mRNA_4642 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349630
Unique NamemRNA_4642
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349630 vs. uniprot
Match: A0A835YRM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM3_9STRA)

HSP 1 Score: 588 bits (1515), Expect = 6.200e-210
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 2 
Query:  107 MDSGESILIKADNLTASDPIVDLHIADTRLANRDVCHEYSQCLLDAVLSSASGXXXXXXXXAASVLPADPEGIVQLARDAGDHSLLVVRANAIAHHFSLEVVCAPSPXXXXXXXXXXXXXXXXXXXXXXXXRVYARLLQADIRLIVTSGMRDVQKGFTPKDWLSSSGSAWMNEKQLLNFLTKLQRLRVLVTALSEGDLKDCAESLGYTSLAAQRAWAAAVTAPARLKRDGLTLQPGQLDNCASYREEMVRSGYPAHMVVYGGVTSGAPQQLLDFPLDAGEAILRAYLDLFSSDVTAALFVRAVEFRRSDAAWSCVAVGVPPPLPSRESGGAAAAAGDAAVPGM 1135
            MDSGESILIKADNLTASDPIVDLHIADTRLANRDVCHEYSQCLLDAVLSSASGXXXXXXXXAASVLPADPEGIVQLARDAGDHSLLVVRANAIAHHFSLEVVCAPSPXXXXXXXXXXXXXXXXXXXXXXXXRVYARLLQADIRLIVTSGMRDVQKGFTPKDWLSSSGSAWMNEKQLLNFLTKLQRLRVLVTALSEGDLKDCAESLGYTSLAAQRAWAAAVTAPARLKRDGLTLQPGQLDNCASYREEMVRSGYPAHMVVYGGVTSGAPQQLLDFPLDAGEAILRAYLDLFSSDVTAALFVRAVEFRRSDAAWSCVAVGVPPPLPSRESGGAAAAAGDAAVPGM
Sbjct:    1 MDSGESILIKADNLTASDPIVDLHIADTRLANRDVCHEYSQCLLDAVLSSASGXXXXXXXXAASVLPADPEGIVQLARDAGDHSLLVVRANAIAHHFSLEVVCAPSPXXXXXXXXXXXXXXXXXXXXXXXXRVYARLLQADIRLIVTSGMRDVQKGFTPKDWLSSSGSAWMNEKQLLNFLTKLQRLRVLVTALSEGDLKDCAESLGYTSLAAQRAWAAAVTAPARLKRDGLTLQPGQLDNCASYREEMVRSGYPAHMVVYGGVTSGAPQQLLDFPLDAGEAILRAYLDLFSSDVTAALFVRAVEFRRSDAAWSCVAVGVPPPLPSRESGGAAAAAGDAAVPGM 343
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BLAST of jgi.p|Trimin1|349630 vs. uniprot
Match: A0A7S2Y0Z3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0Z3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.580e-26
Identity = 91/340 (26.76%), Postives = 148/340 (43.53%), Query Frame = 2 
Query:   53 RAFIKHIDEVTGR*AVELMDSGESILIKADNLTASDPIVDLHIADTRLANRDVCHEYSQCLLDAVLSSASGXXXXXXXXAASVLPADPEGIVQLARDAGDHSLLVVRANAIAHHFSLEVVCAPSPXXXXXXXXXXXXXXXXXXXXXXXXRVYARLLQADIRL-IVTSGMRDVQKGFTPKDWLSSSGSAWMNEKQLLNFLTKLQRLRVLVTALSEGDLKDCAESLGYTSLAA--QRAWAAAVTAPARLKRDGLTLQPGQLDNCASYREEMVRSGYPAHMVVYGGVTSGAPQQLLDFPLDAGEAILRAYLDLFSSDVTAALFVRAVEFRRSDAAWSCVAVGV 1063
            RA     +    R AVE++ SGE +L++  NLT  DP+  L ++ T L+  D C +Y + L +++    S          ++      E   Q      DH ++ +      H   LE+    S                          + AR+L A ++   ++ G   V+ GF+  +W  S    WM+ KQLL F T L +L+  V  L+E +L  C  +  +  +    Q  WA  +T+P +L+R GLT+QP  L     +   +   G+P H+ +Y GV + +  QLLDFPL     I +    LF  +     F++A+E+       S  A G+
Sbjct:    1 RALTLSYNNSKDRWAVEVIGSGEKVLVRPVNLTIHDPVYALILSSTDLSCCDDCADYHELLYNSLAKEGSSSQGQPWPKTSADFMKALEDYHQ------DHQIVALSFPEFGHDLCLEIYRVTSDI------------------------IRARILHAWVKQECISEGGETVKTGFSGLEWFESEKCFWMDSKQLLVFFTDLLQLQNTVIDLTESELLSCLTTEPHNKMTRVDQIIWAKEMTSPEQLERFGLTMQPYSLSLFEDHANYLASLGFPEHLTIYTGVGTSSQVQLLDFPLSKACPIFQLTQKLFHENCQPYQFIKAIEWYNQPGGCSYRAAGI 310
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349630 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YRM3_9STRA6.200e-210100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y0Z3_9STRA1.580e-2626.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:567403..569553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349630|estExt_Genemark1.C_Ctg_460089
Hectar predicted targeting categoryother localisation
TranscriptId349952
TrackFilteredModels1
ProteinId349630
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349630gene_4642Tribonema minus UTEX_B_3156 geneContig_46 567403..569553 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4642_1exon_4642_1Tribonema minus UTEX_B_3156 exonContig_46 567403..568033 +
exon_4642_2exon_4642_2Tribonema minus UTEX_B_3156 exonContig_46 568653..568871 +
exon_4642_3exon_4642_3Tribonema minus UTEX_B_3156 exonContig_46 569266..569553 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4642UTR5_4642Tribonema minus UTEX_B_3156 five_prime_UTRContig_46 567403..567508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4642CDS_4642Tribonema minus UTEX_B_3156 CDSContig_46 567509..568033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349630Trimin1|349630|estExt_Genemark1.C_Ctg_460089Tribonema minus UTEX_B_3156 polypeptideContig_46 567509..569553 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4642 ID=mRNA_4642|Name=jgi.p|Trimin1|349630|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1138bp|location=Sequence derived from alignment at Contig_46:567403..569553+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGAAGGCTAGTGCTTCTGCATGGACTCTCTGCCGCACGCTACAACGGGC
GCAGAGCCTTCATCAAGCACATTGACGAAGTCACTGGTCGCTGAGCAGTG
GAGCTGATGGACTCGGGAGAATCCATTCTAATAAAAGCAGACAACCTGAC
AGCGAGTGACCCGATCGTGGACCTGCACATCGCGGACACGCGCCTGGCCA
ACCGCGATGTCTGCCACGAGTACAGCCAGTGCCTGCTGGACGCGGTGCTC
AGCAGCGCCAGCGGCGGCCGCAGAAGCAGCCCGCCGCCGGCTGCCAGCGT
GCTGCCTGCGGACCCGGAAGGGATCGTGCAGCTGGCGCGGGATGCAGGCG
ACCACTCCCTGCTAGTTGTGAGAGCCAATGCGATCGCGCACCATTTCAGC
CTGGAGGTTGTGTGCGCTCCGTCGCCGCCGCCGCCGCCATCAGCAGCAAC
GTCAGCGGCAGCTGAGCAGCAGGGCCCGGAAGCGCAACAGCGACGGCGCC
GCGTGTACGCGCGCCTGCTGCAGGCTGACATCAGGCTCATCGTCACCTCC
GGCATGCGCGATGTGCAGAAGGGGTTCACGCCAAAGGACTGGCTGTCATC
TTCTGGGTCTGCATGGATGAACGAGAAGCAGCTGCTGAACTTCCTGACCA
AGCTCCAGCGGCTGCGCGTGCTCGTCACGGCGCTATCCGAGGGCGACCTC
AAGGACTGTGCCGAGTCGCTCGGCTACACGAGCCTCGCGGCGCAGCGCGC
GTGGGCGGCGGCGGTCACCGCGCCCGCGCGCCTCAAGCGCGACGGGCTCA
CGCTGCAGCCGGGCCAACTCGACAACTGCGCGTCGTATCGGGAGGAGATG
GTCCGCAGCGGCTACCCCGCGCACATGGTCGTGTACGGCGGCGTCACCAG
CGGCGCCCCGCAGCAGCTGCTCGACTTCCCGCTCGACGCCGGCGAGGCCA
TCCTGCGCGCGTACCTCGACCTCTTCAGCAGCGACGTCACCGCGGCGCTG
TTCGTGCGCGCCGTCGAGTTCCGCCGCAGCGATGCGGCGTGGTCGTGCGT
GGCGGTGGGCGTGCCGCCGCCGCTGCCGTCGCGGGAGAGCGGAGGTGCTG
CGGCTGCCGCCGGTGACGCTGCTGTGCCGGGCATGTGA
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protein sequence of jgi.p|Trimin1|349630

>Trimin1|349630|estExt_Genemark1.C_Ctg_460089 ID=Trimin1|349630|estExt_Genemark1.C_Ctg_460089|Name=jgi.p|Trimin1|349630|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=344bp
MDSGESILIKADNLTASDPIVDLHIADTRLANRDVCHEYSQCLLDAVLSS
ASGGRRSSPPPAASVLPADPEGIVQLARDAGDHSLLVVRANAIAHHFSLE
VVCAPSPPPPPSAATSAAAEQQGPEAQQRRRRVYARLLQADIRLIVTSGM
RDVQKGFTPKDWLSSSGSAWMNEKQLLNFLTKLQRLRVLVTALSEGDLKD
CAESLGYTSLAAQRAWAAAVTAPARLKRDGLTLQPGQLDNCASYREEMVR
SGYPAHMVVYGGVTSGAPQQLLDFPLDAGEAILRAYLDLFSSDVTAALFV
RAVEFRRSDAAWSCVAVGVPPPLPSRESGGAAAAAGDAAVPGM*
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mRNA from alignment at Contig_46:567403..569553+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4642 ID=mRNA_4642|Name=jgi.p|Trimin1|349630|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2151bp|location=Sequence derived from alignment at Contig_46:567403..569553+ (Tribonema minus UTEX_B_3156 )
GGGAAGGCTAGTGCTTCTGCATGGACTCTCTGCCGCACGCTACAACGGGC
GCAGAGCCTTCATCAAGCACATTGACGAAGTCACTGGTCGCTGAGCAGTG
GAGCTGATGGACTCGGGAGAATCCATTCTAATAAAAGCAGACAACCTGAC
AGCGAGTGACCCGATCGTGGACCTGCACATCGCGGACACGCGCCTGGCCA
ACCGCGATGTCTGCCACGAGTACAGCCAGTGCCTGCTGGACGCGGTGCTC
AGCAGCGCCAGCGGCGGCCGCAGAAGCAGCCCGCCGCCGGCTGCCAGCGT
GCTGCCTGCGGACCCGGAAGGGATCGTGCAGCTGGCGCGGGATGCAGGCG
ACCACTCCCTGCTAGTTGTGAGAGCCAATGCGATCGCGCACCATTTCAGC
CTGGAGGTTGTGTGCGCTCCGTCGCCGCCGCCGCCGCCATCAGCAGCAAC
GTCAGCGGCAGCTGAGCAGCAGGGCCCGGAAGCGCAACAGCGACGGCGCC
GCGTGTACGCGCGCCTGCTGCAGGCTGACATCAGGCTCATCGTCACCTCC
GGCATGCGCGATGTGCAGAAGGGGTTCACGCCAAAGGACTGGCTGTCATC
TTCTGGGTCTGCATGGATGAACGAGAAGCAGGTGCCCCTCATGCAACCAC
AACTATCAACTTCAACTTGAGTACTTCTACATGCCGAGGGCATTTTCAAC
TTATGATATGTCCACGACGGTAGCAGTTCTTGCTGATGCCATGTACATTT
TTTATCATATATTTGTCGTGAATGAATCCTGTCAAGCCTCTTCGCGATCG
TTGCCGCCTCGACGCTACTGAACGTCATGCACTGCGCAGCAGCAGCTTGG
TATGCACCTGAGACCTCGTTTGCATACCGCTGGCTGTGAGTTGCGTGAAG
CAGTCGCACTTCTATGTACAATATGTATTGCCTGCGTGTGTTCCTCATGC
GCTGCTGATTGCAGATACGAGCTCTAGTAGGTGGCGCGTGCGCCATCCCA
ACAGCCACTCCATGCGCGCCCTGCAAGTTCGCCGCGATGCGCACTGCAGC
GACAGCAAGCAACCATCATCAGTAACACCCCCAGTATAGCAGCACTTTCC
TTCCAACAGCTCACGGCTGCCGACAAACTCCTCAACCCAACTGCGAACAC
GCAGCGCGCTGACCGCGTGGCGCCGCTGCGCCCCCCCCCCCCCCCCCCTC
GCGCCGCTCCCTCTAAACGCGTCGCTCACCTTGCCCCCCCCCCGCAACAG
CTGCTGAACTTCCTGACCAAGCTCCAGCGGCTGCGCGTGCTCGTCACGGC
GCTATCCGAGGGCGACCTCAAGGACTGTGCCGAGTCGCTCGGCTACACGA
GCCTCGCGGCGCAGCGCGCGTGGGCGGCGGCGGTCACCGCGCCCGCGCGC
CTCAAGCGCGACGGGCTCACGCTGCAGCCGGGCCAACTCGACAACTGCGC
GTCGTATCGGGAGGAGATGGTGAGCGGGGTCGGTGTTTTTGTCTCGTGTT
CCCGCTTCGCTGTCAGGCACTCTATGAATGCCGCCACGACCTTACACCAT
GTAGGGACCCGCACCCCCCTCCATTGAGATACACGGGGCCGCACCGTGCG
CTGACACGACCTCTCCTCATCGCAATGCACGGGGCGCGCAGCGACGCAGC
CGCTCGTTCATGCGGCACGCGCCTGTGCAGTCGCCGCATCCAACATCTGT
GACATGCGCGGAGCGTGGACACACTTGCTACGAGCGCACGCACACAAGAC
CTGCTCCGCAATCGCGCACGCGCCACCTCACTTAGTTGAAGCGCACAACG
CAGCGCTCAGAGACTGTGGATGCCCCCCTCCGTGCGGCGCCGCGCCCCCG
CCCCCGCCCGCAGGTCCGCAGCGGCTACCCCGCGCACATGGTCGTGTACG
GCGGCGTCACCAGCGGCGCCCCGCAGCAGCTGCTCGACTTCCCGCTCGAC
GCCGGCGAGGCCATCCTGCGCGCGTACCTCGACCTCTTCAGCAGCGACGT
CACCGCGGCGCTGTTCGTGCGCGCCGTCGAGTTCCGCCGCAGCGATGCGG
CGTGGTCGTGCGTGGCGGTGGGCGTGCCGCCGCCGCTGCCGTCGCGGGAG
AGCGGAGGTGCTGCGGCTGCCGCCGGTGACGCTGCTGTGCCGGGCATGTG
A
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Coding sequence (CDS) from alignment at Contig_46:567403..569553+

>mRNA_4642 ID=mRNA_4642|Name=jgi.p|Trimin1|349630|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1032bp|location=Sequence derived from alignment at Contig_46:567403..569553+ (Tribonema minus UTEX_B_3156 )
ATGGACTCGGGAGAATCCATTCTAATAAAAGCAGACAACCTGACAGCGAG
TGACCCGATCGTGGACCTGCACATCGCGGACACGCGCCTGGCCAACCGCG
ATGTCTGCCACGAGTACAGCCAGTGCCTGCTGGACGCGGTGCTCAGCAGC
GCCAGCGGCGGCCGCAGAAGCAGCCCGCCGCCGGCTGCCAGCGTGCTGCC
TGCGGACCCGGAAGGGATCGTGCAGCTGGCGCGGGATGCAGGCGACCACT
CCCTGCTAGTTGTGAGAGCCAATGCGATCGCGCACCATTTCAGCCTGGAG
GTTGTGTGCGCTCCGTCGCCGCCGCCGCCGCCATCAGCAGCAACGTCAGC
GGCAGCTGAGCAGCAGGGCCCGGAAGCGCAACAGCGACGGCGCCGCGTGT
ACGCGCGCCTGCTGCAGGCTGACATCAGGCTCATCGTCACCTCCGGCATG
CGCGATGTGCAGAAGGGGTTCACGCCAAAGGACTGGCTGTCATCTTCTGG
GTCTGCATGGATGAACGAGAAGCAGCTGCTGAACTTCCTGACCAAGCTCC
AGCGGCTGCGCGTGCTCGTCACGGCGCTATCCGAGGGCGACCTCAAGGAC
TGTGCCGAGTCGCTCGGCTACACGAGCCTCGCGGCGCAGCGCGCGTGGGC
GGCGGCGGTCACCGCGCCCGCGCGCCTCAAGCGCGACGGGCTCACGCTGC
AGCCGGGCCAACTCGACAACTGCGCGTCGTATCGGGAGGAGATGGTCCGC
AGCGGCTACCCCGCGCACATGGTCGTGTACGGCGGCGTCACCAGCGGCGC
CCCGCAGCAGCTGCTCGACTTCCCGCTCGACGCCGGCGAGGCCATCCTGC
GCGCGTACCTCGACCTCTTCAGCAGCGACGTCACCGCGGCGCTGTTCGTG
CGCGCCGTCGAGTTCCGCCGCAGCGATGCGGCGTGGTCGTGCGTGGCGGT
GGGCGTGCCGCCGCCGCTGCCGTCGCGGGAGAGCGGAGGTGCTGCGGCTG
CCGCCGGTGACGCTGCTGTGCCGGGCATGTGA
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