mRNA_4677 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349652
Unique NamemRNA_4677
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A835YSE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSE7_9STRA)

HSP 1 Score: 978 bits (2527), Expect = 0.000e+0
Identity = 524/524 (100.00%), Postives = 524/524 (100.00%), Query Frame = 1
Query:    1 MPTRYVSSSSGYIRSLYTGKAALQSSRGDSKAMTASRVSWTTPDTAHYMYGNPVLMELGGVTRLLTLGAKQGTLYSAQDKQQTVVGDWGACLLCRQDMFRNVESAAVAGEHTCETLRHTVCGYDGSEQDTNPAAMLTLGTAGGPVIAAWDITEDTLKGPDAHNRIFTDSETGAHGEGVERQALRPLLALAAMATASEGEGLPCKYNLTDAESFETAHGEGFLLASAVPPGGGDPRLLADCSSWKRLEPPGEAPSGAAMFKLMSPTWAVMDGSIRGVKRIAGLHIVFDTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLRGPKTGDKAAAGQPATRTRRWPSLAASSHNVWVREVEGPSRRFSSALFSLPAAAERGVQAAPASPCATSGDKVS 1572
            MPTRYVSSSSGYIRSLYTGKAALQSSRGDSKAMTASRVSWTTPDTAHYMYGNPVLMELGGVTRLLTLGAKQGTLYSAQDKQQTVVGDWGACLLCRQDMFRNVESAAVAGEHTCETLRHTVCGYDGSEQDTNPAAMLTLGTAGGPVIAAWDITEDTLKGPDAHNRIFTDSETGAHGEGVERQALRPLLALAAMATASEGEGLPCKYNLTDAESFETAHGEGFLLASAVPPGGGDPRLLADCSSWKRLEPPGEAPSGAAMFKLMSPTWAVMDGSIRGVKRIAGLHIVFDTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLRGPKTGDKAAAGQPATRTRRWPSLAASSHNVWVREVEGPSRRFSSALFSLPAAAERGVQAAPASPCATSGDKVS
Sbjct:    1 MPTRYVSSSSGYIRSLYTGKAALQSSRGDSKAMTASRVSWTTPDTAHYMYGNPVLMELGGVTRLLTLGAKQGTLYSAQDKQQTVVGDWGACLLCRQDMFRNVESAAVAGEHTCETLRHTVCGYDGSEQDTNPAAMLTLGTAGGPVIAAWDITEDTLKGPDAHNRIFTDSETGAHGEGVERQALRPLLALAAMATASEGEGLPCKYNLTDAESFETAHGEGFLLASAVPPGGGDPRLLADCSSWKRLEPPGEAPSGAAMFKLMSPTWAVMDGSIRGVKRIAGLHIVFDTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLRGPKTGDKAAAGQPATRTRRWPSLAASSHNVWVREVEGPSRRFSSALFSLPAAAERGVQAAPASPCATSGDKVS 524          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A836CDF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.430e-30
Identity = 128/391 (32.74%), Postives = 181/391 (46.29%), Query Frame = 1
Query:  262 WGACLLCRQDMFRNVESAAVAGEHTC-----ETLRHTVCGYDGSEQDTNPAAMLTLGTAGGPVIAAWDITEDTLKGPDAHNRIFTD-----SETGAHGEGVERQALRPLLALAAMATASEGEGLPCKYNLTDAESFETAHGEGFLLASAVPPGGGDPRLLADCSSWKR-----LEPPGEAP--SGAAMF-KLMSPTWAVM----DGSIRGVKRIAGLHIVFDTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAA----PPRAXXXXXXXXXXXXXXXXXXXLV-VTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLR 1353
            +G  + C    + N ES   AG++ C     + L     G      D+    +LTLG+A    I   DITE  L  P A    +T      S  G     V + ALR LL L A+A+    E LP        ++  T +         +P G GD     DC++W+R     +   G+    +G  +F +L+  +W  M    + S  GV  +        ++ +GVD V+ +A  LL E V++ELAVTD  +  YG L+N+V T +A+LATYASRKDL+ VL +AA    P R                    LV V++  A   N DG  S   WV   A G G YRVV LVS+ F A  D+A+ A ++VN+ LAA G   + A+  R
Sbjct:  358 YGRTIHCDDYQYLNDESVG-AGKNECYSEAQDRLADLKQGGVDPVADSGTFVVLTLGSAS---IVVLDITEPRLSAPTATTGRYTMNPIDYSNIGTSYSRVNKSALRALLKLVALASLKLPEDLPWCGGGRAYQATSTPY-------VRLPGGSGDVLPALDCATWERFGWGPISSAGDQTPLTGQEVFGELLQASWGNMTKGANSSEEGVSIVGYERTTRMSMLAGVDTVVQIAETLLAERVSAELAVTDTTVALYGALVNVVFTVVALLATYASRKDLLRVLLRAALGQRPLRLVAHALTASICACVVMIPPVLVLVSEQAARNGNSDGSVSQMTWVSGQASGFGTYRVVGLVSLRFAAVYDSAAYALLWVNIVLAAAGTAAMLASMAR 737          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A836CP76_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP76_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.410e-27
Identity = 72/156 (46.15%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  859 DTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGA 1326
            D LRSG+DNV+  AAVLL    A+++ V D  LT  G L NIV T ++++A Y SR ++MHV GKA P                      LVV+++ A GSN DG  ST AW  A ALG G YRVV LVSM+  A  D  +   M++NLALAA+GA
Sbjct:   16 DALRSGIDNVVQTAAVLLAGAAANDMVVMDTTLTTSGALFNIVFTCVSLIAAYTSRSEVMHVFGKAMPKWLARVLTMALSVFVVLTPTLLLVVSELSARGSNVDGTKSTFAWTSAFALGYGKYRVVELVSMASAAVYDGTAYGLMWLNLALAAVGA 171          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A836CKV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.910e-24
Identity = 128/416 (30.77%), Postives = 176/416 (42.31%), Query Frame = 1
Query:  259 DWGACLLCRQDMFRNVESAAVAGEHTCETLRHT--VCGYDGSEQDTNPAAMLTLGTAGGPVIAAWDITEDTLKGPDAHNRIFTD-----SETGAHGEGVERQALRPLLALAAMATASEGEGLP----------------------CKYNLTDAESF-------------------ETAHGEGFLLASAVPPGGGDPRLLA------DCS--SWKRLEPPGEAPSGAAMFKLMSPTWAVMDGSIRGVKRIAGLHIVFDTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAA----PPR-AXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALG 1323
            ++G  L C    F N ES   AG++ C ++ H   +   + S  D +      + T GG  I A +ITE  L G DA    +T      S  G     V   A++ LLALAA+A+ +  E LP                      C ++     S                     +    G + AS  P     PR          C+  S     PP +A  G      +S    V   SI G  R  GL ++     +GVD V+ +A  LL E V++ELAVTD  +  YG L+N+V T +A+LATYASRKDL+ +L +AA    P R A                   L+ ++      NPDG  S   WV   A G G Y VVALVS+ F A  D+A+ A ++ N+ALA  G
Sbjct:  529 EYGRTLYCDWYQFYNKESVG-AGKNECYSVSHNTHIGNLEDSRTDGDLPGKYVVLTLGGANIVALNITEPRLSGSDASTGHYTMDPEDYSNIGPGTSYVRPDAMQALLALAALASMNLPEELPWCGGGRAYAATSTPYVQVPGKYCPHSTARRGSALDGGPSRRSVGCRRFPDQRSSVRSCGSVTASDRPVA---PRFATRIAVSHQCAPRSCSLFPPPAQASWGNMAVSTVSYVEGV---SIVGHDRTTGLSML-----AGVDTVVQIAETLLAERVSAELAVTDMTVALYGALVNVVFTVVALLATYASRKDLLRLLLRAAFRHRPLRLAAHALTASICACAVMIPPVLLLASEQAVRDGNPDGSVSQMTWVSGQASGFGDYWVVALVSLRFAAVYDSAAYALLWFNIALAVAG 932          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A836CGM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.500e-23
Identity = 134/494 (27.13%), Postives = 189/494 (38.26%), Query Frame = 1
Query:  121 TTPDTAHYMYGNPVLMELGGVTRLLTLGAKQGTLYSAQDKQQTVVGDWGACLLCRQDMFRNVESAAVAGEHTCETLRHTVC----GYDGSEQDTNPAAMLTLGTAGGPVIAAWDITEDTLKGPD---AHNRIFTDSETGAHGEGVER-----QALRPLLALAAMATASE--GEGLP-CK----------YNLTDAESFETAHGEGFLLASAVP---PGGGDPRLLADCSSWKRLE-----------PPGEAPSGAAMFKLMSPTWAVMDGSIRGVKRIAGLHIVFDTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLRGPKTGDKAAAGQPATRTRRWPSLAASSHNVW----VREVEGPSR 1473
            T PD+      NP+     G ++    GA       A ++   VV   GAC+ C +DM+ +V++A  AG  TC       C    G +G  +D++       G   GP++A  D +   L+  D     + +  D  TG  G   E      Q  RPLL LA +A AS+     LP C+          Y++    S   A  +       VP      GD  + A C++W   +           P   A +G A +  M   W  +     GV       I   TL SG+DNV+     LL + V +EL+VTD  L   G L+N+VL  IA +ATYA RKDL+H+ GK  PP A                   + V +  A   N DG +S   W  A  L                          MYVNLALA                  ++ A   PA    + P        +W    V++V+ P R
Sbjct:  269 TIPDSVGIAVHNPI-----GTSK----GANATAAQWAAEEYSYVVSFTGACVYCGEDMYGSVDAAESAGHSTCFLTSQYTCVTDSGANGFTEDSD-------GNVSGPMLARADGSSAPLRQLDLLGGASILAWDITTGGAGSTAEDPNRHLQLARPLLKLAVLAGASQLGAAQLPWCQPGARKNPQQVYDILAGNSVYNAMRKSSNADVYVPLLRTADGDVGVYA-CNTWDTQKWGYVHSDDDDAPTRAAAAGTAFWSSMERRWVSLAADGAGVDGYN--DITRKTLESGIDNVVQTTVALLDDSVTAELSVTDWTLAVPGALVNLVLMLIAAIATYAGRKDLIHIFGKVLPPLAAHAASALACAFAIAVPAIVVAVGEEAARDGNADGSESELQWTAAYIL--------------------------MYVNLALACXXXXXXXXXXXXXGLRNERTARAAPAEAEAQQPIAQEYHVGLWLPPLVKQVDEPLR 717          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A836CKP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKP5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.360e-15
Identity = 75/272 (27.57%), Postives = 119/272 (43.75%), Query Frame = 1
Query:  727 WKRLEPPGEAPS--GAAMFKLMSPTWAVMDGSIRGVKRIAGLHIVFDTLRSG------------VDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLRGPKTGDKAAAGQPATRTRRWPSLAASSHNVWVREVEGPSRRFSSALFSL 1500
            W  ++   E P+  GA +   +   W  +  S  G+   +G      T  SG             ++V+ +A   + E +  E+A  D  LT  G L+ +  T +AVLATYA RKD+ H++ KA P                      + + +V A G+NPDG  +  +WV ADA     YR+VA VS +FTA  DA +   ++VNLA++ +  +++    L+            P T   + P LA       + E + P R  S+  F +
Sbjct:   13 WGVVDSSAEVPATTGAELLHQLPVNWVNISDSAVGLGIESGRSTNMGTGFSGYAPPRPTDIHAAAESVLRLATGSIGEQLVLEVAKADETLTWTGSLVVLSTTLVAVLATYAGRKDIQHIVLKATPLCLAKSAVVLASLVAVALPAVMVAIGEVKARGNNPDGTTAAISWVYADAAVDNGYRLVAAVSTTFTAEYDAFAWVLVWVNLAVSLVATVIIAYVVLQLT----------PTTLRSKLPVLA---RRATITESQQPRRSHSTNNFDM 271          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A836CAV9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.590e-13
Identity = 117/486 (24.07%), Postives = 185/486 (38.07%), Query Frame = 1
Query:  175 GGVTRLLTLGAKQGTLYSAQDKQQTVVGDWGACLLCRQDMFRNVESAAVAGEHTCETLRHTVCGYDGSEQDT------------NPAAMLTLGTAGGPVIAAWDITED-------TLKGPDAHNRI----FTDSET-----------GAHGEGV-ERQALRPLLALAAMATASEGEG-LP-CKYNLTDAESFETAHGEGFLLASAVPPGGGDPRLLADCS------SWKRLEPPGE-------APS-----GAAMFKLMSPTWAVMDGSIRGVKR---------IAGLHIVFDTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAA--PPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLRGPKTGDKAAAGQPATRTRRWPSLAASS 1434
            GGV  +  L  + G       +    V  +GA ++C  +M+ N ++                     S++D             +P  +  L   G   ++AW+I+E        T+ G   +  +    F +S+            GA   GV    AL   +    + +AS G+  LP C+   TDA            L       GG    L DC        W  +   G        AP+     G     L+ P+W  ++ S  G            + G  ++   L +GV  V+  A  +L     +EL+  +  LTP G  + +  T +A++A+YA+R++L+    +    P  A                     + +  A  SNPDG DS   WV A A G   Y VVA V+M+F A +D ++   ++VNLALAA G +    + LRG +   +A  GQ   +    P  A SS
Sbjct:  357 GGVGYVFPLADEVG---GGNWRDGAAVRSYGAAMVCGSEMYINQQTVGATRYSCVNAEGGWAASQPPSDEDLAAMVQEEQPPTDDPRWLPQLLVLGAAAVSAWEISEPFLDVDGTTMGGQRRYVMMDPGDFPNSKGREENPVRGGGGGAQDSGVFTNSALATFIKYGVLTSASRGDSALPWCE---TDAAKINRKTFVPDDLRRGYVAAGGKLLALQDCEVLWPLLGWGNVHGAGADAIQRGGAPAATGVRGLLEAGLLRPSWTDLEESPNGNPYNTDTWGNSFVGGGVLLVSALPAGVAAVVTSAEAVLSSFCDAELSNMEMTLTPMGAALVLSQTLVALIASYAARRELVGFFARVLRMPLLAASLLTVAAFLIGIMTPAVLTAIAESAAHDSNPDGSDSQVRWVHAQANGLAQYNVVAAVTMTFQADTDDSASLLVWVNLALAAFGWVWCSWSVLRGSQKTSRAPTGQAPVKEDSEPRRAISS 836          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A836CHJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.380e-13
Identity = 98/365 (26.85%), Postives = 148/365 (40.55%), Query Frame = 1
Query:  358 VCG----YDG---SEQDTNPAAMLTLGTAGGPVIAAWDITEDTLKGPDAHNRIFTDSETGAHGEGVERQALRPLLALAAMATASEGEGLP-CKYNLTDAESFETAHGEGFLLASAVPPGGGDPRLLADCSSWKRLEPPGEAP-------------SGAAMFKLMSPTWAVMDGSIRGVKRIAGLHIVFDT---------LRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLRGPK 1362
            VCG    YDG   S  +   A M  +GTA  PV+  ++ITE     P+    +  D   G  G  V R   + LL L  M+T    E +P C + + D         +G    +   P G    +  DC+   R   P   P             SG  M   ++ +W     S     R+AG    F           +++ ++  +  A++ L + V  EL+  D  LT  G L+ +  T +A++ATYA RKD+  ++ KAAP                        V +V A  +NPDG  +   W  +D     AYR+VA VS +FT   D  +   ++VNL ++     V+    LR  K
Sbjct:  367 VCGLSDQYDGLVSSSYELVKAVM--VGTA--PVVV-FNITEQNQWTPEGLADVQLDY--GESGGPVGRSTAQLLLGLVGMSTL---ETMPWCDFTVGD---------DGHWYINVALPDGTTANMR-DCTRTWRAFTPAWGPLALRSSVKKVLALSGMEMMDRLAVSWTNTSDSAFWKGRLAGYGTGFSANGNFLSPTAVQAAIEVTLRSASIYLRKEVLLELSQADETLTWAGALVLLSTTLVAIIATYAGRKDIERIIRKAAPQWLARSAVALTGFIAIAVPAIMFTVGEVKARANNPDGSSAEITWAYSDTA---AYRIVAAVSSTFTTIYDPVAMVLVWVNLVVSLSAVFVIAVVVLRAKK 708          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A835Z1P0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.970e-13
Identity = 51/126 (40.48%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  967 GGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAAL-GALVVCA 1341
            G +   ++T IA++ATYASRKD  HVL KA P                      L  +++ A  SNP G +ST  W+   A G G Y+VVA+VS S+TA  + A++A M+ N+ALA + GAL+V A
Sbjct:  690 GAIYAFIVTIIAIIATYASRKDTAHVLSKALPSAVAVALTAMVNIFAVVTPALLLAWSELDARSSNPSGNESTVTWLDVPAGGYGKYKVVAIVSTSYTAAYNTAAQALMWCNVALACVCGALMVFA 815          
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Match: A0A835YSB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.990e-10
Identity = 62/228 (27.19%), Postives = 96/228 (42.11%), Query Frame = 1
Query:  685 PGGGDPRLLADCS-SWKRLEPPGEAPSGAAMFKLMSPTWAVMDGSIRGVKRI--AGLHIVFDTLRSGVDNVIAMAAVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLGKAAPPRAXXXXXXXXXXXXXXXXXXXLVVTQVGAAGSNPDGGDSTKAWVRADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATLRGP 1359
            PGGG    L DC+ +W +L                   W  + G+ R  +R+  A  HI    + SG+  V   A   L    + +L+  D   T  G ++N+ LT +A+++TY  R+++     K   PR                    L+V ++ A  SNP+G  S   W+  DA   G Y +V + +M F A    A+ A ++ N  LA LG   +C A    P
Sbjct:   16 PGGGGIASLYDCAGAWVQLG------------------WGNVWGAGRRRRRMQQAYNHISAYVIESGISVVATAAVAQLTLATSLQLSAADESATTAGVVLNLSLTVLALMSTYIGRREMQSFFRKGMRPRPAVVMTMVVTIFASATAALMLLVEELSARASNPNGAQSLVRWLHGDA---GGYLIVGVTAMRFEARYSEAAYALVWFNFVLAILGTAAICVAIALSP 222          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349652 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835YSE7_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDF0_9STRA1.430e-3032.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CP76_9STRA4.410e-2746.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKV3_9STRA6.910e-2430.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGM0_9STRA1.500e-2327.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKP5_9STRA4.360e-1527.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAV9_9STRA1.590e-1324.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHJ8_9STRA4.380e-1326.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1P0_9STRA4.970e-1340.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSB7_9STRA1.990e-1027.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:771621..774876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349652|estExt_Genemark1.C_Ctg_460120
Hectar predicted targeting categoryother localisation
TranscriptId349974
TrackFilteredModels1
ProteinId349652
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349652gene_4677Tribonema minus UTEX_B_3156 geneContig_46 771621..774876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349652Trimin1|349652|estExt_Genemark1.C_Ctg_460120Tribonema minus UTEX_B_3156 polypeptideContig_46 772020..774876 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4677_6exon_4677_6Tribonema minus UTEX_B_3156 exonContig_46 771621..772036 -
exon_4677_5exon_4677_5Tribonema minus UTEX_B_3156 exonContig_46 772203..772918 -
exon_4677_4exon_4677_4Tribonema minus UTEX_B_3156 exonContig_46 773366..773469 -
exon_4677_3exon_4677_3Tribonema minus UTEX_B_3156 exonContig_46 773499..774023 -
exon_4677_2exon_4677_2Tribonema minus UTEX_B_3156 exonContig_46 774317..774418 -
exon_4677_1exon_4677_1Tribonema minus UTEX_B_3156 exonContig_46 774766..774876 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4677UTR3_4677Tribonema minus UTEX_B_3156 three_prime_UTRContig_46 771621..772019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4677CDS_4677Tribonema minus UTEX_B_3156 CDSContig_46 774766..774876 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4677 ID=mRNA_4677|Name=jgi.p|Trimin1|349652|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1974bp|location=Sequence derived from alignment at Contig_46:771621..774876- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAACGCGCTACGTCAGCTCTAGCAGCGGGTACATCAGATCGCTGTA
CACGGGCAAGGCGGCGCTTCAGTCTTCGCGTGGTGACAGCAAGGCGATGA
CTGCCTCACGGGTGTCCTGGACCACGCCGGATACTGCTCATTACATGTAC
GGCAACCCGGTGCTCATGGAGCTCGGCGGGGTGACGCGGCTGCTGACCCT
GGGTGCCAAGCAGGGGACGCTGTACTCAGCGCAGGACAAGCAGCAGACCG
TCGTTGGCGACTGGGGCGCATGCCTGCTGTGCCGCCAGGACATGTTCCGG
AACGTCGAGAGTGCCGCCGTCGCGGGCGAGCACACGTGCGAAACGCTTCG
CCATACCGTCTGCGGCTATGACGGCAGCGAGCAGGACACCAATCCCGCGG
CGATGCTCACGCTCGGCACGGCCGGCGGCCCCGTCATCGCGGCGTGGGAC
ATCACCGAGGATACGCTGAAGGGCCCGGATGCTCACAACAGGATTTTCAC
CGACTCGGAGACTGGCGCGCACGGCGAGGGCGTGGAACGCCAGGCGCTGC
GGCCGCTGCTGGCGCTGGCGGCAATGGCGACTGCGTCTGAAGGCGAGGGG
CTGCCGTGCAAGTACAACCTCACGGACGCCGAATCCTTCGAAACCGCGCA
CGGCGAAGGCTTTCTCCTGGCCAGCGCGGTGCCCCCCGGTGGCGGCGACC
CGCGGCTGCTCGCCGACTGCAGCTCGTGGAAGCGCTTGGAGCCGCCTGGG
GAGGCGCCGAGCGGAGCTGCCATGTTCAAATTGATGTCGCCCACATGGGC
GGTCATGGACGGCTCCATTCGCGGCGTCAAGAGAATCGCAGGTTTGCACA
TCGTGTTCGACACGCTGCGCTCCGGCGTCGACAACGTCATCGCGATGGCC
GCCGTGCTGCTGCACGAGGGCGTCGCCTCGGAGCTCGCCGTGACGGACGC
CGTGCTCACGCCGTACGGCGGCCTCATCAACATCGTGCTGACGTTCATCG
CCGTGCTGGCGACGTACGCGAGCCGCAAGGACCTGATGCACGTGCTGGGC
AAGGCGGCGCCGCCGCGCGCCGCGCGCGCCGCCGCCGCCGCGCTGTCCTT
CTTCGCCATCGTCACGCCCGCCGCGCTGCTGGTGGTGACGCAGGTGGGCG
CCGCGGGCTCCAACCCCGACGGCGGCGACAGCACCAAGGCGTGGGTGAGG
GCGGACGCGCTGGGCCAGGGCGCCTATCGCGTGGTGGCGCTCGTCAGCAT
GAGCTTCACGGCGCCGTCCGACGCCGCGTCGGAGGCCTTCATGTACGTGA
ACCTCGCGCTGGCGGCGCTGGGCGCGCTGGTGGTGTGCGCCGCCACGCTG
CGCGGGCCCAAGACGGGGGACAAGGCTGCGGCAGGGCAGCCAGCGACTCG
GACCCGCCGGTGGCCTTCGCTGGCGGCGAGCAGCCACAACGTCTGGGTCA
GGGAGGTGGAGGGACCGTCGCGGCGCTTCAGCAGCGCGCTGTTCTCCCTG
CCGGCCGCCGCGGAGCGTGGCGTGCAAGCGGCGCCGGCCAGTCCATGCGC
CACCAGTGGCGACAAGGTGAGCTGACGGCACGACACGCGCTGTATGTACA
GCAGCAGCACTGCCGTTGCGCAAATGGCGCCCGCCACTGGCATGCCCAAG
GCCAGTGGGTGACAATGGTGGGCTGTTGCTCGTGTCTGTGCAGTACACCG
CCAGCGGTAGAGGACCGGAAGCAACTGACGCCCTGTCTGTCTGTCTTTTG
CTTTAAAAAGAGGCCAAGCTTTATGTGAGTAAGTCTGCGAGCGTGCAACA
ACGCTCAGCACGTGATTGCTGTGCCTGCTGTCATGAATCGACCACCTTTG
TAAATACACATGTATAGCATGGGGCACTGCAGCACGATTGGTGCACGCAA
TGCAACTCCTCCTCCGTTCACGCACTCGTACACCCAGGCGCACAGCAACA
GCAGCAGCCTTTGGAACTTTTGGA
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protein sequence of jgi.p|Trimin1|349652

>Trimin1|349652|estExt_Genemark1.C_Ctg_460120 ID=Trimin1|349652|estExt_Genemark1.C_Ctg_460120|Name=jgi.p|Trimin1|349652|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=525bp
MPTRYVSSSSGYIRSLYTGKAALQSSRGDSKAMTASRVSWTTPDTAHYMY
GNPVLMELGGVTRLLTLGAKQGTLYSAQDKQQTVVGDWGACLLCRQDMFR
NVESAAVAGEHTCETLRHTVCGYDGSEQDTNPAAMLTLGTAGGPVIAAWD
ITEDTLKGPDAHNRIFTDSETGAHGEGVERQALRPLLALAAMATASEGEG
LPCKYNLTDAESFETAHGEGFLLASAVPPGGGDPRLLADCSSWKRLEPPG
EAPSGAAMFKLMSPTWAVMDGSIRGVKRIAGLHIVFDTLRSGVDNVIAMA
AVLLHEGVASELAVTDAVLTPYGGLINIVLTFIAVLATYASRKDLMHVLG
KAAPPRAARAAAAALSFFAIVTPAALLVVTQVGAAGSNPDGGDSTKAWVR
ADALGQGAYRVVALVSMSFTAPSDAASEAFMYVNLALAALGALVVCAATL
RGPKTGDKAAAGQPATRTRRWPSLAASSHNVWVREVEGPSRRFSSALFSL
PAAAERGVQAAPASPCATSGDKVS*
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mRNA from alignment at Contig_46:771621..774876-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4677 ID=mRNA_4677|Name=jgi.p|Trimin1|349652|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3256bp|location=Sequence derived from alignment at Contig_46:771621..774876- (Tribonema minus UTEX_B_3156 )
ATGCCAACGCGCTACGTCAGCTCTAGCAGCGGGTACATCAGATCGCTGTA CACGGGCAAGGCGGCGCTTCAGTCTTCGCGTGGTGACAGCAAGGCGATGA CTGCCTCACGGGTGCGTGCATCGCATGGCAATTGCAGGCTTGTGATGGCA GGTAGCTTGTCTGCACTCGCATGTCGCGGCTTCTGTGCTGCAGGGCGGCT GTGATGCTGCAGAAAGTTGACAGCACATACTGTAAGGTTGTCAAGCCCAT GCGTTGGCTTTGTGCCTGCTCTTATCTGTACGAGCATTGCTGCAGTCAGG CACAGCTTTGCAACAGCGCATGTTTCCCCTAAAACATTCTAGACGAGACT CTGGGCAGCACACCAAGCGCGCTGCGAGACGAGACCGTGTATCACTTTCC ATTGTGTGTCTCGCAAACTGCATGCACACAATCACAACTTAAAACTTCTG CCTTGCAGGTGTCCTGGACCACGCCGGATACTGCTCATTACATGTACGGC AACCCGGTGCTCATGGAGCTCGGCGGGGTGACGCGGCTGCTGACCCTGGG TGCCAAGCAGGTGAACTTCATGTTGACTTCAATCTCCTGCGCATGGGCAA GTACAGGGTCGTGGACGAGCAAACCGGCAAGGCAGCATGCGCAACAATAA TCAGTTTTAAGAGCAGGTTCATGGACGGCCATGGCTGGGGCCAGTCCGAC GCGTGCACGCCCACGCGCACGTACATCTTCTCCTCGTACATGACGGAGGC GCTGCTGGAGTGGCCGTACCTCAGGTCGGAGCCATATGAAGATGCCGGCC AGTAAACCGCTTATCCCTACATTTTCAAATTGCACACCGCAGCGTCCGCG CAGGGGACGCTGTACTCAGCGCAGGACAAGCAGCAGACCGTCGTTGGCGA CTGGGGCGCATGCCTGCTGTGCCGCCAGGACATGTTCCGGAACGTCGAGA GTGCCGCCGTCGCGGGCGAGCACACGTGCGAAACGCTTCGCCATACCGTC TGCGGCTATGACGGCAGCGAGCAGGACACCAATCCCGCGGCGATGCTCAC GCTCGGCACGGCCGGCGGCCCCGTCATCGCGGCGTGGGACATCACCGAGG ATACGCTGAAGGGCCCGGATGCTCACAACAGGATTTTCACCGACTCGGAG ACTGGCGCGCACGGCGAGGGCGTGGAACGCCAGGCGCTGCGGCCGCTGCT GGCGCTGGCGGCAATGGCGACTGCGTCTGAAGGCGAGGGGCTGCCGTGCA AGTACAACCTCACGGACGCCGAATCCTTCGAAACCGCGCACGGCGAAGGC TTTCTCCTGGCCAGCGCGGTGCCCCCCGGTGGCGGCGACCCGCGGCTGCT CGCCGACTGCAGCTCGTGGAAGCGCTTGGTATTGGAAGCGTGTGGCCCGA GGGGCAGGAGCCGCCTGGGGAGGCGCCGAGCGGAGCTGCCATGTTCAAAT TGATGTCGCCCACATGGGCGGTCATGGACGGCTCCATTCGCGGCGTCAAG AGAATCGCAGGGTACGGTGACAATTTTTTTTTTATTTTCATAAATTTGTT CTTGCAAAGATAATTGTTTTTTTAAGGATTTAATCTCCATCTCGTTCAAA ATGAATCAATTTAACAACTCGAAGATAATATAAAATCCCAATCGCACTTG TTAGTAGTCCAACAATTGTACCTAAGTATAAGCTTGGTTCACACACAAAG AATTATGTCTTTTTCTTGTTGGGGTTCTTATAATATATCTTGGATTTCTT TTTTTGCAAAATCTATTTTTAATGAGAGCTACATATTTGATTTTTCTTGG GAATTATTTTTGGTTTTACCTTGGAATCCAAAAAATTAATAACAATTATC TAGTCTTATAAAGTAAAGAATAAAGATTTAATCCAAAAACGATCAACCAT GATGTGTTTATTAATCGTTTTCTTTGAAGGTAGTACAATGTTTATACAAA TTTTTAAGTTTGCACATCGTGTTCGACACGCTGCGCTCCGGCGTCGACAA CGTCATCGCGATGGCCGCCGTGCTGCTGCACGAGGGCGTCGCCTCGGAGC TCGCCGTGACGGACGCCGTGCTCACGCCGTACGGCGGCCTCATCAACATC GTGCTGACGTTCATCGCCGTGCTGGCGACGTACGCGAGCCGCAAGGACCT GATGCACGTGCTGGGCAAGGCGGCGCCGCCGCGCGCCGCGCGCGCCGCCG CCGCCGCGCTGTCCTTCTTCGCCATCGTCACGCCCGCCGCGCTGCTGGTG GTGACGCAGGTGGGCGCCGCGGGCTCCAACCCCGACGGCGGCGACAGCAC CAAGGCGTGGGTGAGGGCGGACGCGCTGGGCCAGGGCGCCTATCGCGTGG TGGCGCTCGTCAGCATGAGCTTCACGGCGCCGTCCGACGCCGCGTCGGAG GCCTTCATGTACGTGAACCTCGCGCTGGCGGCGCTGGGCGCGCTGGTGGT GTGCGCCGCCACGCTGCGCGGGCCCAAGACGGGGGACAAGGCTGCGGCAG GGCAGCCAGCGACTCGGACCCGCCGGTGGCCTTCGCTGGCGGCGAGCAGC CACAACGTCTGGGTCAGGGAGGTGGAGGGACCGTCGCGGCGCTTCAGCAG CGCGCTGTTCTCCCTGCCGGCCGCCGCGGAGCGTGGCGTGCAAGCGGCGC CGGCCAGTCCATGCGCCACCAGTGGTGCCGCCCTACAGCGAGCGGCATTG TGTTGACTTGCATACTTCTATGTTTACTTGTACAAATCTCACAGCTGCGC AGCTCGACGCTGGTGCGTGGTGGCGGTCGAGCGTCTGCTGCGGAAGCTGA CATCAGCCGAGCAGATGCAAGCGCGGCTTGCGCGCATTAGGCGACAAGGT GAGCTGACGGCACGACACGCGCTGTATGTACAGCAGCAGCACTGCCGTTG CGCAAATGGCGCCCGCCACTGGCATGCCCAAGGCCAGTGGGTGACAATGG TGGGCTGTTGCTCGTGTCTGTGCAGTACACCGCCAGCGGTAGAGGACCGG AAGCAACTGACGCCCTGTCTGTCTGTCTTTTGCTTTAAAAAGAGGCCAAG CTTTATGTGAGTAAGTCTGCGAGCGTGCAACAACGCTCAGCACGTGATTG CTGTGCCTGCTGTCATGAATCGACCACCTTTGTAAATACACATGTATAGC ATGGGGCACTGCAGCACGATTGGTGCACGCAATGCAACTCCTCCTCCGTT CACGCACTCGTACACCCAGGCGCACAGCAACAGCAGCAGCCTTTGGAACT TTTGGA
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Coding sequence (CDS) from alignment at Contig_46:771621..774876-

>mRNA_4677 ID=mRNA_4677|Name=jgi.p|Trimin1|349652|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1575bp|location=Sequence derived from alignment at Contig_46:771621..774876- (Tribonema minus UTEX_B_3156 )
ATGCCAACGCGCTACGTCAGCTCTAGCAGCGGGTACATCAGATCGCTGTA
CACGGGCAAGGCGGCGCTTCAGTCTTCGCGTGGTGACAGCAAGGCGATGA
CTGCCTCACGGGTGTCCTGGACCACGCCGGATACTGCTCATTACATGTAC
GGCAACCCGGTGCTCATGGAGCTCGGCGGGGTGACGCGGCTGCTGACCCT
GGGTGCCAAGCAGGGGACGCTGTACTCAGCGCAGGACAAGCAGCAGACCG
TCGTTGGCGACTGGGGCGCATGCCTGCTGTGCCGCCAGGACATGTTCCGG
AACGTCGAGAGTGCCGCCGTCGCGGGCGAGCACACGTGCGAAACGCTTCG
CCATACCGTCTGCGGCTATGACGGCAGCGAGCAGGACACCAATCCCGCGG
CGATGCTCACGCTCGGCACGGCCGGCGGCCCCGTCATCGCGGCGTGGGAC
ATCACCGAGGATACGCTGAAGGGCCCGGATGCTCACAACAGGATTTTCAC
CGACTCGGAGACTGGCGCGCACGGCGAGGGCGTGGAACGCCAGGCGCTGC
GGCCGCTGCTGGCGCTGGCGGCAATGGCGACTGCGTCTGAAGGCGAGGGG
CTGCCGTGCAAGTACAACCTCACGGACGCCGAATCCTTCGAAACCGCGCA
CGGCGAAGGCTTTCTCCTGGCCAGCGCGGTGCCCCCCGGTGGCGGCGACC
CGCGGCTGCTCGCCGACTGCAGCTCGTGGAAGCGCTTGGAGCCGCCTGGG
GAGGCGCCGAGCGGAGCTGCCATGTTCAAATTGATGTCGCCCACATGGGC
GGTCATGGACGGCTCCATTCGCGGCGTCAAGAGAATCGCAGGTTTGCACA
TCGTGTTCGACACGCTGCGCTCCGGCGTCGACAACGTCATCGCGATGGCC
GCCGTGCTGCTGCACGAGGGCGTCGCCTCGGAGCTCGCCGTGACGGACGC
CGTGCTCACGCCGTACGGCGGCCTCATCAACATCGTGCTGACGTTCATCG
CCGTGCTGGCGACGTACGCGAGCCGCAAGGACCTGATGCACGTGCTGGGC
AAGGCGGCGCCGCCGCGCGCCGCGCGCGCCGCCGCCGCCGCGCTGTCCTT
CTTCGCCATCGTCACGCCCGCCGCGCTGCTGGTGGTGACGCAGGTGGGCG
CCGCGGGCTCCAACCCCGACGGCGGCGACAGCACCAAGGCGTGGGTGAGG
GCGGACGCGCTGGGCCAGGGCGCCTATCGCGTGGTGGCGCTCGTCAGCAT
GAGCTTCACGGCGCCGTCCGACGCCGCGTCGGAGGCCTTCATGTACGTGA
ACCTCGCGCTGGCGGCGCTGGGCGCGCTGGTGGTGTGCGCCGCCACGCTG
CGCGGGCCCAAGACGGGGGACAAGGCTGCGGCAGGGCAGCCAGCGACTCG
GACCCGCCGGTGGCCTTCGCTGGCGGCGAGCAGCCACAACGTCTGGGTCA
GGGAGGTGGAGGGACCGTCGCGGCGCTTCAGCAGCGCGCTGTTCTCCCTG
CCGGCCGCCGCGGAGCGTGGCGTGCAAGCGGCGCCGGCCAGTCCATGCGC
CACCAGTGGCGACAAGGTGAGCTGA
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