mRNA_4631 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349622
Unique Name	mRNA_4631
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349622 vs. uniprot
Match: A0A835YVK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVK2_9STRA)

HSP 1 Score: 434 bits (1117), Expect = 3.300e-150
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1

Query:    1 MRISEALLAVTLLAAGANARWTLEADAQFITEAPTEAPXXXXXXXXXTPGCLCETVTLTGVPDADPAPLCPGVKYDVPVVTAEDNCGNARAVDVLVDYSTNSGDRCATAIYTFTAACPLLDGGGGGPDEVTRVTSRGVTAERIRPVVTLNADADCHYTAQDFVTDCAAAGGAGAYVDLKSVGIAGDVCTHRCRPGGVDAYVIAANVCGDPFDFVLPLDVCSAAEA 675
            MRISEALLAVTLLAAGANARWTLEADAQFITEAPTEAPXXXXXXXXXTPGCLCETVTLTGVPDADPAPLCPGVKYDVPVVTAEDNCGNARAVDVLVDYSTNSGDRCATAIYTFTAACPLLDGGGGGPDEVTRVTSRGVTAERIRPVVTLNADADCHYTAQDFVTDCAAAGGAGAYVDLKSVGIAGDVCTHRCRPGGVDAYVIAANVCGDPFDFVLPLDVCSAAEA
Sbjct:    1 MRISEALLAVTLLAAGANARWTLEADAQFITEAPTEAPXXXXXXXXXTPGCLCETVTLTGVPDADPAPLCPGVKYDVPVVTAEDNCGNARAVDVLVDYSTNSGDRCATAIYTFTAACPLLDGGGGGPDEVTRVTSRGVTAERIRPVVTLNADADCHYTAQDFVTDCAAAGGAGAYVDLKSVGIAGDVCTHRCRPGGVDAYVIAANVCGDPFDFVLPLDVCSAAEA 225

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349622 vs. uniprot

BLAST of jgi.p|Trimin1|349622 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YVK2_9STRA	3.300e-150	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_46	contig	Contig_46:518423..521518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349622\|estExt_Genemark1.C_Ctg_460078
Hectar predicted targeting category	signal peptide
TranscriptId	349944
Track	FilteredModels1
ProteinId	349622

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349622	gene_4631	Tribonema minus UTEX_B_3156	gene	Contig_46 518423..521518 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349622	Trimin1\|349622\|estExt_Genemark1.C_Ctg_460078	Tribonema minus UTEX_B_3156	polypeptide	Contig_46 518423..520867 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4631_1	exon_4631_1	Tribonema minus UTEX_B_3156	exon	Contig_46 518423..518450 +
exon_4631_2	exon_4631_2	Tribonema minus UTEX_B_3156	exon	Contig_46 519520..519787 +
exon_4631_3	exon_4631_3	Tribonema minus UTEX_B_3156	exon	Contig_46 520081..520356 +
exon_4631_4	exon_4631_4	Tribonema minus UTEX_B_3156	exon	Contig_46 520762..521518 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4631	CDS_4631	Tribonema minus UTEX_B_3156	CDS	Contig_46 518423..518450 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_4631	UTR3_4631	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_46 520868..521518 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_46:518423..521518+
coding sequence from alignment at Contig_46:518423..521518+

spliced messenger RNA

>mRNA_4631 ID=mRNA_4631|Name=jgi.p|Trimin1|349622|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1329bp|location=Sequence derived from alignment at Contig_46:518423..521518+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATCAGCGAAGCTCTTCTCGCAGTGACGCTCCTCGCGGCCGGCGC
CAACGCGCGCTGGACCCTGGAGGCTGACGCCCAGTTCATCACGGAAGCCC
CCACGGAGGCCCCCACGAGCCCCGCCCCCACCGCGGCGCCCACCCCCGGC
TGCCTGTGCGAGACGGTCACGCTGACGGGCGTGCCTGACGCGGACCCCGC
ACCGCTGTGCCCCGGCGTCAAGTACGACGTGCCCGTGGTGACGGCAGAGG
ACAACTGCGGCAACGCGCGCGCGGTGGACGTCCTCGTTGACTACAGCACC
AACAGCGGCGACCGCTGCGCCACGGCCATCTACACGTTCACGGCGGCGTG
CCCGCTGCTCGACGGCGGCGGCGGCGGCCCCGACGAGGTGACCCGCGTCA
CCAGCAGGGGCGTCACCGCGGAGCGCATCCGCCCAGTGGTGACGCTCAAC
GCGGACGCGGACTGCCACTACACGGCGCAGGACTTTGTGACGGACTGCGC
GGCAGCGGGCGGCGCGGGGGCGTATGTGGACCTCAAGAGCGTGGGGATTG
CGGGCGACGTGTGTACGCACAGGTGCCGCCCCGGCGGCGTGGACGCCTAC
GTCATCGCGGCCAACGTCTGCGGCGACCCCTTCGACTTTGTCCTGCCGCT
GGACGTGTGCAGCGCCGCTGAGGCGTGAGGCGCGCTCCCCACGCGACGCG
CGGGCGGCAGGGGCTGGCGCGTGCTGCCGCCGCGGCGCTGGCACTGCGCA
ATCCCACTGCCTCTGCATGTACATTCCGGCGAGAAGCGACTAGACAAGAG
CCCGAGCCTGCCGCTCGATGCGCTCTGCTGGCAATCATTACAGCCCCTTG
CCCCCCCAATGCGCTCTGCTGGGTGTCTGACACACGGCATGCGCGCCACC
GCCGCACACCCCTGCGTTCCGCGCGCGGCGGCGCGGCGCGCGCCGTGACC
GCCGCGCGCCTTCGGCAGCTCTTTGAGCGTTGATGGCAGGGGCGCTGCGG
GCGTGCTTTTGGAGTCTTACCGTGTGGCGTTCCGAAGGGCGCGGCGCTGC
GCGACGACGCGTGTGTTTCGGCGGTGTCGTGGCGGTTTCGTGAGCGAGTA
TACTTCTATGACAATTGCGGCGCTGAAGCCCTGGTGCGTGTGCTGCGTGC
GCGGCCGCCCTGCCCGCGCGCGGTCCCGTGGCTGTGACGCGTATTGATAC
AGCGTTGTTGCTTGAGCATTGTTACAACAACTGCGCGTGTGCGGATGGAA
AGGCAAGGAATTTGAGAAAGTCGATGGCGACGGAGGTATATCGTGGAAGT
GCAAGGACAATGAAAATGGTGGACATTTC

protein sequence of jgi.p|Trimin1|349622

>Trimin1|349622|estExt_Genemark1.C_Ctg_460078 ID=Trimin1|349622|estExt_Genemark1.C_Ctg_460078|Name=jgi.p|Trimin1|349622|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=226bp
MRISEALLAVTLLAAGANARWTLEADAQFITEAPTEAPTSPAPTAAPTPG
CLCETVTLTGVPDADPAPLCPGVKYDVPVVTAEDNCGNARAVDVLVDYST
NSGDRCATAIYTFTAACPLLDGGGGGPDEVTRVTSRGVTAERIRPVVTLN
ADADCHYTAQDFVTDCAAAGGAGAYVDLKSVGIAGDVCTHRCRPGGVDAY
VIAANVCGDPFDFVLPLDVCSAAEA*

mRNA from alignment at Contig_46:518423..521518+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4631 ID=mRNA_4631|Name=jgi.p|Trimin1|349622|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3096bp|location=Sequence derived from alignment at Contig_46:518423..521518+ (Tribonema minus UTEX_B_3156 )
ATGCGCATCAGCGAAGCTCTTCTCGCAGGTAACACCCAAGGTGCAATCTT
TTATTGTGGTGGTGAACAACAGTGTGTAATGGTGCGCCGCGCAAGACAGG
GCGTGCTGCAAACATCAGAAACAGCTGCTCGCAGCAGCGCCCTCCTCTAC
AACCGCATGGTCGATGCCATCGGTGTTTGTTCGCACTATTCTGCCAGTAG
GGGTACGTTTGATGTTGCTGACATAGCTGCTGGCGTTGACCGCTGCAGCG
CCCTCTCATCTCGGCGGAGCCCATCTGATTGCTGCATCTCGCCATCTTTG
CCACTAGGACTTGTGTGTTGTACAGGCACTTCCGTCTACTGTTCATTGTT
CATTGTTGGTCAACAGTTTTTCAAAGCATGCTGCTGCTCCCACCGTTTTC
GATGGACGCTGCAGCGGATAGAGACGAGTGGGCTTAAGGTGCTCGTGCAG
TGTTGTGACGTGATGCAGCTGCCCGCAATTGGTGCTGATGGGCTGGTTTG
CTAGCCTCAACACATTCAACGGCATTTTCCTTAACGGCTGACGCTGCGGG
AAATGCATCGCGGCTTTTATATCGTTCGTGGCACGATCACGCACGGTGAT
GGTCTACGCTCTGCAAAGTCGTCACCCCATTGACCTCATTCGCTTTTGTC
AAACTGCATCTTTATCGTAACCCTATGAACATTTGCCGTTCTCATCGTTG
CACCGTCGGGGACCCCGCTACCCACAGTCTCGATTAAGTTTGATTGGTTG
ACCTGGCAGGCATCTGCACTGGCTGGCCCTCCGCACTTCCCCCCCTTTCC
CTTCAAACAGCATCACAACCTGCTCTTGACATCACACACATTACCGTCTC
CCCCTCACCCCCCCCAACCTCTCCAATCCGTGCTCGCCCGCGCTTCCGCG
CCCTCGCTCGCTTTCCCTGCCCCTACTTTCCACCGTCGTCAACACGCCGC
ACCTGGCGTACATTCCTTCCAATCCCCCTCACCTTCCCTCTCCCGAGGCC
GCGCACTGGCACCAAAATTCACACCCGTTCTCATCTCAAATCACCCCCCC
AACCCCCCCCCCCCCACACACGCGTCCCTCCCTCGCTCGCGCCTCAGTGA
CGCTCCTCGCGGCCGGCGCCAACGCGCGCTGGACCCTGGAGGCTGACGCC
CAGTTCATCACGGAAGCCCCCACGGAGGCCCCCACGAGCCCCGCCCCCAC
CGCGGCGCCCACCCCCGGCTGCCTGTGCGAGACGGTCACGCTGACGGGCG
TGCCTGACGCGGACCCCGCACCGCTGTGCCCCGGCGTCAAGTACGACGTG
CCCGTGGTGACGGCAGAGGACAACTGCGGCAACGCGCGCGCGGTGGACGT
CCTCGTTGACTACAGGTACGTGCGCGTGCAGAGCGCCGCGTGCAGCGCGC
GCATCCCCCGAGACGAGGAGCCTCTTGTGCGCGCCGACTTGCCTGCGCAG
CGCACGATGCGTGTGCGCGATCGCGCGCGCGTGCGGGCACCTGCATGTGC
AGCACAAGCGGCGTGTCGCACTCGCTCCGCACCGCCCCGCCCTCCGCTCG
CCTCGAGCGCCATGCGCACCGTTTGAAGGCCTTGCATCGCCGCTGAGCCT
CACCAACCCCCCCCTCCCCCCCCCCTCCCCCCCCTCGCCCCCCCCCTTGC
GACCGCAGCACCAACAGCGGCGACCGCTGCGCCACGGCCATCTACACGTT
CACGGCGGCGTGCCCGCTGCTCGACGGCGGCGGCGGCGGCCCCGACGAGG
TGACCCGCGTCACCAGCAGGGGCGTCACCGCGGAGCGCATCCGCCCAGTG
GTGACGCTCAACGCGGACGCGGACTGCCACTACACGGCGCAGGACTTTGT
GACGGACTGCGCGGCAGCGGGCGGCGCGGGGGCGTATGTGGACCTCAAGA
GCGTGGGGATTGCGGGCGACGTGTGTACGCACAGGTGAGCGCGCCCGGGC
GTCAGTGAGTGTGTATACGTGTAGCTTCCAGTAGGTGCGTGTACGTGGAG
CTGAATCTGAGTCTCGCGCTGGGCAGCGTGTTTAGGGCTGGGGTTGGGCG
AGCTCGCCGCGCTCCCCGCCATGTGCCTCGCGCGCGCCCGCGTCTCATTT
TGTGCCGCAGCATGCAGATCTGGCTCACGCGATGTCTGTGCTGATGAGGC
AGCGTGCATATCGCTTTGTCCAGCATGCGCGTCTCACGCCATGACGGCAA
GTGTGCGGTGTGTGCAAACAAGAAAATCTTGGTTTTTTGGCAAGCAAACA
CCTTTGAGCCCATTGCCAGCACAATTAGGTAGAAACATAGATTATTCACT
GCTGCTGCTCACTGCTGCTGCTGCGTACCGCCGCCGCAGGTGCCGCCCCG
GCGGCGTGGACGCCTACGTCATCGCGGCCAACGTCTGCGGCGACCCCTTC
GACTTTGTCCTGCCGCTGGACGTGTGCAGCGCCGCTGAGGCGTGAGGCGC
GCTCCCCACGCGACGCGCGGGCGGCAGGGGCTGGCGCGTGCTGCCGCCGC
GGCGCTGGCACTGCGCAATCCCACTGCCTCTGCATGTACATTCCGGCGAG
AAGCGACTAGACAAGAGCCCGAGCCTGCCGCTCGATGCGCTCTGCTGGCA
ATCATTACAGCCCCTTGCCCCCCCAATGCGCTCTGCTGGGTGTCTGACAC
ACGGCATGCGCGCCACCGCCGCACACCCCTGCGTTCCGCGCGCGGCGGCG
CGGCGCGCGCCGTGACCGCCGCGCGCCTTCGGCAGCTCTTTGAGCGTTGA
TGGCAGGGGCGCTGCGGGCGTGCTTTTGGAGTCTTACCGTGTGGCGTTCC
GAAGGGCGCGGCGCTGCGCGACGACGCGTGTGTTTCGGCGGTGTCGTGGC
GGTTTCGTGAGCGAGTATACTTCTATGACAATTGCGGCGCTGAAGCCCTG
GTGCGTGTGCTGCGTGCGCGGCCGCCCTGCCCGCGCGCGGTCCCGTGGCT
GTGACGCGTATTGATACAGCGTTGTTGCTTGAGCATTGTTACAACAACTG
CGCGTGTGCGGATGGAAAGGCAAGGAATTTGAGAAAGTCGATGGCGACGG
AGGTATATCGTGGAAGTGCAAGGACAATGAAAATGGTGGACATTTC

Coding sequence (CDS) from alignment at Contig_46:518423..521518+

>mRNA_4631 ID=mRNA_4631|Name=jgi.p|Trimin1|349622|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=678bp|location=Sequence derived from alignment at Contig_46:518423..521518+ (Tribonema minus UTEX_B_3156 )
ATGCGCATCAGCGAAGCTCTTCTCGCAGTGACGCTCCTCGCGGCCGGCGC
CAACGCGCGCTGGACCCTGGAGGCTGACGCCCAGTTCATCACGGAAGCCC
CCACGGAGGCCCCCACGAGCCCCGCCCCCACCGCGGCGCCCACCCCCGGC
TGCCTGTGCGAGACGGTCACGCTGACGGGCGTGCCTGACGCGGACCCCGC
ACCGCTGTGCCCCGGCGTCAAGTACGACGTGCCCGTGGTGACGGCAGAGG
ACAACTGCGGCAACGCGCGCGCGGTGGACGTCCTCGTTGACTACAGCACC
AACAGCGGCGACCGCTGCGCCACGGCCATCTACACGTTCACGGCGGCGTG
CCCGCTGCTCGACGGCGGCGGCGGCGGCCCCGACGAGGTGACCCGCGTCA
CCAGCAGGGGCGTCACCGCGGAGCGCATCCGCCCAGTGGTGACGCTCAAC
GCGGACGCGGACTGCCACTACACGGCGCAGGACTTTGTGACGGACTGCGC
GGCAGCGGGCGGCGCGGGGGCGTATGTGGACCTCAAGAGCGTGGGGATTG
CGGGCGACGTGTGTACGCACAGGTGCCGCCCCGGCGGCGTGGACGCCTAC
GTCATCGCGGCCAACGTCTGCGGCGACCCCTTCGACTTTGTCCTGCCGCT
GGACGTGTGCAGCGCCGCTGAGGCGTGA