGACTCACTGTGGGGACAAGTCACAGTCCGCATTCCCGCATTC
TGGCGGCGACCGCAGGCGGCAGGAGATGGGGAGGGTACCGCTGACGGCGC
AGCACGCGCGCCTCACACTCATGAGCTGCTGCTGCCGCTGCAGGCGACGC
TGCTCGAGCGCGCTCAGCTCACTACGCTGGACAACTGCCTGCTGACGCCA
GCGCCGCTGACGCGCGTCGCGTTCAGGCAAATGTGCAGTGACGCCGGCGG
CGGCGACAGCGGCGGCGCCGACAACAGTGGCGGCAGCGGCGGCAGCGGCA
GCGGTGGCGGCTGCAGTAGCAGCAGTGCAGTAGCAGGGCGGTACATCCAG
ACGTGCCTGGAGCTGGCGCACATCAGGCGTGAGGTTGCCCTGCTGGAGCG
CGACAGAGGGGAGCTGGGGCGGTGGTGGCACGCTATTGGGCAGGTGCGCG
CGGAGTTTAGGGGGCGGCGCGAGGGGCTGGAGGAGGCACAGTGGACGCTG
GCGCAGCTGGAGCTTATACGGCAGGAGCGGCAGGCGGCCGTGTTGGCCAA
CGAGGCAAGGAGCAGAGCCAGAAGACTGCAAGCGCAAGCCACCGACACCA
TCACTGCCTTTCAACGCGACATTGCGTCGGCAGTAGACGCGGCAGCGGCA
GCAGCGGCAGCAGCAGAAAAAGCCTTCAACGCAGAAACTCAGACGTATCA
ACACCTGCAGCTGCCATCGGTAGCGACAGCCAGCGGGGTGGAAGAGGCTG
TAATCGCCGACATAGAAGCGGGCACCAGGATGCGCCCCGAGCCGTTCAAC
ACTGAGTGTGTTGAGTGTGAGGGTAGTGGGGAGAGCAGTGCTGCACAGGG
G
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