mRNA_6305 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167009
Unique NamemRNA_6305
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A835YS57_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS57_9STRA)

HSP 1 Score: 784 bits (2025), Expect = 1.090e-285
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 1
Query:    1 MLLNQSDRLGNKIGRGSVSNEEPPAPLLELQDFLNVPQRRRVTDESHRSLRGQLLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYSNVIPQRRSLDDAASAGAVTADXXXXXXXXXXXXXXXXXXXXXADVTGSAVPAVTVSTVPAAGXXXXXXXXXXXXDDAAANEDALTASTP 1257
            MLLNQSDRLGNKIGRGSVSNEEPPAPLLELQDFLNVPQRRRVTDESHRSLRGQLLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYSNVIPQRRSLDDAASAGAVTADXXXXXXXXXXXXXXXXXXXXXADVTGSAVPAVTVSTVPAAGXXXXXXXXXXXXDDAAANEDALTASTP
Sbjct:    1 MLLNQSDRLGNKIGRGSVSNEEPPAPLLELQDFLNVPQRRRVTDESHRSLRGQLLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYSNVIPQRRSLDDAASAGAVTADXXXXXXXXXXXXXXXXXXXXXADVTGSAVPAVTVSTVPAAGXXXXXXXXXXXXDDAAANEDALTASTP 419          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA)

HSP 1 Score: 423 bits (1088), Expect = 1.200e-145
Identity = 193/257 (75.10%), Postives = 220/257 (85.60%), Query Frame = 1
Query:  220 GAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYS 990
            GAKFQTV KYQ V+ LPG+Y+YLV+P+L+AG++VVL+TEF DGSY +LQAIGDG FD  LNKFID+W+ADGNR VWIRPMHEFNGDWY  GTYR GNS   FKRA++HV  VF+NRGANAKFQL YNC N RND  SF  WWPG   VDM++CSGYNRAGLD++HQ WQSFSDVYSSGY KMAAL G KPLG+AE SSTTWQSYSKPQWI+DAF+A+V KFTRV Q NWFLINK+G+WGLNSD ER AFGDS+N+YS
Sbjct:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYS 257          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A835YZR6_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR6_9STRA)

HSP 1 Score: 421 bits (1083), Expect = 4.510e-138
Identity = 207/330 (62.73%), Postives = 245/330 (74.24%), Query Frame = 1
Query:  166 IGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVR----------------------------------QLNWFLINKEG-DWGLNSDAERQAFGDSVNKYSNVIPQRRSLDDAASAGAVTA 1050
            IGI DD+SI+PT RE LIGAKFQ V KYQKV +LPGKY+YL++PHL+A RTVVL+ EF DGSY +LQAIGDGAFDSYLNKFIDEW+ADGNR +WIRPMHEFNGDWY  GTYR+GN   KF+RA++HV  VF+NRGA AK QL+YNCDNAR ++++F  W+PG   VDMV+CSGYNRAG D+ H  W+SF+DV++ GYN+MAAL G KPLG+AE SSTTWQS SKPQWI+DAF AVV KFTR+                                   Q NWFLINK   +WGLNSDAER+AFGDS+NKYS  I + R+L  + S  AVTA
Sbjct:  274 IGIIDDASITPTSRESLIGAKFQVVVKYQKVKELPGKYKYLLKPHLDANRTVVLVPEFYDGSYANLQAIGDGAFDSYLNKFIDEWKADGNRAMWIRPMHEFNGDWYSWGTYRSGNDRAKFQRAFKHVAYVFKNRGAQAKMQLSYNCDNARGENRNFTEWFPGTDVVDMVLCSGYNRAGTDSYHMSWKSFTDVFTPGYNRMAALSGNKPLGVAETSSTTWQSNSKPQWIKDAFYAVVNKFTRIXXXXXXXXXXXXXXEQFDCIYINKGDTFNCGLDTSQHNWFLINKGSLNWGLNSDAERKAFGDSINKYSANITKTRALT-SKSETAVTA 602          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA)

HSP 1 Score: 369 bits (946), Expect = 7.760e-124
Identity = 175/277 (63.18%), Postives = 207/277 (74.73%), Query Frame = 1
Query:  160 LLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYS 990
            L +G+ DD S  P +RE  IGA F  + KYQ +SDL GKYQYLV+ +L+ G+ V          Y +LQ I DGAFD  LN FID+  + GN+ +WIR +HEFNGDWYP GTYR GN +D FKRA+RHVV VFR RGAN KFQLAYNCDN  +D KSF  W+PG   VDM++CSGYNRAG+D+DH  WQSFS+V+SSGY KMA+L G KPLG+AE SST+W    K QWIRDAFDAVV +FTRV Q NWFLINK GDW LNSD+ER AFGDS+N+YS
Sbjct:    1 LHVGVVDDES--PGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYS 274          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA)

HSP 1 Score: 314 bits (805), Expect = 6.290e-98
Identity = 156/283 (55.12%), Postives = 199/283 (70.32%), Query Frame = 1
Query:  157 QLLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEF-DDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTG-NSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARND-SKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKE-GDWGLNSDAERQAFGDSVNKYSN 993
            +L + I D+  + P  R+  +GA+FQ V K+Q V  +  +Y +LV+P+L+ G  VV++TEF DD    +LQ IGDG +D YL +FIDE + DGNR VWIRPMHEFNGDWYP GTY  G N+ D F RA++H+  VF  + AN KFQLAYNCDNA++D +  F  WWPG   VDMVVCSGYNRAG D +H +W +F DVY++ YN+MAALPGLKPLG+ EMS   +  Y K QWIRDAF    T FTRV Q+ WFL NK+ G W LN+  E QAFGD + +Y++
Sbjct:   34 RLKVAILDE--MEPNARQAELGAQFQVVVKFQPVQQM--RYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKDDGRWDLNTPDEIQAFGDCLREYTD 312          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA)

HSP 1 Score: 303 bits (775), Expect = 2.030e-96
Identity = 149/290 (51.38%), Postives = 201/290 (69.31%), Query Frame = 1
Query:  151 RGQLLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGS-YVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDK-FKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKS-FGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINK-EGDWGLNSDAERQAFGDSVNKYS-NVIPQ 1005
            RG L+IG++D+  + P  R+  +GAKFQ V K+Q V  +  +Y +LV+PHL+AG   V++ EF D + + +L+ I +G +D YL KF+DE   DGNR VW+RP+HEFNGDWYP GTYR G+++ + FKRA+RHV  +  N+GAN KFQLAYNC N +ND  + F  WWPG+  VDMVVCSGYNRAG DADHQ+W +F +V+ + Y +M  LPG+KPLG+ E S   ++   K QWIRDAF   V  + R+  + WFL NK +G W LNS  E  AFG+S+ +Y+   IPQ
Sbjct:   67 RGPLMIGLSDN--MLPVARQAELGAKFQAVVKFQSVQKM--RYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYTPQNIPQ 352          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A835YW31_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW31_9STRA)

HSP 1 Score: 283 bits (724), Expect = 8.330e-91
Identity = 129/238 (54.20%), Postives = 169/238 (71.01%), Query Frame = 1
Query:  277 YQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTG-NSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKY 987
            Y   V+P L+    VVL+ +FD   Y +LQ IGDG +D+ LN+FID W+ DGNR + IRPMHEFNGDWYP GT+R G NS D FKRA++HV  VF+ RGAN K QLAYNCD+A+ND   F  W+PG   VD+++CS YNR+GL+     W+SF +V+  GY++MA++PG KPLG+ E  ST W    KP WI DAF+ +V K+TRV++ +W L NKEGDW LN+D +  AFGD + K+
Sbjct:    2 YWNTVKPALDKVDDVVLVVQFDTYDYTNLQEIGDGRYDASLNQFIDAWKDDGNRRLSIRPMHEFNGDWYPWGTFRGGGNSKDNFKRAFQHVAGVFKRRGANVKMQLAYNCDSAQNDGSPFADWYPGDDVVDIILCSAYNRSGLEG--HGWESFDEVFGGGYDRMASIPGNKPLGLGETGSTDWGG-DKPAWISDAFNQLVYKYTRVQECHWLLENKEGDWDLNTDGDVWAFGDGMRKF 236          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA)

HSP 1 Score: 282 bits (721), Expect = 3.200e-90
Identity = 132/226 (58.41%), Postives = 162/226 (71.68%), Query Frame = 1
Query:  319 VVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTG-NSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEG--DWGLNSDAERQAFGDSVNKY 987
            VVL+ +     Y  LQA+G+G +D  LN FIDEW+ADGNR + IRPMHEFNGDWY  GTYR G NS   FKRAY HV  +FR RGANA  QL+YNC N  +D  SF  W+PG   VDMV+CS YNRAG+D+DHQKW++F  V+  GY +MAALPG K LG+AEM +T+W  +SK QWIRDAF A+V ++TRV +  W L NK+G  DW LN+ +E  AFG S+ KY
Sbjct:    2 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 227          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA)

HSP 1 Score: 281 bits (718), Expect = 2.680e-88
Identity = 149/312 (47.76%), Postives = 192/312 (61.54%), Query Frame = 1
Query:  133 ESHRSLRGQLLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTG-NSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKS-FGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKE-GDWGLNSDAERQAFGDSVNKYS-----NVIPQRRSLDDAASAGAV 1044
            +S R+    L +GIAD   + P  RE+ + A+FQ V K+  +  +  +Y +LV+ +L+ G  VVL+ +F D    +L+ IGDG +D YL KF DE   DGNR VW+RPMHEFNGDWYP GTY  G N+   F RAYRHV  V   +GAN KFQL YNC N  ND K+ F  WWPG   VDMVVCS YNRAG D  H +WQ++ DV+  GY++MAALP   PLG+ EM +       K  WIRDAF A  T + RV Q+ WFL +K+ G+W LNS  E +AF DS+ +Y+      V+P    L D    G +
Sbjct:   19 QSPRAPFSLLDVGIAD--ILEPVYREEELNAQFQVVTKFGFIKTM--RYPFLVKNYLDQGFKVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYTPQGLPQVLPAVVPLQDVNGDGLI 326          
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA)

HSP 1 Score: 294 bits (752), Expect = 3.430e-85
Identity = 149/307 (48.53%), Postives = 194/307 (63.19%), Query Frame = 1
Query:  166 IGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYV-DLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTG-NSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARND-SKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGD--WGLNSDAERQAFGDSVNKYS------NVIPQRRSLDDAASAGAVTAD 1053
            + IA    + P  R+  +GA+FQ V K+Q V  +  +Y +LV+P+L+ G  VV++TEF D   + +L  IG G +D YL +F+DE +ADGN+ VWIRPMHEFNGDWYP GTY  G N+   F RA+RHV  VF  + AN KFQLAYNCDN ++D +  F  WWPG   VDMVVCSGYNRAG D +H +W +F DVY + Y +M ALPG KPLG+ EMS   ++ Y K QWI DAF   V  + RV+Q+ WFL NKEGD  W LNS  +  AF + +  Y+       ++P    L D    G +  D
Sbjct: 1038 VDIAILDEMEPNARQAELGAQFQVVVKFQPVQSM--RYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYTPQNQVQTLLPLLAPLADVNFDGVINGD 1342          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167009 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS57_9STRA1.090e-285100.00Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YVC0_9STRA1.200e-14575.10Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YZR6_9STRA4.510e-13862.73GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YT60_9STRA7.760e-12463.18Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A836CJI7_9STRA6.290e-9855.12Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CGL5_9STRA2.030e-9651.38Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YW31_9STRA8.330e-9154.20Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YXK1_9STRA3.200e-9058.41Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YWE9_9STRA2.680e-8847.76Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z6S0_9STRA3.430e-8548.53GH26 domain-containing protein n=1 Tax=Tribonema m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:899368..903888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167009|e_gw1.47.179.1
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
KEGG koko:K01179
EC3.2.1.4
GOsGO:0003674,GO:0003824,GO:0004553,GO:0008810,GO:0016787,GO:0016798
Preferred namecelH
DescriptionBelongs to the glycosyl hydrolase 26 family
COG categoryG
Max annot lvl186801|Clostridia
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria,1U8S3@1239|Firmicutes,24CGR@186801|Clostridia,36HBM@31979|Clostridiaceae
Evalue1.67e-36
Seed ortholog573061.Clocel_1175
Hectar predicted targeting categoryother localisation
TranscriptId167331
TrackFilteredModels1
ProteinId167009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167009gene_6305Tribonema minus UTEX_B_3156 geneContig_47 899368..903888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167009Trimin1|167009|e_gw1.47.179.1Tribonema minus UTEX_B_3156 polypeptideContig_47 899368..903888 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6305_1exon_6305_1Tribonema minus UTEX_B_3156 exonContig_47 899368..899587 +
exon_6305_2exon_6305_2Tribonema minus UTEX_B_3156 exonContig_47 899925..900176 +
exon_6305_3exon_6305_3Tribonema minus UTEX_B_3156 exonContig_47 901471..901681 +
exon_6305_4exon_6305_4Tribonema minus UTEX_B_3156 exonContig_47 902290..902505 +
exon_6305_5exon_6305_5Tribonema minus UTEX_B_3156 exonContig_47 903528..903888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6305CDS_6305Tribonema minus UTEX_B_3156 CDSContig_47 899368..899587 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6305 ID=mRNA_6305|Name=jgi.p|Trimin1|167009|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1260bp|location=Sequence derived from alignment at Contig_47:899368..903888+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGAATCAATCGGATCGCCTTGGTAACAAGATCGGACGCGGTTC
GGTCAGCAACGAGGAACCTCCCGCCCCTCTGCTGGAGCTTCAAGACTTTC
TGAACGTCCCTCAGCGGCGACGCGTCACCGATGAATCCCACAGGAGCCTT
CGTGGCCAACTCTTGATCGGCATCGCCGACGATTCAAGCATATCTCCTAC
CGACCGAGAGAAATTGATCGGCGCCAAGTTCCAGACGGTCCAGAAGTACC
AGAAGGTGAGCGACCTCCCCGGCAAGTACCAGTACCTCGTCGAGCCGCAC
CTCAACGCGGGCAGGACCGTCGTGCTCATGACCGAGTTCGACGACGGCAG
CTACGTGGACCTGCAGGCGATCGGCGACGGCGCGTTCGACTCGTACCTCA
ACAAGTTCATCGACGAGTGGCAGGCCGACGGCAACCGCACCGTGTGGATC
CGCCCCATGCACGAGTTCAACGGCGACTGGTACCCGTGCGGTACGTACCG
CACCGGCAACAGCAGCGACAAGTTCAAGCGCGCGTACCGCCACGTGGTGA
GCGTCTTCCGCAACCGCGGCGCCAACGCCAAGTTCCAGCTCGCGTACAAC
TGCGACAACGCGCGCAATGACAGCAAGAGCTTCGGCGTCTGGTGGCCGGG
GAAATACGCGGTGGACATGGTCGTGTGCAGCGGTTACAACCGCGCCGGCC
TTGACGCAGACCACCAAAAGTGGCAGAGCTTCAGCGACGTCTACAGCAGC
GGCTACAACAAGATGGCAGCGCTCCCCGGACTCAAGCCGCTGGGCATCGC
CGAGATGAGCTCCACGACGTGGCAGTCGTACAGCAAGCCGCAGTGGATTC
GCGACGCGTTCGACGCCGTCGTCACCAAGTTCACGCGCGTCCGGCAACTC
AACTGGTTCCTCATCAACAAGGAGGGCGACTGGGGGCTCAACAGCGACGC
GGAGCGCCAGGCATTCGGGGACTCCGTCAACAAGTACAGTAACGTCATCC
CCCAAAGGCGCTCGTTGGACGATGCCGCCTCTGCCGGCGCTGTAACTGCC
GACAATGTAAATGCCGACGATGTAACTGCCGACAATGTAACTGCTGGCGA
TGTAACTGCCGTCGACGCTGATGTAACTGGCAGCGCCGTGCCCGCCGTAA
CCGTCAGCACCGTACCTGCTGCTGGTGGCGCTGCTGCGGCTGCGTCCGCC
GCAGCCGTGCTGGATGATGCCGCCGCGAATGAAGACGCGCTGACAGCGTC
TACGCCGTAA
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protein sequence of jgi.p|Trimin1|167009

>Trimin1|167009|e_gw1.47.179.1 ID=Trimin1|167009|e_gw1.47.179.1|Name=jgi.p|Trimin1|167009|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=420bp
MLLNQSDRLGNKIGRGSVSNEEPPAPLLELQDFLNVPQRRRVTDESHRSL
RGQLLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPH
LNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWI
RPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYN
CDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSS
GYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQL
NWFLINKEGDWGLNSDAERQAFGDSVNKYSNVIPQRRSLDDAASAGAVTA
DNVNADDVTADNVTAGDVTAVDADVTGSAVPAVTVSTVPAAGGAAAAASA
AAVLDDAAANEDALTASTP*
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mRNA from alignment at Contig_47:899368..903888+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6305 ID=mRNA_6305|Name=jgi.p|Trimin1|167009|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4521bp|location=Sequence derived from alignment at Contig_47:899368..903888+ (Tribonema minus UTEX_B_3156 )
ATGCTGCTGAATCAATCGGATCGCCTTGGTAACAAGATCGGACGCGGTTC GGTCAGCAACGAGGAACCTCCCGCCCCTCTGCTGGAGCTTCAAGACTTTC TGAACGTCCCTCAGCGGCGACGCGTCACCGATGAATCCCACAGGAGCCTT CGTGGCCAACTCTTGATCGGCATCGCCGACGATTCAAGCATATCTCCTAC CGACCGAGAGAAATTGATCGGTGAGCACAGCAAGTTCAAGACAGCAACGA TCTGCTGCAGCTTCTCGTCATCAACTGTTGTGCCTCATTCATCACCTAGC ATGCTGCTGGAAATTGCACGATTCTGGAGAAAGTGTTGTCCTGCCACATG CAAAAAACTGGTTGCAACGGCTACAACTGAGTGCGACTGTGTGTACCCAT CGACTGCGTCTCATGCACCACGCCGCAGCAAGCTGTTGTTGAGTTGCATT CAGACTTCAACAGTTGCTACATATACCCTTGAGCCGGCCGCGTTGCATCT TTGCAACGACCTCTCATCAATACCATGTTGCCCCCTTGCGCGCCTCGCGT GCCGCAGGCGCCAAGTTCCAGACGGTCCAGAAGTACCAGAAGGTGAGCGA CCTCCCCGGCAAGTACCAGTACCTCGTCGAGCCGCACCTCAACGCGGGCA GGACCGTCGTGCTCATGACCGAGTTCGACGACGGCAGCTACGTGGACCTG CAGGCGATCGGCGACGGCGCGTTCGACTCGTACCTCAACAAGTTCATCGA CGAGTGGCAGGCCGACGGCAACCGCACCGTGTGGATCCGCCCCATGCACG AGTTCAACGGTGAGAGATGAATTCATGAATGTGAGGCGTGCGTCGCTCGC GCCAGTTGCAGCCACGGAGCTGGCGAGCGTCAGTGCGGCCGCAGGCAGCG CAGGCAGGCCCGAGTTGTAGGTGGTGGTGACCTCAGTTGATGACCACAGC AGACAGGAGACGGAGCTTGCCCTGTTGCTGCGCTGATTGTCAAAACGCCT GCATACTAGCCTTCCGCAGGCTCTGAGCCAGTTGGCCGACGAGTGGATGG GCAATGCTCGCCATACACATTGCCGCCTTTGGGCAAGCTACAACAGTGAT GACGGTTGTGTTTTACAGTACTTATTTCAAGTACATCACGTCTGGACAGT TGAGATTTTCAAAAGATCCCTGCAGCCTCATAGCATCGCCATGGCTTGCT CACATGCCTGGGCCGGCCCATCAATGAGCTGCATATGGCAGTGGTATAAT GGCGTGTGGCAACTACATGTCGCATTACACCTCACTTTTGCGTCCACTGC GGCAGTAATACGCCAGTGAGAAACCAACCGTACACAGTGACCACAATGCA TTGATGACGTCTCCCGAATAAGCCATTGCAGAGTAGCACTGCATGCACAT TCTGCCCGCAATCATGCCCGCAATTCTACTATATCATCTGAAGTGTGTGG CATCATGACTCACCAATGTGCCATTTCACATCACCGGCGCAGAAAGCATC AGACAAGCTCGCCGTTGCATCTCCAGGCAGTCAGGAAAGCGAGTCATGGC ATCAGGCGCACACACATGTTCAGGAGTGGCAGCCATTGTACATTTGAACA ATCATCGCTTAGGGCGCGGAAAGGCCCAGAAGGTTGATGTCAAGCTTGCT AGTCTGCATGTAAGTTTTGTAACTTGAAGTTGAACTTGAAGTGTCTAATC TGCGCATCGACGATCACCTCAGCCGTTGTACTTCTCACAGCGCCCAACCA GCGCCAACACAAGGTTGTACTACGAGGTGCGTGCTCACGTGACTCTAGCA CATGGGGCGACAGGGGGAGGGGCGCCATGTCCCCTAGGTCACTCAATTCT GAACATCAACTTCAATGTGCTGTCGCCGTCCGCTACAGGCAACTGGTGCT CACCACAGCATTGTCCCGCACCATCGCACGCTGCTCAGCGCTGCAGTCGT TGTACTACTCACAGCGCCCCAACGCCGCCAGCGCGAGCTTGCACTGCCAG TGGCAGCGCACATGTGACGCCAGGGGCAGCGCTCATCTTACTGGTGACGT CCCTTCGGTCCACTCAGCTTCTAAACTTGAACTTCAATCTGGTGCCGCTG CAGGCGACTGGTACCCGTGCGGTACGTACCGCACCGGCAACAGCAGCGAC AAGTTCAAGCGCGCGTACCGCCACGTGGTGAGCGTCTTCCGCAACCGCGG CGCCAACGCCAAGTTCCAGCTCGCGTACAACTGCGACAACGCGCGCAATG ACAGCAAGAGCTTCGGCGTCTGGTGGCCGGGGAAATACGCGGTGGACATG GTCGTGTGCAGCGGGTGAGTGCACCTGAACTCTGCCTGTACTGTTGGTGT ACCCAGGGGTTGCCTGTGCTGCTGCCGGTACTGCGGTCTGTGAGCGGAAG CGCTGCTCGCTGGAATGCTGCTGTCCAGGAGCGTGTGGTGTTTGCATCAC GGTATGCATATACGCACAAGCGTCACCTGAAGCCACTACCTCATGGAGTA TGAAGCATGCTCTTGTAGTACTACCATTGGAGTACGCTGCCGTAATTTGT TACAGCCGCTGCGCTCGTTGCGCTGATGCCTGTACTGCCATACCTCACTG AACCTGTTCAGCCCTGGCGCCAAAAACTGACACCACAAGCGGCTCAAATC TGCTGCTTGAACAGAATCACCTGCAGCGCTCCCTGCCCAAAGCAGCAGCA GTATGGGACGTTTCTTGCGATGTCCCCGATCTGATCTCGCGTGACGTTGT GAAGCATTGTTCCATCACTTTCATGTGAATCCAATCTAGACCAGTGCCCT ACAGCACCCACCTCATCGTCTCTACGCAGCGTCTTGTCAAAGCACAAGCC CAATCACCCTTACGCTCCGTATCACTGACGCCGACCCCTACGTTCCTGCT TCTCCCCCCCCCCCTCCGCCAGTTACAACCGCGCCGGCCTTGACGCAGAC CACCAAAAGTGGCAGAGCTTCAGCGACGTCTACAGCAGCGGCTACAACAA GATGGCAGCGCTCCCCGGACTCAAGCCGCTGGGCATCGCCGAGATGAGCT CCACGACGTGGCAGTCGTACAGCAAGCCGCAGTGGATTCGCGACGCGTTC GACGCCGTCGTCACCAAGTTCACGCGCGTCCGGCAACTGTGAGTGTCACT CACCGTCTTTTGTTCACATCGTCTTCAAGCCTTACTTCAAGTACTTCAAA CGTTTGGTGTTGAGTTTACGGGCGCCCACCAACTGTGAGTGTTTCTTGCG ATTGGTGGTCGCGTTGCCGTCTTGATCATCTCTTCGAGGTTTAAGTTCAA GTGCTTCAAAGTGTAGTGTTGAGTTTGTGCACGCCCAACAACTGTGAGCC TTTGTTGCGAGCGCTGGTGGCGCTGGGCAAAGTGAAGAACTTCACCGCTG CGCTCGGGCTGATGTTCACCGTATGTTCTTCCAAGTGCTTGTTCGTATTG AACAAACCGATGAGGCTAAGCAGCAGTGCTCAGCGGCAGGCAGACGTATT GCACATGTCTCAAAGCTAGTGTTGCCGTGTTGCAAGCGCCACTGGATTTG CATTGTCTTCAGGAGCGTCAAGCATTCGCAGCAGTTGTGGGCCAGCTTGA TGGGCGTGCCTGCGGGAATGCACCGGGGTCTCACCGGGATGCGTGAGCAC TCACCGGCAGATTTTGCCGTAATCATTTTGATTCCACGGTGGTCACTGCA CTTTTAAACTAGACGGATCACATTCACTACATCGCGGAAGTGTGACACAT GGAAGATGCTGAGCACTGCATCAGTGCATGCGCAGCTGAGTAAGTGCAGA AATGCGATGTCATTGGAAAACATGACCCAAAGCCCCCCCCTTCCTACGCG TTGCATGTTGAGGCCGTAATGCTGAGGCAGTCGATCCCTCTGCTCAACAG TTTGTGTGCACTGCTGACCCAACGCTGCTTTACAGTGCTCGAGAATGTGA CGACGCACACGCACACCTGGATTCACATCACCCTCAGGCAGGCGGTTGCG TTGTGCCGCGTCAGTAACCACGAGTGCTGCAGCAGCGCAAAGTGCGCAAG CTCAATGGTCACTCATACTCACACTTGACATTGAAGTTTATCGTCAGCAG TGCTCATCGCTGCCGTTCTGCCCCCGTCCCCCCTCCCCCCCCCCTCTCCC CCACCTGCAGCAACTGGTTCCTCATCAACAAGGAGGGCGACTGGGGGCTC AACAGCGACGCGGAGCGCCAGGCATTCGGGGACTCCGTCAACAAGTACAG TAACGTCATCCCCCAAAGGCGCTCGTTGGACGATGCCGCCTCTGCCGGCG CTGTAACTGCCGACAATGTAAATGCCGACGATGTAACTGCCGACAATGTA ACTGCTGGCGATGTAACTGCCGTCGACGCTGATGTAACTGGCAGCGCCGT GCCCGCCGTAACCGTCAGCACCGTACCTGCTGCTGGTGGCGCTGCTGCGG CTGCGTCCGCCGCAGCCGTGCTGGATGATGCCGCCGCGAATGAAGACGCG CTGACAGCGTCTACGCCGTAA
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Coding sequence (CDS) from alignment at Contig_47:899368..903888+

>mRNA_6305 ID=mRNA_6305|Name=jgi.p|Trimin1|167009|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1260bp|location=Sequence derived from alignment at Contig_47:899368..903888+ (Tribonema minus UTEX_B_3156 )
ATGCTGCTGAATCAATCGGATCGCCTTGGTAACAAGATCGGACGCGGTTC
GGTCAGCAACGAGGAACCTCCCGCCCCTCTGCTGGAGCTTCAAGACTTTC
TGAACGTCCCTCAGCGGCGACGCGTCACCGATGAATCCCACAGGAGCCTT
CGTGGCCAACTCTTGATCGGCATCGCCGACGATTCAAGCATATCTCCTAC
CGACCGAGAGAAATTGATCGGCGCCAAGTTCCAGACGGTCCAGAAGTACC
AGAAGGTGAGCGACCTCCCCGGCAAGTACCAGTACCTCGTCGAGCCGCAC
CTCAACGCGGGCAGGACCGTCGTGCTCATGACCGAGTTCGACGACGGCAG
CTACGTGGACCTGCAGGCGATCGGCGACGGCGCGTTCGACTCGTACCTCA
ACAAGTTCATCGACGAGTGGCAGGCCGACGGCAACCGCACCGTGTGGATC
CGCCCCATGCACGAGTTCAACGGCGACTGGTACCCGTGCGGTACGTACCG
CACCGGCAACAGCAGCGACAAGTTCAAGCGCGCGTACCGCCACGTGGTGA
GCGTCTTCCGCAACCGCGGCGCCAACGCCAAGTTCCAGCTCGCGTACAAC
TGCGACAACGCGCGCAATGACAGCAAGAGCTTCGGCGTCTGGTGGCCGGG
GAAATACGCGGTGGACATGGTCGTGTGCAGCGGTTACAACCGCGCCGGCC
TTGACGCAGACCACCAAAAGTGGCAGAGCTTCAGCGACGTCTACAGCAGC
GGCTACAACAAGATGGCAGCGCTCCCCGGACTCAAGCCGCTGGGCATCGC
CGAGATGAGCTCCACGACGTGGCAGTCGTACAGCAAGCCGCAGTGGATTC
GCGACGCGTTCGACGCCGTCGTCACCAAGTTCACGCGCGTCCGGCAACTC
AACTGGTTCCTCATCAACAAGGAGGGCGACTGGGGGCTCAACAGCGACGC
GGAGCGCCAGGCATTCGGGGACTCCGTCAACAAGTACAGTAACGTCATCC
CCCAAAGGCGCTCGTTGGACGATGCCGCCTCTGCCGGCGCTGTAACTGCC
GACAATGTAAATGCCGACGATGTAACTGCCGACAATGTAACTGCTGGCGA
TGTAACTGCCGTCGACGCTGATGTAACTGGCAGCGCCGTGCCCGCCGTAA
CCGTCAGCACCGTACCTGCTGCTGGTGGCGCTGCTGCGGCTGCGTCCGCC
GCAGCCGTGCTGGATGATGCCGCCGCGAATGAAGACGCGCTGACAGCGTC
TACGCCGTAA
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