mRNA_4643 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349631
Unique NamemRNA_4643
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349631 vs. uniprot
Match: A0A835YRM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM4_9STRA)

HSP 1 Score: 336 bits (861), Expect = 1.060e-114
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1 
Query:   28 MSGKDVNALQQLIGGFLGQPPADAAAPAAASAINSGAKAXXXXXXXXXXXXXXXXXXXXXXXXAHRGAESAESHERCLRGRRIGSGTQERELGQGIRKGEQREATAAARQGRRPLLEAWCERWQESTVIQVAAGAWTLRVANEMRPAQRVRDGSRCTILVLICQMREGASGLVSDLCVCSVTCCTFHQQQLRVKVSQSGPP 630
            MSGKDVNALQQLIGGFLGQPPADAAAPAAASAINSGAKAXXXXXXXXXXXXXXXXXXXXXXXXAHRGAESAESHERCLRGRRIGSGTQERELGQGIRKGEQREATAAARQGRRPLLEAWCERWQESTVIQVAAGAWTLRVANEMRPAQRVRDGSRCTILVLICQMREGASGLVSDLCVCSVTCCTFHQQQLRVKVSQSGPP
Sbjct:    1 MSGKDVNALQQLIGGFLGQPPADAAAPAAASAINSGAKAXXXXXXXXXXXXXXXXXXXXXXXXAHRGAESAESHERCLRGRRIGSGTQERELGQGIRKGEQREATAAARQGRRPLLEAWCERWQESTVIQVAAGAWTLRVANEMRPAQRVRDGSRCTILVLICQMREGASGLVSDLCVCSVTCCTFHQQQLRVKVSQSGPP 201
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349631 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YRM4_9STRA1.060e-114100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:571495..572324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349631|estExt_Genemark1.C_Ctg_460090
Hectar predicted targeting categoryother localisation
TranscriptId349953
TrackFilteredModels1
ProteinId349631
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349631gene_4643Tribonema minus UTEX_B_3156 geneContig_46 571495..572324 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4643_2exon_4643_2Tribonema minus UTEX_B_3156 exonContig_46 571495..572004 -
exon_4643_1exon_4643_1Tribonema minus UTEX_B_3156 exonContig_46 572073..572324 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4643UTR3_4643Tribonema minus UTEX_B_3156 three_prime_UTRContig_46 571495..571623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4643CDS_4643Tribonema minus UTEX_B_3156 CDSContig_46 572073..572297 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4643UTR5_4643Tribonema minus UTEX_B_3156 five_prime_UTRContig_46 572298..572324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349631Trimin1|349631|estExt_Genemark1.C_Ctg_460090Tribonema minus UTEX_B_3156 polypeptideContig_46 571624..572297 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4643 ID=mRNA_4643|Name=jgi.p|Trimin1|349631|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=762bp|location=Sequence derived from alignment at Contig_46:571495..572324- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCACGCAGAGCCGTACGACGAGCGAGATGAGTGGCAAGGACGTGAATGC
ACTGCAACAACTGATTGGTGGCTTCCTCGGGCAACCACCTGCCGATGCGG
CTGCTCCCGCCGCTGCTAGCGCTATCAACTCCGGAGCCAAAGCAGGAGAA
GCCTCTGAGGCAGGAGCTGCTGCTACTGCTGCTTCGGGTGCTGCTGCTGG
GGCTTCTCCAGCCTCTGCACATCGAGGTGCTGAATCAGCTGAGAGCCATG
AGAGATGCCTTCGTGGCCGCAGGATTGGAAGCGGGACTCAAGAACGTGAG
CTTGGACAAGGGATCCGGAAAGGCGAGCAGCGCGAGGCGACAGCGGCAGC
AAGACAGGGACGCCGCCCCCTACTCGAGGCTTGGTGTGAACGGTGGCAAG
AAAGTACCGTAATTCAAGTTGCAGCAGGTGCTTGGACATTGCGCGTTGCT
AACGAAATGCGACCAGCACAGCGTGTGCGCGATGGCTCACGATGTACGAT
TTTGGTACTGATATGTCAAATGCGGGAGGGTGCATCAGGACTTGTTTCTG
ATTTGTGTGTCTGCAGTGTCACATGCTGCACTTTTCATCAGCAGCAGCTC
CGAGTGAAGGTGAGTCAGTCTGGCCCTCCTTGAGAGGCGACAGGGGGTCT
GCGAGAGTTCTTCCTACGTGGTGGCGCTTTGGCTGTCATCATCGACATGT
GTACATGGGGACTACATGCGTAAAGGCTGCATACACATGGTGCAAGTTAA
AGGCACTTGAAA
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protein sequence of jgi.p|Trimin1|349631

>Trimin1|349631|estExt_Genemark1.C_Ctg_460090 ID=Trimin1|349631|estExt_Genemark1.C_Ctg_460090|Name=jgi.p|Trimin1|349631|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=202bp
MSGKDVNALQQLIGGFLGQPPADAAAPAAASAINSGAKAGEASEAGAAAT
AASGAAAGASPASAHRGAESAESHERCLRGRRIGSGTQERELGQGIRKGE
QREATAAARQGRRPLLEAWCERWQESTVIQVAAGAWTLRVANEMRPAQRV
RDGSRCTILVLICQMREGASGLVSDLCVCSVTCCTFHQQQLRVKVSQSGP
P*
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mRNA from alignment at Contig_46:571495..572324-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4643 ID=mRNA_4643|Name=jgi.p|Trimin1|349631|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=830bp|location=Sequence derived from alignment at Contig_46:571495..572324- (Tribonema minus UTEX_B_3156 )
GGCACGCAGAGCCGTACGACGAGCGAGATGAGTGGCAAGGACGTGAATGC
ACTGCAACAACTGATTGGTGGCTTCCTCGGGCAACCACCTGCCGATGCGG
CTGCTCCCGCCGCTGCTAGCGCTATCAACTCCGGAGCCAAAGCAGGAGAA
GCCTCTGAGGCAGGAGCTGCTGCTACTGCTGCTTCGGGTGCTGCTGCTGG
GGCTTCTCCAGCCTCTGCACATCGAGGTGCTGAATCAGCTGAGAGCCATG
AGGTCAGCTTTCTAGCTGAGTTGCAGGCGGTCAAAATGGCCATGCTGAGA
ACGAAGTTGCAGGCGAGCAGAGATGCCTTCGTGGCCGCAGGATTGGAAGC
GGGACTCAAGAACGTGAGCTTGGACAAGGGATCCGGAAAGGCGAGCAGCG
CGAGGCGACAGCGGCAGCAAGACAGGGACGCCGCCCCCTACTCGAGGCTT
GGTGTGAACGGTGGCAAGAAAGTACCGTAATTCAAGTTGCAGCAGGTGCT
TGGACATTGCGCGTTGCTAACGAAATGCGACCAGCACAGCGTGTGCGCGA
TGGCTCACGATGTACGATTTTGGTACTGATATGTCAAATGCGGGAGGGTG
CATCAGGACTTGTTTCTGATTTGTGTGTCTGCAGTGTCACATGCTGCACT
TTTCATCAGCAGCAGCTCCGAGTGAAGGTGAGTCAGTCTGGCCCTCCTTG
AGAGGCGACAGGGGGTCTGCGAGAGTTCTTCCTACGTGGTGGCGCTTTGG
CTGTCATCATCGACATGTGTACATGGGGACTACATGCGTAAAGGCTGCAT
ACACATGGTGCAAGTTAAAGGCACTTGAAA
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Coding sequence (CDS) from alignment at Contig_46:571495..572324-

>mRNA_4643 ID=mRNA_4643|Name=jgi.p|Trimin1|349631|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=606bp|location=Sequence derived from alignment at Contig_46:571495..572324- (Tribonema minus UTEX_B_3156 )
ATGAGTGGCAAGGACGTGAATGCACTGCAACAACTGATTGGTGGCTTCCT
CGGGCAACCACCTGCCGATGCGGCTGCTCCCGCCGCTGCTAGCGCTATCA
ACTCCGGAGCCAAAGCAGGAGAAGCCTCTGAGGCAGGAGCTGCTGCTACT
GCTGCTTCGGGTGCTGCTGCTGGGGCTTCTCCAGCCTCTGCACATCGAGG
TGCTGAATCAGCTGAGAGCCATGAGAGATGCCTTCGTGGCCGCAGGATTG
GAAGCGGGACTCAAGAACGTGAGCTTGGACAAGGGATCCGGAAAGGCGAG
CAGCGCGAGGCGACAGCGGCAGCAAGACAGGGACGCCGCCCCCTACTCGA
GGCTTGGTGTGAACGGTGGCAAGAAAGTACCGTAATTCAAGTTGCAGCAG
GTGCTTGGACATTGCGCGTTGCTAACGAAATGCGACCAGCACAGCGTGTG
CGCGATGGCTCACGATGTACGATTTTGGTACTGATATGTCAAATGCGGGA
GGGTGCATCAGGACTTGTTTCTGATTTGTGTGTCTGCAGTGTCACATGCT
GCACTTTTCATCAGCAGCAGCTCCGAGTGAAGGTGAGTCAGTCTGGCCCT
CCTTGA
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