mRNA_4660 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349638
Unique Name	mRNA_4660
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349638 vs. uniprot
Match: A0A835Z000_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z000_9STRA)

HSP 1 Score: 556 bits (1434), Expect = 1.840e-199
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 1

Query:    1 MAQAVNMDDRGEVQVFIYGNEVQHMQVLLRPGGALIAAHDALVSCGKHATCVPLPRQGQTLFDALAAALQLRSVRTHAKWVNASAETTTLGISTPSPGNLVQIELADTGPLCMHPQALICATRDVHLAPQTRFSRRNHHPCAHMMLVKAHAASGAXXXXXXXXXXXXXXXXGSGTAYLAAGGVAVKKPLRAGEALLVMEACLLGVAETCAVSVPRRSAALGGGGRQNRLGYRMIEVTGPGTVFLQSDAGVAAGRRDPGGGAKGELEARIALGMTLGACLMYGAFNIIFIAMEFAGLLDEEPRNAA 915
            MAQAVNMDDRGEVQVFIYGNEVQHMQVLLRPGGALIAAHDALVSCGKHATCVPLPRQGQTLFDALAAALQLRSVRTHAKWVNASAETTTLGISTPSPGNLVQIELADTGPLCMHPQALICATRDVHLAPQTRFSRRNHHPCAHMMLVKAHAASGAXXXXXXXXXXXXXXXXGSGTAYLAAGGVAVKKPLRAGEALLVMEACLLGVAETCAVSVPRRSAALGGGGRQNRLGYRMIEVTGPGTVFLQSDAGVAAGRRDPGGGAKGELEARIALGMTLGACLMYGAFNIIFIAMEFAGLLDEEPRNAA
Sbjct:    1 MAQAVNMDDRGEVQVFIYGNEVQHMQVLLRPGGALIAAHDALVSCGKHATCVPLPRQGQTLFDALAAALQLRSVRTHAKWVNASAETTTLGISTPSPGNLVQIELADTGPLCMHPQALICATRDVHLAPQTRFSRRNHHPCAHMMLVKAHAASGAXXXXXXXXXXXXXXXXGSGTAYLAAGGVAVKKPLRAGEALLVMEACLLGVAETCAVSVPRRSAALGGGGRQNRLGYRMIEVTGPGTVFLQSDAGVAAGRRDPGGGAKGELEARIALGMTLGACLMYGAFNIIFIAMEFAGLLDEEPRNAA 305

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349638 vs. uniprot

BLAST of jgi.p|Trimin1|349638 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z000_9STRA	1.840e-199	100.00	Altered inheritance of mitochondria protein 24, mi...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_46	contig	Contig_46:670901..672805 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349638\|estExt_Genemark1.C_Ctg_460104
Description	Mitochondrial biogenesis AIM24
COG category	S
Max annot lvl	35493\|Streptophyta
EggNOG OGs	COG2013@1\|root,2QVFQ@2759\|Eukaryota,37M7G@33090\|Viridiplantae,3GGP2@35493\|Streptophyta,3KMWR@4447\|Liliopsida
Evalue	3e-06
Seed ortholog	4641.GSMUA_Achr8P26740_001
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Tryptophan RNA-binding attenuator protein-like domain
Ec32 ortholog	Ec-07_005040.1
TranscriptId	349960
Track	FilteredModels1
ProteinId	349638

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349638	gene_4660	Tribonema minus UTEX_B_3156	gene	Contig_46 670901..672805 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4660_1	exon_4660_1	Tribonema minus UTEX_B_3156	exon	Contig_46 670901..671225 +
exon_4660_2	exon_4660_2	Tribonema minus UTEX_B_3156	exon	Contig_46 671734..672068 +
exon_4660_3	exon_4660_3	Tribonema minus UTEX_B_3156	exon	Contig_46 672548..672805 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4660	CDS_4660	Tribonema minus UTEX_B_3156	CDS	Contig_46 670901..671225 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349638	Trimin1\|349638\|estExt_Genemark1.C_Ctg_460104	Tribonema minus UTEX_B_3156	polypeptide	Contig_46 670901..672805 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_46:670901..672805+
coding sequence from alignment at Contig_46:670901..672805+

spliced messenger RNA

>mRNA_4660 ID=mRNA_4660|Name=jgi.p|Trimin1|349638|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=918bp|location=Sequence derived from alignment at Contig_46:670901..672805+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGGCGGTGAACATGGACGACCGAGGTGAGGTCCAAGTCTTCAT
CTATGGCAACGAGGTACAGCACATGCAGGTCCTGCTGCGGCCGGGAGGAG
CGCTCATTGCGGCGCATGACGCCCTAGTGTCCTGCGGCAAGCACGCGACG
TGCGTGCCGCTGCCGCGCCAGGGCCAGACGCTGTTCGACGCGCTCGCGGC
GGCGCTGCAGCTGCGCAGCGTCCGCACGCACGCCAAATGGGTGAACGCCA
GCGCCGAGACCACCACGCTCGGCATCTCGACGCCGTCCCCGGGCAATCTG
GTCCAGATCGAGCTCGCCGATACAGGCCCCCTCTGCATGCACCCGCAGGC
GCTGATCTGCGCGACGCGCGACGTCCACCTAGCCCCCCAGACTCGCTTCA
GCCGCCGCAACCACCACCCCTGCGCACACATGATGCTCGTCAAGGCGCAC
GCCGCCAGCGGTGCCAACGGCGCAGGCAACGTCGGCAGCAGCGGCGGCGG
CAGCGGCGGCCGCGGCTCTGGAACGGCGTACCTTGCGGCGGGGGGGGTGG
CGGTGAAGAAGCCACTGCGTGCGGGCGAGGCGCTGCTGGTGATGGAGGCG
TGCCTGCTCGGCGTTGCAGAGACGTGCGCGGTCAGCGTTCCGCGCCGGTC
GGCTGCGCTGGGCGGCGGCGGCCGCCAGAACCGCCTCGGGTACAGGATGA
TCGAGGTGACGGGCCCGGGGACGGTCTTCCTGCAGAGCGACGCCGGCGTG
GCGGCGGGGCGGCGCGACCCGGGGGGCGGGGCGAAGGGGGAGCTGGAGGC
GCGCATCGCGCTGGGCATGACGCTGGGCGCGTGCCTCATGTACGGCGCGT
TCAACATCATCTTCATTGCGATGGAGTTTGCGGGGCTGCTGGACGAGGAG
CCGCGCAACGCCGCGTGA

protein sequence of jgi.p|Trimin1|349638

>Trimin1|349638|estExt_Genemark1.C_Ctg_460104 ID=Trimin1|349638|estExt_Genemark1.C_Ctg_460104|Name=jgi.p|Trimin1|349638|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=306bp
MAQAVNMDDRGEVQVFIYGNEVQHMQVLLRPGGALIAAHDALVSCGKHAT
CVPLPRQGQTLFDALAAALQLRSVRTHAKWVNASAETTTLGISTPSPGNL
VQIELADTGPLCMHPQALICATRDVHLAPQTRFSRRNHHPCAHMMLVKAH
AASGANGAGNVGSSGGGSGGRGSGTAYLAAGGVAVKKPLRAGEALLVMEA
CLLGVAETCAVSVPRRSAALGGGGRQNRLGYRMIEVTGPGTVFLQSDAGV
AAGRRDPGGGAKGELEARIALGMTLGACLMYGAFNIIFIAMEFAGLLDEE
PRNAA*

mRNA from alignment at Contig_46:670901..672805+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4660 ID=mRNA_4660|Name=jgi.p|Trimin1|349638|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1905bp|location=Sequence derived from alignment at Contig_46:670901..672805+ (Tribonema minus UTEX_B_3156 )
ATGGCGCAGGCGGTGAACATGGACGACCGAGGTGAGGTCCAAGTCTTCAT
CTATGGCAACGAGGTACAGCACATGCAGGTCCTGCTGCGGCCGGGAGGAG
CGCTCATTGCGGCGCATGACGCCCTAGTGTCCTGCGGCAAGCACGCGACG
TGCGTGCCGCTGCCGCGCCAGGGCCAGACGCTGTTCGACGCGCTCGCGGC
GGCGCTGCAGCTGCGCAGCGTCCGCACGCACGCCAAATGGGTGAACGCCA
GCGCCGAGACCACCACGCTCGGCATCTCGACGCCGTCCCCGGGCAATCTG
GTCCAGATCGAGCTCGCCGATACAGGTGAGCACACGAATGATGAAACATA
TGACATCACTAGGGGCGTAAGTTGGTGAACGCGCAGCAGCCTTGAGATTG
CAGTGCTCTCGCGGGCGCTTCATTGCTGCGGCTATTGCTACGGGATCTGC
TCCAGGCCGGTGGATTCAGGCGGTCTGGATTGTCTCCTCTGCTGCCTTTA
AGCTCAGCCATTGACCCCATACTTCGCCAGCACCATTACGGCAGCTGAGA
GCAAGCGAGTGCAGCGCTTGGTCACACTGATGAAGGCCCGTCTTTCACTT
TGACACCTTTTGCTCGGTTTCTCACACAATTTCTATCGTTCACACAGTGC
TGCGTGCCTTGTTCTTGGCTGTGCATGACGTGCCAGCCCAATGAATGCGC
TGCAGCATTGCCCCCGCCTGCGCTGCACCTTTTAATTACACACCCCGCAT
GCTCGAACTCTATGGCATCACGTTATGATGCGCACATACCTACCCCCTCT
GCCCCCCGTCCCCCCCCCGTCCCCCCCCGCCAGGCCCCCTCTGCATGCAC
CCGCAGGCGCTGATCTGCGCGACGCGCGACGTCCACCTAGCCCCCCAGAC
TCGCTTCAGCCGCCGCAACCACCACCCCTGCGCACACATGATGCTCGTCA
AGGCGCACGCCGCCAGCGGTGCCAACGGCGCAGGCAACGTCGGCAGCAGC
GGCGGCGGCAGCGGCGGCCGCGGCTCTGGAACGGCGTACCTTGCGGCGGG
GGGGGTGGCGGTGAAGAAGCCACTGCGTGCGGGCGAGGCGCTGCTGGTGA
TGGAGGCGTGCCTGCTCGGCGTTGCAGAGACGTGCGCGGTCAGCGTTCCG
CGCCGGTCGGCTGCGCTGGTGAGTGGCGGTGGTGGCGCGTTTGGACTGCT
GCGCTGCCTGTGTTGCGTCGTTGGGTGCTGGGCAGGACAAGAAAACATCA
GGCTTGCGGTATGCTGTACCGTGTGCCACCTTCTTTTGATGACTGCTTCC
TTGTTTCACCGCCGTCTGCCCTGCACCCCCTTCAGTCAAGGTTCCCTTGC
AGCCGTTGAGGGCACGACAGGGCCCTGCCGTCGCCGTTTGACGACATTAG
GGCAACGTGACAAGAGACACCGCAACACTGCCTCATCGCTCGCGCGCTGT
CGCGCAACCGCGAGTCCACTCGTGCCTTGCACCGTGCTGCGCAGTCACGC
AGAAGCTATGTCTGGGCGGCGCGCCATCGCTCCCGCATCAACGGCTCAGT
GCCCCGTTAGCGCCGCCGCCCGCGCTACGATCATGCTTCACGCCACTGCA
CAGGGGCCGGTTCTTACTGACCAACTCATCTCTCTCCCTGCGCGCAGGGC
GGCGGCGGCCGCCAGAACCGCCTCGGGTACAGGATGATCGAGGTGACGGG
CCCGGGGACGGTCTTCCTGCAGAGCGACGCCGGCGTGGCGGCGGGGCGGC
GCGACCCGGGGGGCGGGGCGAAGGGGGAGCTGGAGGCGCGCATCGCGCTG
GGCATGACGCTGGGCGCGTGCCTCATGTACGGCGCGTTCAACATCATCTT
CATTGCGATGGAGTTTGCGGGGCTGCTGGACGAGGAGCCGCGCAACGCCG
CGTGA

Coding sequence (CDS) from alignment at Contig_46:670901..672805+

>mRNA_4660 ID=mRNA_4660|Name=jgi.p|Trimin1|349638|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=918bp|location=Sequence derived from alignment at Contig_46:670901..672805+ (Tribonema minus UTEX_B_3156 )
ATGGCGCAGGCGGTGAACATGGACGACCGAGGTGAGGTCCAAGTCTTCAT
CTATGGCAACGAGGTACAGCACATGCAGGTCCTGCTGCGGCCGGGAGGAG
CGCTCATTGCGGCGCATGACGCCCTAGTGTCCTGCGGCAAGCACGCGACG
TGCGTGCCGCTGCCGCGCCAGGGCCAGACGCTGTTCGACGCGCTCGCGGC
GGCGCTGCAGCTGCGCAGCGTCCGCACGCACGCCAAATGGGTGAACGCCA
GCGCCGAGACCACCACGCTCGGCATCTCGACGCCGTCCCCGGGCAATCTG
GTCCAGATCGAGCTCGCCGATACAGGCCCCCTCTGCATGCACCCGCAGGC
GCTGATCTGCGCGACGCGCGACGTCCACCTAGCCCCCCAGACTCGCTTCA
GCCGCCGCAACCACCACCCCTGCGCACACATGATGCTCGTCAAGGCGCAC
GCCGCCAGCGGTGCCAACGGCGCAGGCAACGTCGGCAGCAGCGGCGGCGG
CAGCGGCGGCCGCGGCTCTGGAACGGCGTACCTTGCGGCGGGGGGGGTGG
CGGTGAAGAAGCCACTGCGTGCGGGCGAGGCGCTGCTGGTGATGGAGGCG
TGCCTGCTCGGCGTTGCAGAGACGTGCGCGGTCAGCGTTCCGCGCCGGTC
GGCTGCGCTGGGCGGCGGCGGCCGCCAGAACCGCCTCGGGTACAGGATGA
TCGAGGTGACGGGCCCGGGGACGGTCTTCCTGCAGAGCGACGCCGGCGTG
GCGGCGGGGCGGCGCGACCCGGGGGGCGGGGCGAAGGGGGAGCTGGAGGC
GCGCATCGCGCTGGGCATGACGCTGGGCGCGTGCCTCATGTACGGCGCGT
TCAACATCATCTTCATTGCGATGGAGTTTGCGGGGCTGCTGGACGAGGAG
CCGCGCAACGCCGCGTGA