mRNA_6179 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349668
Unique NamemRNA_6179
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349668 vs. uniprot
Match: A0A835Z0Q6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q6_9STRA)

HSP 1 Score: 262 bits (670), Expect = 1.790e-88
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 2 
Query:    5 MEAPDALADAGDDASGAAGTTFSNALMKRLAAQALPQGAALDPDAVSMLNQCCTGFIRAMAGHLQGPKTVTPDAVDALLAEMGFGEYAAAAAAQAESTDETTHRKKKRAKVKYTDEEIAERIAEQEKLCAASWKQMYGD 421
            MEAPDALADAGDDASGAAGTTFSNALMKRLAAQALPQGAALDPDAVSMLNQCCTGFIRAMAGHLQGPKTVTPDAVDALLAEMGFGEYAAAAAAQAESTDETTHRKKKRAKVKYTDEEIAERIAEQEKLCAASWKQMYGD
Sbjct:    1 MEAPDALADAGDDASGAAGTTFSNALMKRLAAQALPQGAALDPDAVSMLNQCCTGFIRAMAGHLQGPKTVTPDAVDALLAEMGFGEYAAAAAAQAESTDETTHRKKKRAKVKYTDEEIAERIAEQEKLCAASWKQMYGD 139
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349668 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0Q6_9STRA1.790e-88100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:93475..94114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349668|estExt_Genemark1.C_Ctg_470011
Hectar predicted targeting categoryother localisation
TranscriptId349990
TrackFilteredModels1
ProteinId349668
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349668gene_6179Tribonema minus UTEX_B_3156 geneContig_47 93475..94114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349668Trimin1|349668|estExt_Genemark1.C_Ctg_470011Tribonema minus UTEX_B_3156 polypeptideContig_47 93475..94110 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6179_2exon_6179_2Tribonema minus UTEX_B_3156 exonContig_47 93475..93588 -
exon_6179_1exon_6179_1Tribonema minus UTEX_B_3156 exonContig_47 93805..94114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6179CDS_6179Tribonema minus UTEX_B_3156 CDSContig_47 93805..94110 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6179UTR5_6179Tribonema minus UTEX_B_3156 five_prime_UTRContig_47 94111..94114 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6179 ID=mRNA_6179|Name=jgi.p|Trimin1|349668|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=424bp|location=Sequence derived from alignment at Contig_47:93475..94114- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGACATGGAGGCTCCCGATGCGCTGGCGGATGCGGGGGATGATGCTTCTG
GTGCAGCGGGGACCACATTTTCTAATGCGCTGATGAAGAGGCTGGCAGCG
CAGGCTCTGCCACAGGGAGCTGCATTGGATCCCGACGCCGTGAGCATGCT
CAATCAGTGCTGTACGGGCTTCATTAGAGCCATGGCTGGTCACTTACAGG
GTCCGAAAACTGTTACGCCGGATGCTGTCGATGCATTACTGGCAGAGATG
GGCTTTGGTGAGTATGCTGCTGCAGCAGCAGCTCAGGCGGAATCAACAGA
CGAGACAACGCACCGCAAGAAGAAGAGGGCGAAGGTGAAGTACACGGATG
AAGAGATAGCGGAGCGCATTGCTGAGCAGGAGAAGCTATGTGCTGCATCG
TGGAAGCAGATGTACGGAGACTGA
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protein sequence of jgi.p|Trimin1|349668

>Trimin1|349668|estExt_Genemark1.C_Ctg_470011 ID=Trimin1|349668|estExt_Genemark1.C_Ctg_470011|Name=jgi.p|Trimin1|349668|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
MEAPDALADAGDDASGAAGTTFSNALMKRLAAQALPQGAALDPDAVSMLN
QCCTGFIRAMAGHLQGPKTVTPDAVDALLAEMGFGEYAAAAAAQAESTDE
TTHRKKKRAKVKYTDEEIAERIAEQEKLCAASWKQMYGD*
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mRNA from alignment at Contig_47:93475..94114-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6179 ID=mRNA_6179|Name=jgi.p|Trimin1|349668|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=640bp|location=Sequence derived from alignment at Contig_47:93475..94114- (Tribonema minus UTEX_B_3156 )
TGACATGGAGGCTCCCGATGCGCTGGCGGATGCGGGGGATGATGCTTCTG
GTGCAGCGGGGACCACATTTTCTAATGCGCTGATGAAGAGGCTGGCAGCG
CAGGCTCTGCCACAGGGAGCTGCATTGGATCCCGACGCCGTGAGCATGCT
CAATCAGTGCTGTACGGGCTTCATTAGAGCCATGGCTGGTCACTTACAGG
GTCCGAAAACTGTTACGCCGGATGCTGTCGATGCATTACTGGCAGAGATG
GGCTTTGGTGAGTATGCTGCTGCAGCAGCAGCTCAGGCGGAATCAACAGA
CGAGACAACGGTGAGTCCCAGAGTAGCTCTGTTCGCTGAGCACCTCATTG
TGTGGTGGCAGGACATAAGTGACGTTCATGATCCTGGCTGAACCGGTGCC
CGCCGGCGCAGGCAACCGATCAGTTGTGTGTAGAATATAAGCGATGTGCT
GGTGCATGCCCACTGTGCTCCACAAGGGGACTTCATTCTCACCATGTGCT
GTGTACCCGGGTTTTCTGCATGTCAGCACCGCAAGAAGAAGAGGGCGAAG
GTGAAGTACACGGATGAAGAGATAGCGGAGCGCATTGCTGAGCAGGAGAA
GCTATGTGCTGCATCGTGGAAGCAGATGTACGGAGACTGA
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Coding sequence (CDS) from alignment at Contig_47:93475..94114-

>mRNA_6179 ID=mRNA_6179|Name=jgi.p|Trimin1|349668|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_47:93475..94114- (Tribonema minus UTEX_B_3156 )
ATGGAGGCTCCCGATGCGCTGGCGGATGCGGGGGATGATGCTTCTGGTGC
AGCGGGGACCACATTTTCTAATGCGCTGATGAAGAGGCTGGCAGCGCAGG
CTCTGCCACAGGGAGCTGCATTGGATCCCGACGCCGTGAGCATGCTCAAT
CAGTGCTGTACGGGCTTCATTAGAGCCATGGCTGGTCACTTACAGGGTCC
GAAAACTGTTACGCCGGATGCTGTCGATGCATTACTGGCAGAGATGGGCT
TTGGTGAGTATGCTGCTGCAGCAGCAGCTCAGGCGGAATCAACAGACGAG
ACAACGCACCGCAAGAAGAAGAGGGCGAAGGTGAAGTACACGGATGAAGA
GATAGCGGAGCGCATTGCTGAGCAGGAGAAGCTATGTGCTGCATCGTGGA
AGCAGATGTACGGAGACTGA
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