Trimin1|349638|estExt_Genemark1.C_Ctg_460104 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349638
Unique NameTrimin1|349638|estExt_Genemark1.C_Ctg_460104
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length306
Homology
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BLAST of jgi.p|Trimin1|349638 vs. uniprot
Match: A0A835Z000_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z000_9STRA)

HSP 1 Score: 556 bits (1434), Expect = 1.840e-199
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0 
Query:    1 MAQAVNMDDRGEVQVFIYGNEVQHMQVLLRPGGALIAAHDALVSCGKHATCVPLPRQGQTLFDALAAALQLRSVRTHAKWVNASAETTTLGISTPSPGNLVQIELADTGPLCMHPQALICATRDVHLAPQTRFSRRNHHPCAHMMLVKAHAASGAXXXXXXXXXXXXXXXXGSGTAYLAAGGVAVKKPLRAGEALLVMEACLLGVAETCAVSVPRRSAALGGGGRQNRLGYRMIEVTGPGTVFLQSDAGVAAGRRDPGGGAKGELEARIALGMTLGACLMYGAFNIIFIAMEFAGLLDEEPRNAA 305
            MAQAVNMDDRGEVQVFIYGNEVQHMQVLLRPGGALIAAHDALVSCGKHATCVPLPRQGQTLFDALAAALQLRSVRTHAKWVNASAETTTLGISTPSPGNLVQIELADTGPLCMHPQALICATRDVHLAPQTRFSRRNHHPCAHMMLVKAHAASGAXXXXXXXXXXXXXXXXGSGTAYLAAGGVAVKKPLRAGEALLVMEACLLGVAETCAVSVPRRSAALGGGGRQNRLGYRMIEVTGPGTVFLQSDAGVAAGRRDPGGGAKGELEARIALGMTLGACLMYGAFNIIFIAMEFAGLLDEEPRNAA
Sbjct:    1 MAQAVNMDDRGEVQVFIYGNEVQHMQVLLRPGGALIAAHDALVSCGKHATCVPLPRQGQTLFDALAAALQLRSVRTHAKWVNASAETTTLGISTPSPGNLVQIELADTGPLCMHPQALICATRDVHLAPQTRFSRRNHHPCAHMMLVKAHAASGAXXXXXXXXXXXXXXXXGSGTAYLAAGGVAVKKPLRAGEALLVMEACLLGVAETCAVSVPRRSAALGGGGRQNRLGYRMIEVTGPGTVFLQSDAGVAAGRRDPGGGAKGELEARIALGMTLGACLMYGAFNIIFIAMEFAGLLDEEPRNAA 305
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349638 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z000_9STRA1.840e-199100.00Altered inheritance of mitochondria protein 24, mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036983Mitochondrial biogenesis AIM24 superfamilyGENE3D3.60.160.10Mitochondrial biogenesis AIM24coord: 9..254
e-value: 2.0E-18
score: 68.4
IPR002838Mitochondrial biogenesis protein AIM24PFAMPF01987AIM24coord: 17..246
e-value: 4.2E-20
score: 72.4
NoneNo IPR availablePANTHERPTHR43657TRYPTOPHAN RNA-BINDING ATTENUATOR PROTEIN-LIKE PROTEINcoord: 10..246
IPR016031Tryptophan RNA-binding attenuator protein-like domain superfamilySUPERFAMILY51219TRAP-likecoord: 16..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:670901..672805 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349638mRNA_4660Tribonema minus UTEX_B_3156 mRNAContig_46 670901..672805 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349638|estExt_Genemark1.C_Ctg_460104 ID=Trimin1|349638|estExt_Genemark1.C_Ctg_460104|Name=jgi.p|Trimin1|349638|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=306bp
MAQAVNMDDRGEVQVFIYGNEVQHMQVLLRPGGALIAAHDALVSCGKHAT
CVPLPRQGQTLFDALAAALQLRSVRTHAKWVNASAETTTLGISTPSPGNL
VQIELADTGPLCMHPQALICATRDVHLAPQTRFSRRNHHPCAHMMLVKAH
AASGANGAGNVGSSGGGSGGRGSGTAYLAAGGVAVKKPLRAGEALLVMEA
CLLGVAETCAVSVPRRSAALGGGGRQNRLGYRMIEVTGPGTVFLQSDAGV
AAGRRDPGGGAKGELEARIALGMTLGACLMYGAFNIIFIAMEFAGLLDEE
PRNAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036983AIM24_sf
IPR002838AIM24
IPR016031Trp_RNA-bd_attenuator-like_dom