mRNA_4636 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349626
Unique NamemRNA_4636
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349626 vs. uniprot
Match: A0A836CBJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBJ9_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.500e-76
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 MLDQQVHALNRPTQPQRGHEAPRPHLHFRIDRMLAWDILEAPERPLVIVQLCALLQQPRDTPYAALQRAYRAQVKRCHPDVLAPDADAEAAIAHFHALVAAWDRALPALKRGG 339
            MLDQQVHALNRPTQPQRGHEAPRPHLHFRIDRMLAWDILEAPERPLVIVQLCALLQQPRDTPYAALQRAYRAQVKRCHPDVLAPDADAEAAIAHFHALVAAWDRALPALKRGG
Sbjct:    1 MLDQQVHALNRPTQPQRGHEAPRPHLHFRIDRMLAWDILEAPERPLVIVQLCALLQQPRDTPYAALQRAYRAQVKRCHPDVLAPDADAEAAIAHFHALVAAWDRALPALKRGG 113
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349626 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CBJ9_9STRA2.500e-76100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:540583..541016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349626|estExt_Genemark1.C_Ctg_460083
Hectar predicted targeting categoryother localisation
TranscriptId349948
TrackFilteredModels1
ProteinId349626
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349626gene_4636Tribonema minus UTEX_B_3156 geneContig_46 540583..541016 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4636_2exon_4636_2Tribonema minus UTEX_B_3156 exonContig_46 540583..540811 -
exon_4636_1exon_4636_1Tribonema minus UTEX_B_3156 exonContig_46 540898..541016 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4636UTR3_4636Tribonema minus UTEX_B_3156 three_prime_UTRContig_46 540583..540588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4636CDS_4636Tribonema minus UTEX_B_3156 CDSContig_46 540898..541016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349626Trimin1|349626|estExt_Genemark1.C_Ctg_460083Tribonema minus UTEX_B_3156 polypeptideContig_46 540589..541016 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4636 ID=mRNA_4636|Name=jgi.p|Trimin1|349626|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_46:540583..541016- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGATCAGCAAGTGCACGCCCTCAATCGGCCTACTCAGCCGCAGCG
CGGCCACGAGGCCCCACGCCCGCATCTACATTTTCGTATCGATCGGATGC
TGGCGTGGGACATTCTAGAGGCGCCGGAGCGGCCGCTGGTCATCGTGCAG
CTGTGCGCGCTGCTGCAGCAGCCGCGCGACACGCCGTACGCGGCGCTGCA
GCGCGCGTACCGCGCGCAGGTCAAGCGCTGCCACCCCGACGTGCTGGCGC
CGGACGCCGACGCGGAGGCCGCCATCGCGCACTTCCACGCGCTGGTGGCG
GCGTGGGACCGCGCGCTGCCGGCGCTGAAGCGCGGCGGATAATGCGGG
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protein sequence of jgi.p|Trimin1|349626

>Trimin1|349626|estExt_Genemark1.C_Ctg_460083 ID=Trimin1|349626|estExt_Genemark1.C_Ctg_460083|Name=jgi.p|Trimin1|349626|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
MLDQQVHALNRPTQPQRGHEAPRPHLHFRIDRMLAWDILEAPERPLVIVQ
LCALLQQPRDTPYAALQRAYRAQVKRCHPDVLAPDADAEAAIAHFHALVA
AWDRALPALKRGG*
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mRNA from alignment at Contig_46:540583..541016-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4636 ID=mRNA_4636|Name=jgi.p|Trimin1|349626|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=434bp|location=Sequence derived from alignment at Contig_46:540583..541016- (Tribonema minus UTEX_B_3156 )
ATGCTCGATCAGCAAGTGCACGCCCTCAATCGGCCTACTCAGCCGCAGCG
CGGCCACGAGGCCCCACGCCCGCATCTACATTTTCGTATCGATCGGATGC
TGGCGTGGGACATTCTAGAGTACGTCCAGGCGCATCACCGCAGTCACCGC
TCAACCAATCCGCAGCGCCGCCGCCGCCGCCGCCACCGCTGCGGCATCCG
CCCAGGGCGCCGGAGCGGCCGCTGGTCATCGTGCAGCTGTGCGCGCTGCT
GCAGCAGCCGCGCGACACGCCGTACGCGGCGCTGCAGCGCGCGTACCGCG
CGCAGGTCAAGCGCTGCCACCCCGACGTGCTGGCGCCGGACGCCGACGCG
GAGGCCGCCATCGCGCACTTCCACGCGCTGGTGGCGGCGTGGGACCGCGC
GCTGCCGGCGCTGAAGCGCGGCGGATAATGCGGG
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Coding sequence (CDS) from alignment at Contig_46:540583..541016-

>mRNA_4636 ID=mRNA_4636|Name=jgi.p|Trimin1|349626|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_46:540583..541016- (Tribonema minus UTEX_B_3156 )
ATGCTCGATCAGCAAGTGCACGCCCTCAATCGGCCTACTCAGCCGCAGCG
CGGCCACGAGGCCCCACGCCCGCATCTACATTTTCGTATCGATCGGATGC
TGGCGTGGGACATTCTAGAGGCGCCGGAGCGGCCGCTGGTCATCGTGCAG
CTGTGCGCGCTGCTGCAGCAGCCGCGCGACACGCCGTACGCGGCGCTGCA
GCGCGCGTACCGCGCGCAGGTCAAGCGCTGCCACCCCGACGTGCTGGCGC
CGGACGCCGACGCGGAGGCCGCCATCGCGCACTTCCACGCGCTGGTGGCG
GCGTGGGACCGCGCGCTGCCGGCGCTGAAGCGCGGCGGATAA
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