Trimin1|349646|estExt_Genemark1.C_Ctg_460114 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349646
Unique NameTrimin1|349646|estExt_Genemark1.C_Ctg_460114
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length811
Homology
BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: A0A835YRZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ5_9STRA)

HSP 1 Score: 792 bits (2046), Expect = 2.720e-276
Identity = 810/810 (100.00%), Postives = 810/810 (100.00%), Query Frame = 0
Query:    1 MSGGGSTLATMPLLRHAAAAVDRGRRRVLEAAGLEDMIPDLNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDAVGGLGELVELLRGEKVALTAQVEAAAAARAEREACSAGAQAAELEAMRAELDAARQAAAAAQRQRAGMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRQAADAAATLAAQRRVLSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSYPCGTPPLSPPPPLGGAVLPSXXXXXXXXXXXXXXXXXXXSXXXXXXXXXSGQAASSPHFAEARDGAPAGGNSALEDADSIMVCDLHSGTPSLLALRSTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAALLSPEDLGEACEGARSGDGGSGSXXXXXXXGDVGSCTTAQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASWAHLGGAASWKQVLDRMASAVQEGAKGGEAGXXXXXXXXXAFAGRAAAAMSAGWLFRQRRSEPSGEGHEAAAAPTCGMEVGMEAGGTGLGAPVLFGQQRSAAKAALTAMTMDEVQLL 810
            MSGGGSTLATMPLLRHAAAAVDRGRRRVLEAAGLEDMIPDLNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDAVGGLGELVELLRGEKVALTAQVEAAAAARAEREACSAGAQAAELEAMRAELDAARQAAAAAQRQRAGMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRQAADAAATLAAQRRVLSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSYPCGTPPLSPPPPLGGAVLPSXXXXXXXXXXXXXXXXXXXSXXXXXXXXXSGQAASSPHFAEARDGAPAGGNSALEDADSIMVCDLHSGTPSLLALRSTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAALLSPEDLGEACEGARSGDGGSGSXXXXXXXGDVGSCTTAQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASWAHLGGAASWKQVLDRMASAVQEGAKGGEAGXXXXXXXXXAFAGRAAAAMSAGWLFRQRRSEPSGEGHEAAAAPTCGMEVGMEAGGTGLGAPVLFGQQRSAAKAALTAMTMDEVQLL
Sbjct:    1 MSGGGSTLATMPLLRHAAAAVDRGRRRVLEAAGLEDMIPDLNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDAVGGLGELVELLRGEKVALTAQVEAAAAARAEREACSAGAQAAELEAMRAELDAARQAAAAAQRQRAGMAQXXXXXXXXXXXXXXXXXXXXXXXXXXXAERRQAADAAATLAAQRRVLSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSYPCGTPPLSPPPPLGGAVLPSXXXXXXXXXXXXXXXXXXXSXXXXXXXXXSGQAASSPHFAEARDGAPAGGNSALEDADSIMVCDLHSGTPSLLALRSTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAALLSPEDLGEACEGARSGDGGSGSXXXXXXXGDVGSCTTAQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASWAHLGGAASWKQVLDRMASAVQEGAKGGEAGXXXXXXXXXAFAGRAAAAMSAGWLFRQRRSEPSGEGHEAAAAPTCGMEVGMEAGGTGLGAPVLFGQQRSAAKAALTAMTMDEVQLL 810          
BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: D8LCD8_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD8_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.600e-15
Identity = 58/149 (38.93%), Postives = 79/149 (53.02%), Query Frame = 0
Query:   22 DRGRRRVLEAAGLEDMIPDLNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAA---PHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAAL 167
            +R + +V EA GL ++  D N  +++K+SP KTAAAL+  A R G   K+N    W  R  ++VPH FLYYFGE        PHG+IDLE YT  +V++GN+L++             P     P    R  YL L    EA  WA A+
Sbjct:   16 ERLKHKVYEATGLGEVFNDSNVHLSVKSSPEKTAAALSLLAEREGLITKQNDSGSWRRRRALLVPHTFLYYFGEHTAETDLRPHGVIDLELYTDIQVVDGNLLKLA------------PGDETSPI---RTFYLRLKDGDEAEEWAQAI 149          
BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: F0YMI3_AURAN (PH domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMI3_AURAN)

HSP 1 Score: 78.6 bits (192), Expect = 1.670e-11
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 0
Query:   42 NTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDA 183
            NTT+TIK+SPPKTAA      +R+G   KRN+Q  W  R C +VP   LYY+  +   +  GIIDLE YT  EV+  N +R+                   P +  R  +     + +  AWAAAL  +  R   VA  RDA
Sbjct:   15 NTTLTIKSSPPKTAAVATRLGVRTGVLTKRNEQQVWQRRYCALVPQTLLYYYDGEHSESARGIIDLEYYTEVEVVARNTIRL----------------STPPDIPLRSFFFKADDEDQCAAWAAALTRE--RYFVVADERDA 138          
BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: A0A7S3K628_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K628_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.500e-11
Identity = 52/142 (36.62%), Postives = 68/142 (47.89%), Query Frame = 0
Query:   42 NTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPXXXAEPALRPRDIYLCLASDAEARAWAAALAPDALRLRAVAAARDA 183
            NT +TIK+SPPKTAA      +R G   KRN+  +W  R C +VP   LYYF  +      GIIDLE YT  E++  N +R+                   P +  R  +    +D +  AWAAAL  +  R   VA  RDA
Sbjct:   19 NTALTIKSSPPKTAAVARRLGVRVGTLTKRNESNQWQRRYCALVPQTLLYYFDSESSEFARGIIDLEYYTDVEIVAKNTIRL----------------STPPDIPLRSFFFRADNDEQCAAWAAALTRE--RYFVVAEERDA 142          
BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.080e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 0
Query:   44 TITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYT 111
            TIT+K+SPP+TAA +   ++R G   K+NKQ  W  R C +VPH FLYYF   D   P G+IDL+ YT
Sbjct:   86 TITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEVPRGVIDLDPYT 153          
BLAST of jgi.p|Trimin1|349646 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.240e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 0
Query:   44 TITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYT 111
            TIT+K+SPP+TAA +   ++R G   K+NKQ  W  R C +VPH FLYYF   D   P G+IDL+ YT
Sbjct:   91 TITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEVPRGVIDLDPYT 158          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349646 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YRZ5_9STRA2.720e-276100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LCD8_ECTSI1.600e-1538.93N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
F0YMI3_AURAN1.670e-1137.32PH domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A7S3K628_9STRA3.500e-1136.62Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
D8LCP7_ECTSI1.080e-1051.47PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JHM0_9PHAE1.240e-1051.47PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 199..219
NoneNo IPR availableCOILSCoilCoilcoord: 275..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 607..636
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..431
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..470
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 432..453
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 588..697
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 63..167
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 53..170
e-value: 3.2E-5
score: 25.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:726595..733076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349646mRNA_4671Tribonema minus UTEX_B_3156 mRNAContig_46 726595..733552 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349646|estExt_Genemark1.C_Ctg_460114 ID=Trimin1|349646|estExt_Genemark1.C_Ctg_460114|Name=jgi.p|Trimin1|349646|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=811bp
MSGGGSTLATMPLLRHAAAAVDRGRRRVLEAAGLEDMIPDLNTTITIKAS
PPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAA
PHGIIDLEAYTRSEVLEGNVLRVYADAADSAAAAADPAAAAEPALRPRDI
YLCLASDAEARAWAAALAPDALRLRAVAAARDAAAARCAGAQAAAAAAAE
AALREVRGARAQRDAAAAEAAARAAAAARAAAHARGDAVGGLGELVELLR
GEKVALTAQVEAAAAARAEREACSAGAQAAELEAMRAELDAARQAAAAAQ
RQRAGMAQELQALRAALDDACADAAEARANMAAVAAERRQAADAAATLAA
QRRVLSRELRAARVDAAAAAASHARLAEAYSALEARAAAAAAAHGSYPCG
TPPLSPPPPLGGAVLPSPQGAASPPPPLLTASPLLRSTSQSPLPRSSGQA
ASSPHFAEARDGAPAGGNSALEDADSIMVCDLHSGTPSLLALRSTAAASA
PPSPALSAGSAAALSDDTAAATAAAPLQQWLAARQRQAALPPSWGPDSDD
ENGIVTATEVLAALRETLESAAAAATAAVEASSSRGAALLSPEDLGEACE
GARSGDGGSGSGSTGSRSGDVGSCTTAQSSSALASAAAAERTPRSTAAEG
AAAPPPPPGTSARDAAAGSDSSSSAQQAPPPLPEPPQQQAGASWAHLGGA
ASWKQVLDRMASAVQEGAKGGEAGGAAAAAGGSAFAGRAAAAMSAGWLFR
QRRSEPSGEGHEAAAAPTCGMEVGMEAGGTGLGAPVLFGQQRSAAKAALT
AMTMDEVQLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf