mRNA_6285 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|70644
Unique NamemRNA_6285
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A835YRD8_9STRA (Putative glutathione S-transferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRD8_9STRA)

HSP 1 Score: 427 bits (1099), Expect = 8.600e-151
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 3 
Query:   78 MAPPKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHKSRT 722
            MAPPKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHKSRT
Sbjct:    1 MAPPKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHKSRT 215
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A835YRP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP1_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.930e-90
Identity = 145/226 (64.16%), Postives = 170/226 (75.22%), Query Frame = 3 
Query:   87 PKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYL---------------AAIDARLQDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHKSR 719
            PKYTLHYF+  GRAEP+RLA A+CGV FTD+R  RDE    KASGF PYG VP+LEVE EDGKK+VIAE +AIMAYIVAAHGAA GMARTDPLDIARVEEIRSA D M ++I+ TM EKDE KK+A+RAELA+T +PR                 AAIDARL+  G+V GDTLT+AD+ L+  VAWL+ G+LDGIPTT+V  Y  V +C ANVR HPRV  W+ S+
Sbjct:    3 PKYTLHYFNFTGRAEPVRLALAICGVPFTDKRITRDELMAGKASGFLPYGTVPILEVEMEDGKKDVIAETAAIMAYIVAAHGAAAGMARTDPLDIARVEEIRSAADGMFARIAATMSEKDEAKKMAVRAELAATVIPRXXXXXXXXXXXXXXXXXAAIDARLRPDGHVCGDTLTSADLILDGIVAWLALGVLDGIPTTLVAPYANVERCRANVRAHPRVREWYASK 228
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A835YS97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS97_9STRA)

HSP 1 Score: 266 bits (681), Expect = 3.280e-87
Identity = 138/209 (66.03%), Postives = 161/209 (77.03%), Query Frame = 3 
Query:   93 YTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHKSR 719
            YTLHYF+ +GR EPLRLA A+CGV F D+R +  E    KASGF PYG VPVLEVE +   K VIAE S IMAYIVA HGAAGGMARTDPLDIARVEEIRSATDAM++ + P++ EKDE +K+AMRAELA+  LP+ LAAIDARLQ SGY SG +LTAAD+ L+ AV WL+ G LDGIP TI D Y  + +C  NVR HP V AW+KS+
Sbjct:    3 YTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVE-KGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKSQ 210
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A836CC62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC62_9STRA)

HSP 1 Score: 201 bits (511), Expect = 3.660e-60
Identity = 103/159 (64.78%), Postives = 124/159 (77.99%), Query Frame = 3 
Query:  243 PVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHKSR 719
            P   V+ +DG   +IAE SAI+ YIVAAHGAA GM R DPL+ ARVEE RSA D++ +K+S TM+EKDE +K+A RAELA+TTLP+ LAAIDARLQDSGY SGDT+T ADI + EAV  +  G+L+GIPT +   Y R+ KCAANVR HPRVVAWHKSR
Sbjct:  147 PPARVKGDDGATTIIAETSAILGYIVAAHGAAAGMQRADPLEAARVEEFRSAIDSLGAKLSATMYEKDEARKMAARAELAATTLPKGLAAIDARLQDSGYASGDTVTVADIAVSEAVRRVESGVLEGIPTDLAAPYARIAKCAANVRGHPRVVAWHKSR 305
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A0G4J4B5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J4B5_PLABS)

HSP 1 Score: 147 bits (372), Expect = 1.590e-40
Identity = 87/215 (40.47%), Postives = 120/215 (55.81%), Query Frame = 3 
Query:   78 MAPPKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDS---GYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHK 713
            M  P   L YFDM GRAE +RLA  V GV +   R ARD+WP +K     P+G +PV+   T DG +   A+  A++ Y+ A     G M    P+D  +V++I  A   +V+ + P++ E D +KK+AMR ELA TTLP  L  ID  L  +   GY  G T+T ADI+L     W   G++DGIP  ++D YP + K    V +HP+V  W K
Sbjct:    1 MPSPSIKLTYFDMPGRAETIRLALHVAGVPYEFERVARDQWPSLKPK--TPFGGLPVM---TIDGVQ--YAQTHALLRYVAAI----GKMEPATPIDRLKVDQIIEANTDIVTALMPSLREPDAQKKMAMRKELADTTLPPLLKGIDRALGQNATPGYTCGSTITIADISLWGLTQWFRSGMIDGIPKDLIDGYPAIAKVVQTVGEHPKVAEWVK 204
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A061SAH2_9CHLO (Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAH2_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 8.640e-39
Identity = 82/206 (39.81%), Postives = 121/206 (58.74%), Query Frame = 3 
Query:   99 LHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQD---SGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAW 707
            L YFD  G AEP+RLAFAV G++F D RF R++WP++K     PYG VP L +        V A+ +AI+ Y     G   G+  TDP++   V++I  A + M   + PT+ E+DE+KK+ MR  LA  TLP++L   +  +++   SGY+ GD+LT AD+ L   +  L+ G+LDGIP TI + +P+V      V    +V A+
Sbjct:    5 LSYFDFKGVAEPIRLAFAVGGIDFEDHRFQREDWPQLKPK--TPYGSVPTLTIGDR-----VYAQSNAILRYA----GKLAGLYPTDPVEALAVDQIVDALEDMFLHVKPTVQEQDEKKKMEMRKVLAEETLPKWLGYFNKHIEENGSSGYIVGDSLTIADLKLYTLIGLLTSGMLDGIPKTIAEPFPKVTALLEKVGADEKVKAF 199
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: F2U7D3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7D3_SALR5)

HSP 1 Score: 142 bits (357), Expect = 8.810e-37
Identity = 84/208 (40.38%), Postives = 128/208 (61.54%), Query Frame = 3 
Query:   87 PKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGYVSG-DTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAW 707
            PKY L YFD+ GRAEP RLAF + GVEF D R +RD+W ++K     PYG +P+L+V   DG  ++IA+ SAI+ ++    G    +   D ++ ARV+E+    + +   I PT+ E+D E+K+AMR ELA+  LPR+LA ++ +  + GYV G D ++ AD+     + WL+ G++DGIP TIVD +  +    A +   P + A+
Sbjct:   28 PKYRLVYFDIRGRAEPARLAFHLAGVEFADVRVSRDQWCKLKPKC--PYGQLPILQV---DG--QIIAQSSAIIRFV----GKKTNLYPEDHMEAARVDEVIGLIEDINWLIIPTIKERDMERKLAMRRELATDLLPRWLAVLNCKFSN-GYVLGPDRISIADLTAFTLIGWLTMGVMDGIPKTIVDKHANLKALQARIAKQPNLQAY 223
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A024UKT9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKT9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.200e-36
Identity = 87/217 (40.09%), Postives = 124/217 (57.14%), Query Frame = 3 
Query:   78 MAPPKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDP-LDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGYVSG---DTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHKS 716
            M+ P   + YFDMAGRAE +RLA  + GV F D RF R+EWP +K +   P+  VP L   T DG  +V+ +  AI  Y     G+  G+  T+  LD  RV+EI    + ++ K++P+  E D  KK AMR ELA+TT P     +DARL   G       +++T AD+++   V+ +  G LD IPTTI D YP+++     V  HP VVAW+++
Sbjct:    1 MSFPSLKVSYFDMAGRAETVRLALTIGGVPFEDHRFQREEWPALKQT--LPFKQVPAL---TVDG--QVLCQSHAIARYA----GSLAGLYPTENRLDACRVDEISDFCEDVMQKVAPSFREADPAKKKAMREELAATTFPEMFGMLDARLASYGSNGPWFLNSITIADLDVYCFVSMMKSGFLDDIPTTICDGYPKIMAIYNAVAAHPAVVAWNEA 206
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A1V9YBM9_9STRA (Glutathione S-transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBM9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.250e-36
Identity = 90/216 (41.67%), Postives = 117/216 (54.17%), Query Frame = 3 
Query:   66 PSANMAPPKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARL--QDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAW 707
            P A+M  P   + YFD+ GRAE  RLA  V G+ F D R  RD++  +K S   P+  +P L V  E     V A+  A+  Y     G   G+   D LD  RV+EI  A+D  ++K+ P++ E+D  K+ AMR EL S TLP + A I+ARL      Y  GD LT AD+ L  +   +  G LDGIPT I+DAYPR    A  V  HP V AW
Sbjct:   29 PHASMTHPTLKITYFDLVGRAELTRLALCVAGIPFEDERLTRDQFAIIKPS--LPFKQLPALTVGNE-----VFAQSLAMSRYA----GRLAGLYPADALDAFRVDEILGASDDTLAKLGPSLREQDTAKRSAMRQEL-SATLPEHFACIEARLATHKGPYFLGDALTIADLELYASRQMIRSGWLDGIPTGILDAYPRWNAIADAVAAHPNVAAW 232
[Close]
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Match: A0A7R9TRL6_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TRL6_9VIRI)

HSP 1 Score: 134 bits (336), Expect = 5.930e-35
Identity = 82/219 (37.44%), Postives = 124/219 (56.62%), Query Frame = 3 
Query:   66 PSANMAPPKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGY---VSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHK 713
            P A        + YFD+ G+AE +RLAFA+ GV+FTD R    EW E K +    + ++P L +   +G++  + + +AI+ +     G   G+  +D ++   V+EI  A +   + I  ++ EKD EKK AMRAELA+ T+P +L   +AR  ++G    + G +LT AD+ L     WLS GILDGIPTTI++ Y  + K  A V  HP+V  + K
Sbjct:    5 PGAMAPVSNVCIKYFDIKGKAEYVRLAFAIGGVDFTDERVPFAEWKETKPN--MRWHYLPELTLTNAEGEQVTVGQSNAILRFA----GKLTGLYPSDDVEALMVDEILEAIEDARTPIRASLQEKDVEKKEAMRAELATETIPYWLRLFEARAVENGSNGCICGPSLTIADLALYVLCNWLSSGILDGIPTTILEPYEGINKIVAAVAGHPKVAEFEK 217
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|70644 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRD8_9STRA8.600e-151100.00Putative glutathione S-transferase n=2 Tax=Tribone... [more]
A0A835YRP1_9STRA1.930e-9064.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YS97_9STRA3.280e-8766.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CC62_9STRA3.660e-6064.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4J4B5_PLABS1.590e-4040.47Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A061SAH2_9CHLO8.640e-3939.81Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis s... [more]
F2U7D3_SALR58.810e-3740.38Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A024UKT9_9STRA1.200e-3640.09Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9YBM9_9STRA5.250e-3641.67Glutathione S-transferase n=1 Tax=Achlya hypogyna ... [more]
A0A7R9TRL6_9VIRI5.930e-3537.44Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:776509..780728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|70644|CE70643_53
BRITEko00000,ko00001,ko01000
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko01100,ko05204,map00480,map00590,map00980,map00982,map01100,map05204
KEGG koko:K04097
EC2.5.1.18,5.3.99.2
DescriptionGlutathione S-transferase, C-terminal domain
COG categoryO
Max annot lvl33154|Opisthokonta
EggNOG OGsKOG1695@1|root,KOG1695@2759|Eukaryota,3A52M@33154|Opisthokonta
Evalue2.43e-38
Seed ortholog946362.XP_004994854.1
Hectar predicted targeting categoryother localisation
TranscriptId70966
TrackFilteredModels1
ProteinId70644
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|70644gene_6285Tribonema minus UTEX_B_3156 geneContig_47 776509..780728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|70644Trimin1|70644|CE70643_53Tribonema minus UTEX_B_3156 polypeptideContig_47 776541..780354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6285_5exon_6285_5Tribonema minus UTEX_B_3156 exonContig_47 776509..776766 -
exon_6285_4exon_6285_4Tribonema minus UTEX_B_3156 exonContig_47 778044..778288 -
exon_6285_3exon_6285_3Tribonema minus UTEX_B_3156 exonContig_47 779740..779862 -
exon_6285_2exon_6285_2Tribonema minus UTEX_B_3156 exonContig_47 780301..780369 -
exon_6285_1exon_6285_1Tribonema minus UTEX_B_3156 exonContig_47 780667..780728 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6285UTR3_6285Tribonema minus UTEX_B_3156 three_prime_UTRContig_47 776509..776540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6285CDS_6285Tribonema minus UTEX_B_3156 CDSContig_47 780301..780354 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6285UTR5_6285Tribonema minus UTEX_B_3156 five_prime_UTRContig_47 780667..780728 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6285 ID=mRNA_6285|Name=jgi.p|Trimin1|70644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=757bp|location=Sequence derived from alignment at Contig_47:776509..780728- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGTGTGCGCTTGCCTGATCACACAACACACATCTCGAAGAGAAGGCCGAA
CAAGTCATCAAGCACCCGAGTGCAAACATGGCGCCTCCCAAGTACACGCT
GCACTACTTCGACATGGCCGGCCGTGCTGAGCCTTTGAGACTGGCATTCG
CGGTCTGCGGCGTGGAGTTCACGGACCGGCGCTTCGCCCGCGACGAGTGG
CCGGAGGTCAAAGCCAGCGGCTTCCCGCCCTATGGGCACGTGCCTGTGCT
CGAGGTGGAGACGGAGGACGGCAAGAAGGAGGTCATCGCAGAGTTCTCGG
CCATCATGGCGTACATCGTCGCCGCGCACGGCGCCGCGGGCGGCATGGCG
CGCACCGACCCCCTGGACATTGCGCGCGTCGAGGAGATACGCAGCGCCAC
CGACGCCATGGTGTCAAAGATCTCGCCGACCATGTGGGAGAAGGACGAGG
AGAAGAAGGTGGCCATGCGCGCGGAGCTCGCCTCCACGACGCTCCCCAGG
TACCTGGCGGCCATCGACGCGCGCCTGCAGGACAGCGGCTACGTGTCCGG
CGACACCCTCACCGCCGCCGACATCAACCTCGAGGAGGCGGTGGCGTGGC
TTAGCAAGGGCATCCTCGACGGCATCCCCACCACCATCGTTGACGCGTAC
CCGCGCGTCCTCAAGTGCGCGGCCAACGTGCGCGACCACCCGCGCGTGGT
CGCCTGGCACAAGAGCCGCACCTGAGCGTACTTCAACACTTGAAGTTGCT
GTTGAAG
back to top

protein sequence of jgi.p|Trimin1|70644

>Trimin1|70644|CE70643_53 ID=Trimin1|70644|CE70643_53|Name=jgi.p|Trimin1|70644|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp
MAPPKYTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFP
PYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIAR
VEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARL
QDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAAN
VRDHPRVVAWHKSRT*
back to top

mRNA from alignment at Contig_47:776509..780728-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6285 ID=mRNA_6285|Name=jgi.p|Trimin1|70644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4220bp|location=Sequence derived from alignment at Contig_47:776509..780728- (Tribonema minus UTEX_B_3156 )
CGTGTGCGCTTGCCTGATCACACAACACACATCTCGAAGAGAAGGCCGAA
CAAGTCATCAAGGTGAGTGCTTGCATGCAGCTGCGCCCCCATTGGCTCAG
CGTTTCAACGTTACCACGGGGGAAAGCCTCTGAGTGTACCGCAAGATTTT
TCGCTCTGTCGAAGTCGGCTTTGTAGACATGCTGTGTGTGCGAAGACATG
CTGTGTGAAGCTTCTGACAAAGCCTATCAGCCCCACAGGCAACTACTTGT
TTTCACACAAGGCATGCATGGTGCAGAGACCATTTGCACCATCATCGCAT
CTTTCGACATCTTTTTCGCCCGCGCCTCATTGCTCGCCGCTGGTAGTCTG
TCGCAGCAGCACCCGAGTGCAAACATGGCGCCTCCCAAGTACACGCTGCA
CTACTTCGACATGGCCGGCCGTGCTGAGGTAAGCTAGATGCCTGGAACCG
TTGCATCCTCACGTGGAACGCGCATGTTGTAAGTTCCCAAAAACTAAAAG
AAAACCATGTACAATATGCTTTGTTGCTATGATGAGGCAGAATTCGGCTC
GGCAAAAGTATCGTGGTACGCAGCCGGCCGGCCTTGCATTTGACCAGTTG
ATATCATTTTGATCACTTATGCATTCCTGTCGCATGTGATTATGCATGCT
GTGTCACGATTCTCATCTATGATGCCAGGCGGATAGACATCAACATGGTC
TGCCTGCGCATGCATAGGCACTTTCAAACGATAACCTTTGCGAGCTGGCC
TCTGCATCCTTGGCAGTCAGCAGAGAACAGAGGGACGCACACACAGCTGC
GCACGTAACGATGACCGCAAGCCCCACCCTGCAAACCTCACTCACTGCCG
CCGCTCACTGCGACAGCCTTTGAGACTGGCATTCGCGGTCTGCGGCGTGG
AGTTCACGGACCGGCGCTTCGCCCGCGACGAGTGGCCGGAGGTCAAAGCC
AGCGGCTTCCCGCCCTATGGGCACGTGCCTGTGCTCGAGGTGCGTCACCC
TTGAACTTGTCAACTACTTCTGATTATTACATTGACGGCACGTGCCTGTG
CTCGAGGCGAGCGCCCGTGTGTCACCTCCTTCCAAGAACATAGACTTTCT
AGGAGTACGCATACTAGGAGTATGCAAATATTCATATGCATGGCCTGCTG
CGCTGATTTCAGTACGTGCATCAACAGGAGGGCCCTTGCCAATCCGTGCC
AACTTGAATTGTGTGTGTGTGCGGTCGTGTGACTCACGCGCATCATGCAC
TCCTGTCAACCCATCTCGCACCATACACGATACACTGTGAAGCGCCGCCC
ATGTGAGGCACCAAGGGCTATTTGGAGCTCAGGCGCTCATGCTCTGAATT
AATTGCGCACAAATGAACAATTGTGTATGCGTGAACAAATTTGTGCACGT
ACTCTTTCGTAATTGTGGCTGGTGTGCCCATCCGCCACGTGCATGCACCT
TACAAGATGCGCATTGGTGTGATTGTCACAAAACACGCCTACCAGTCTAG
TAGAACTGGCTGAGGCCCGAGTGGACCCGTGTAGCTGCGCGCTCATCCAG
AATAATTGTCTGAACACGACCGCGGGACGGCAAGGGGGAGACCATCGCCG
AGTCCTCGGTTATCATGCTGTACAGAGCAGCATGTGCATAGTAAGTGCAC
GTGCCGCAGGACGGCCTCCTCTGCGCGTGCGCACATTGCTCAAGCAGCGT
CCGTTCGCACGCATCAGTGCGAACTCTAGCAAAGTGCTGCTAGTGGCTTA
GGGCTGGGGTTAGGGTTAGCGGATAGGTCAGGGTTTAGGGTTAGGGTTAG
AATTAGGTTTTGTAGCGACTACCCGCCGTGCCCGCGCCCTCATGTCATGG
TTAACGATGGGCGCGCAGCAGGTGAATGACAGGTCCCCTGACTGTACTGC
GTACACACAAAAATCATCGCTGCGAGGACGCCTTCTCGCTGGAGCCTGCT
GCCGCGTCGGCGTCGTAAAGCAGCATCTGCTCTGACAGTCATGGCAGTGT
TGAACTAAACATGAGTTGCTGGTAATGTCCGCGCCGCCGAGCGCGGCGAA
GCCCGCATTCGCTTGCACCGTGCTGCCTTCCGCTTCTCGGGTCCGCGCGA
AAACTTGGACAATAATGTGAAAGGCGATGAAATGGCAGACGGGTTTCCGC
GTTCCGTGGACGCCTCCGAGCACTCTGGAAACCTGACACAGGCACGCAGC
TCCAAACAGAGAGATTAAACTTCAGCCGCCGTGTCCGCGCCTCAGGTGGA
GACGGAGGACAGCAAGCAGGACGTCGTCGCCGCATTCTCCGCCATCATGG
CGTACATTGAGAAAAACACTGCCACGCACAGCCGCCACTCTTGCGTAGAT
TGCTCAGGCAGAATCCACGCAGGGACCCTGACATAGCTTCTCTATCATCA
GTCACCATAAAAATGTTATTCAACATTGTTTGCGCCTCAGGTGGAGACGG
AGGACGGCAAGAAGGAGGTCATCGCAGAGTTCTCGGCCATCATGGCGTAC
ATCGTCGCCGCGCACGGCGCCGCGGGCGGCATGGCGCGCACCGACCCCCT
GGACATTGCGCGCGTCGAGGAGATACGCAGCGCCACCGACGCCATGGTGT
CAAAGATCTCGCCGACCATGTGGGAGAAGGACGAGGAGAAGAAGGTGGCC
ATGCGCGCGGAGCTCGCCTCCACGACGCTCCCCAGGTGAGCGCTGCTGTG
CCTTCAACTGCGCCGTCTGCGCAGTGACGCTCCCCGAGTTTAGTGAAGTT
CCTACTTGCATGAAGTAAGCGGCTTACGCACAGTAGTCAACCCCAAAGCT
CGCATCCACAACGCCCCCGAGTGATTGGCGCTGCTAGTTCAACTGTGCCC
CTGCGCCCGCTTTCATGTGCATGGAAGTAGTGATTACTTGAGCTCTGGAA
GTGTGCGACACTCCTACTTCAACGGTATGTATTGTGTAAGGTACGTGACG
AGAACATTAGAGTTCCAGGCGGGGGAGCTTACATTGACACCAAAAAGGTG
CAGGGAATGCCATTTAACCTTTTAAAAGAATGAAATTGCCATGCAATGCA
CTTGGTGCGCACTGACAGGACTGCTGACTTTCGGCGATTCTTGCTCCGAA
GGTTGGGCTAGTGCATCTTGGTGCATGTGCCGGGCCGCCTTGTGGTTACA
TGCAATGCGCGGATACACCACCTACGCATGATGTTGCTGTGTTTGTGCGT
GCCAACAAACCTGCAGAACTGATTAAGTATTCTGAGCGGGTGTTGCGATG
CATGGCAGACTCCCACATGACTATGCTGCACCGCATAGTCTAGCGGTTGC
GTCTCTGAGCATGCGTGTGCTGGCGCAAGCAGCGCTTGATGCGAACCACA
AGTTGAAGTTCAATTGCCCCTGTGTGGCGGCCCCTGACGTACGTGTGCAC
CCAGCCACTACTGAACTGGCACTGCTTGACATGCACGCACAGTTGCTCCA
CAACTGCTCTGTGGAATGGCAGCTGTTGATCAGGGTGCCTATGACGGGCC
TTTTACACAAGTCCTAGTAGTCCGGCAGTGCAACTTGTAGCAAGTAGAAA
ATTGAATGCATCCTTGACTCCACAGCTACCTGGCACCCATTACATCGAGC
CTGCAGAACACCGGCTGCGCGGGCGTTTCAAATTTTTGTGACGCAACTAT
CCCCGAAGCGAGTAGCAGCTGCCGGGTCGCAGGCACCCAACATGGGCACC
CTGTACATTATATGTTCTTCAAGCACCGTGTATGGGCACTGTCTACACCA
GTATGTCCTTCAAGGCAGTCGCTGCATCATGCCTGTCGCTGCAGGTACAT
GCCTGAACATATCTAGAAGTATGTCAACGTGTTCATTTTATGGAAGCGAA
TCAAAAGATTGTAGAGCGCTATAGGTGACAAGGTGTGCTTAGCCGTCAAA
TTGAATGCCTTCCACCAATGACCGTGGTCGCCGCTGCTGCGCATCATGCC
CTGTCCCCGCAGGTACCTGGCGGCCATCGACGCGCGCCTGCAGGACAGCG
GCTACGTGTCCGGCGACACCCTCACCGCCGCCGACATCAACCTCGAGGAG
GCGGTGGCGTGGCTTAGCAAGGGCATCCTCGACGGCATCCCCACCACCAT
CGTTGACGCGTACCCGCGCGTCCTCAAGTGCGCGGCCAACGTGCGCGACC
ACCCGCGCGTGGTCGCCTGGCACAAGAGCCGCACCTGAGCGTACTTCAAC
ACTTGAAGTTGCTGTTGAAG
back to top

Coding sequence (CDS) from alignment at Contig_47:776509..780728-

>mRNA_6285 ID=mRNA_6285|Name=jgi.p|Trimin1|70644|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_47:776509..780728- (Tribonema minus UTEX_B_3156 )
ATGGCGCCTCCCAAGTACACGCTGCACTACTTCGACATGGCCGGCCGTGC
TGAGCCTTTGAGACTGGCATTCGCGGTCTGCGGCGTGGAGTTCACGGACC
GGCGCTTCGCCCGCGACGAGTGGCCGGAGGTCAAAGCCAGCGGCTTCCCG
CCCTATGGGCACGTGCCTGTGCTCGAGGTGGAGACGGAGGACGGCAAGAA
GGAGGTCATCGCAGAGTTCTCGGCCATCATGGCGTACATCGTCGCCGCGC
ACGGCGCCGCGGGCGGCATGGCGCGCACCGACCCCCTGGACATTGCGCGC
GTCGAGGAGATACGCAGCGCCACCGACGCCATGGTGTCAAAGATCTCGCC
GACCATGTGGGAGAAGGACGAGGAGAAGAAGGTGGCCATGCGCGCGGAGC
TCGCCTCCACGACGCTCCCCAGGTACCTGGCGGCCATCGACGCGCGCCTG
CAGGACAGCGGCTACGTGTCCGGCGACACCCTCACCGCCGCCGACATCAA
CCTCGAGGAGGCGGTGGCGTGGCTTAGCAAGGGCATCCTCGACGGCATCC
CCACCACCATCGTTGACGCGTACCCGCGCGTCCTCAAGTGCGCGGCCAAC
GTGCGCGACCACCCGCGCGTGGTCGCCTGGCACAAGAGCCGCACCTGA
back to top