mRNA_4598 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349616
Unique Name	mRNA_4598
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349616 vs. uniprot
Match: A0A835YZW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW3_9STRA)

HSP 1 Score: 503 bits (1294), Expect = 2.840e-171
Identity = 422/429 (98.37%), Postives = 422/429 (98.37%), Query Frame = 2

Query:    2 MARRLAALLLVGQCLHQSIAVVSNLAQIPSAGPALWSANTNINASVRDALRAAKTELDKHTQGARGRTLLGLDDCSDGSAVLPSADVNDRLLAAARSAAAAYSERALTAPSAVGRAAFADGFGKLQEAVEARVRVASANHAACLLQLNARVAELVADVAAXXXXXATCCSGGSGDAXXXXXXXXXXXXXALVECARAAALEAVLEEVPSEALRHELPAVAALDSLDAFVDATALHELCGDGDEAAQQSPRKAAGAAGVVAADAAHLLPQLAAAVPRAAAAAKDAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAEQIRLVTKAASAAGRAXXXXXXXDPSGAVASIVARMAPPAPQALEAAAA 1288
            MARRLAALLLVGQCLHQSIAVVSNLAQIPSAGPALWSANTNINASVRDALRAAKTELDKHTQGARGRTLLGLDDCSDGSAVLPSADVNDRLLAAARSAAAAYSERALTAPSAVGRAAFADGFGKLQEAVEARVRVASANHAACLLQLNARVAELVADVAAXXXXXATCCSGGSGDAXXXXXXXXXXXXXALVECARAAALEAVLEEVPSEALRHELPAVAALDSLDAFVDATALHELCGDGDEAAQQSPRKAAGAAGVVAADAAHLLPQLAAAVPRAAAAAKDAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAEQIRLVTKAASAAGRA       DPSGAVASIVARMAPPAPQALEAAAA
Sbjct:    1 MARRLAALLLVGQCLHQSIAVVSNLAQIPSAGPALWSANTNINASVRDALRAAKTELDKHTQGARGRTLLGLDDCSDGSAVLPSADVNDRLLAAARSAAAAYSERALTAPSAVGRAAFADGFGKLQEAVEARVRVASANHAACLLQLNARVAELVADVAAXXXXXATCCSGGSGDAXXXXXXXXXXXXXALVECARAAALEAVLEEVPSEALRHELPAVAALDSLDAFVDATALHELCGDGDEAAQQSPRKAAGAAGVVAADAAHLLPQLAAAVPRAAAAAKDAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAEQIRLVTKAASAAGRASAAAAWADPSGAVASIVARMAPPAPQALEAAAA 429

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349616 vs. uniprot

BLAST of jgi.p|Trimin1|349616 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YZW3_9STRA	2.840e-171	98.37	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_46	contig	Contig_46:325973..328818 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349616\|estExt_Genemark1.C_Ctg_460052
Hectar predicted targeting category	signal peptide
TranscriptId	349938
Track	FilteredModels1
ProteinId	349616

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349616	gene_4598	Tribonema minus UTEX_B_3156	gene	Contig_46 325973..328818 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349616	Trimin1\|349616\|estExt_Genemark1.C_Ctg_460052	Tribonema minus UTEX_B_3156	polypeptide	Contig_46 326525..328817 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4598_3	exon_4598_3	Tribonema minus UTEX_B_3156	exon	Contig_46 325973..327510 -
exon_4598_2	exon_4598_2	Tribonema minus UTEX_B_3156	exon	Contig_46 327957..328126 -
exon_4598_1	exon_4598_1	Tribonema minus UTEX_B_3156	exon	Contig_46 328684..328818 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_4598	UTR3_4598	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_46 325973..326524 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4598	CDS_4598	Tribonema minus UTEX_B_3156	CDS	Contig_46 328684..328817 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_4598	UTR5_4598	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_46 328818..328818 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_46:325973..328818-
coding sequence from alignment at Contig_46:325973..328818-

spliced messenger RNA

>mRNA_4598 ID=mRNA_4598|Name=jgi.p|Trimin1|349616|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1843bp|location=Sequence derived from alignment at Contig_46:325973..328818- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CATGGCACGGCGACTGGCTGCGCTGCTGCTGGTAGGGCAATGCCTCCACC
AGTCAATCGCAGTGGTGTCAAATCTGGCGCAGATTCCCTCAGCAGGACCA
GCCCTGTGGTCTGCCAACACCAATATCAACGCCAGCGTGCGGGACGCTCT
GCGGGCGGCAAAGACGGAACTGGATAAGCACACCCAGGGTGCGCGCGGCC
GCACGCTGCTGGGCCTGGACGACTGCAGCGACGGCTCCGCGGTGCTGCCG
AGCGCCGATGTCAATGACCGCCTGCTCGCTGCCGCGCGCAGCGCTGCCGC
CGCATACAGCGAGCGCGCGCTCACCGCGCCGTCCGCCGTAGGCCGCGCCG
CCTTCGCGGACGGCTTCGGCAAGCTGCAGGAGGCGGTGGAGGCGCGCGTG
CGCGTCGCCTCCGCCAACCACGCCGCGTGCCTGCTGCAGCTAAATGCGCG
TGTCGCGGAGCTCGTCGCCGACGTCGCTGCAGATGCCGCGGCGGACGCCA
CGTGCTGCAGCGGCGGCAGCGGCGACGCGCAGCAGCAGCAGTGCGGCGGC
GGCGTCGCGGCGGCGGCGGCGCTGGTGGAGTGCGCGCGCGCGGCGGCGCT
GGAGGCGGTGCTGGAGGAGGTGCCGAGCGAGGCGCTGCGGCATGAGCTGC
CGGCCGTGGCGGCGCTCGACAGCCTGGATGCGTTCGTCGACGCGACCGCG
CTGCATGAGCTGTGCGGCGACGGCGACGAGGCGGCGCAGCAGTCGCCGCG
CAAGGCGGCGGGGGCGGCGGGCGTCGTCGCCGCGGACGCCGCGCACCTCC
TGCCGCAGCTCGCGGCGGCGGTGCCGCGCGCAGCAGCGGCGGCCAAGGAC
GCGGCCGCGCAGGCCGCGGCGGTCGCGCGCGGCGCCGCCGCGCACACCGC
CAAGGCTGCCAGGCACGCCGCGGCGCACACGGCGCGCGCTGCGCGCGACG
TCGCCGCGCACGCGCACCCGTCGGTGCGCATCGCGGCGGCGCACGCGGCG
CAGGTCGCGCGCATCGCGGCGACGCACGCGGCGGCGCTGGCGCGCGAGGC
GGCGGCGCTTGCGGCGCAGGTCGCGCGGCACGCGGTGGCGGGCGCGGCGC
TGCTGGCGGCGTCCGTCGCGGAGTGGTCCGCCTTCCTTGCGGAGCAGATC
CGGCTCGTGACGAAGGCGGCGAGCGCGGCGGGCAGGGCGAGCGCTGCTGC
GGCGTGGGCGGACCCCTCGGGCGCCGTGGCGTCCATCGTGGCTCGCATGG
CGCCGCCTGCGCCGCAGGCGTTGGAGGCGGCGGCGGCGTAGAGCTGGCAG
CAGCAGCACGCGCGCATCGCGCCGGCATCGTCAAGCGGACAAGGCGCTCT
GCTGCCACAGTCCGTCGGACAGCACGGCCATCAGCCCCAGTTTGCGCTAC
GCGTGATGTGTACGCGCGCTTTGTGGGGCAGAGCATCGCGCAGGCCGTGC
CCGTATGAGGCTCGCTCTTGGAGGTCAGCTGGGAGGTTGCACCGGAGGTG
GGAGCGCTGGCGTGCAGCCAAGCAACAATTATCTGCGTTTGCATCGCTGC
TGCACAGCCGTAGATGAATACACGAATGTGGGCGCGAGCGGCGCCAGACG
CGGTGCTTAGCGCTGGTGCCTGCGCGGGGTACATAGGGGGACGCGCCACA
GGGGTGTTGGCGCATGTAGATGAGGCAGGCGTCGCCGCTAGATTTAGTCT
TCGCTGGCACTTCCTCTGCAGGCGTGATACTATGTAGGAGGCGATCGAGA
ACACGGCTCTGTATACACGGGCCTTCAACACAGCACATCCAAATGTTTTC
CCTGGCAGTCTGGTGCCATGAATGTACAGCAGCTGCATTCATG

protein sequence of jgi.p|Trimin1|349616

>Trimin1|349616|estExt_Genemark1.C_Ctg_460052 ID=Trimin1|349616|estExt_Genemark1.C_Ctg_460052|Name=jgi.p|Trimin1|349616|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=430bp
MARRLAALLLVGQCLHQSIAVVSNLAQIPSAGPALWSANTNINASVRDAL
RAAKTELDKHTQGARGRTLLGLDDCSDGSAVLPSADVNDRLLAAARSAAA
AYSERALTAPSAVGRAAFADGFGKLQEAVEARVRVASANHAACLLQLNAR
VAELVADVAADAAADATCCSGGSGDAQQQQCGGGVAAAAALVECARAAAL
EAVLEEVPSEALRHELPAVAALDSLDAFVDATALHELCGDGDEAAQQSPR
KAAGAAGVVAADAAHLLPQLAAAVPRAAAAAKDAAAQAAAVARGAAAHTA
KAARHAAAHTARAARDVAAHAHPSVRIAAAHAAQVARIAATHAAALAREA
AALAAQVARHAVAGAALLAASVAEWSAFLAEQIRLVTKAASAAGRASAAA
AWADPSGAVASIVARMAPPAPQALEAAAA*

mRNA from alignment at Contig_46:325973..328818-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4598 ID=mRNA_4598|Name=jgi.p|Trimin1|349616|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2846bp|location=Sequence derived from alignment at Contig_46:325973..328818- (Tribonema minus UTEX_B_3156 )
CATGGCACGGCGACTGGCTGCGCTGCTGCTGGTAGGGCAATGCCTCCACC
AGTCAATCGCAGTGGTGTCAAATCTGGCGCAGATTCCCTCAGCAGGACCA
GCCCTGTGGTCTGCCAACACCAATATCAACGCCAGGTGAGAACGCGGATG
ATGCTTTCGAGCAGCAGGCAGCGTTGCAGGCTTGCGGGGCGTCATCGCAC
AGGAGAGTACACGCGTGGCCATCGTGCATGTCGTTGCAAGGGTGGCCCTC
GCAAAGGTCGAGAACAGATCGTCAAATACGTTAGCCTCACCAACCTGCAG
ATTGCAATCGCATCGGGTGTGGCAGCCGCGTCCAACAGTCGGGGCGCCTA
TAGGTTCACTGTTGGCGGAGCGACCACGAAGCGGACTGAGCAGCTGCTCG
TGCACCACGCCCTCCAACTGCATATGTTCATGAAGCTTGTTCTGCGCGCC
CTGGCGGCAGCATTCAGCGATGAAGCTAGCCCTCCGGCGCGTACGTAACG
GGTGGCGGATCATGCACCGGCTATCCTCGCTCATGTCGATGCTGCTCATC
ACAGGTTCTGAATCCCAGCTCTTCTCACCGTGTCTTACTTCATGCCACGT
TCGCCCCCCCCTCGCCCTCCGCCGTTCCGTGTCACGCAACATTCGCCGCC
AACACGCATCGCTCACGAGCCGCTGCCTTCTGCGCCCCTCAGCGTGCGGG
ACGCTCTGCGGGCGGCAAAGACGGAACTGGATAAGCACACCCAGGGTGCG
CGCGGCCGCACGCTGCTGGGCCTGGACGACTGCAGCGACGGCTCCGCGGT
GCTGCCGAGCGCCGATGTCAATGACCGCCTGCTCGCTGCCGCGCGCAGCG
CTGCCGCCGCATGTAAGTCGCTTACAGGTTTCTGCGGGGCGTGTCGTCTT
CATCAACTGGATCAGTGGCGCTCACTTATCATGCAAGACCGACAACGAGC
ACAGACTGCTACCTTGATTCACTAGGCAATGGCGACTGGTTTCAGGTTGC
TCGTACTCATGATGTTGTGATTGCTCGTGGAGAATTGATACCGACTGCGG
CTTGAGCTCAGGGGTCAGCGGGGCCACCAAATTTAGCAATGACCACATCT
CCTGCGTGCTGAAGGTGCTCAATAGCACATGCCCTCCATATCATGGCGCT
ACGTATATGCACATGGCTGGAAGCTAGCACATGCAGCAAAACCAGTAATG
CCAGGGAGAGTGGCAGCGGGCAACGGTGCCACTGCCCTCCGAACTTGCCA
GCGACACTTGCCTCACCCGCGCCCCCCCCCCCCCCCCCCCCCATTCTGCT
CCTCGCAGACAGCGAGCGCGCGCTCACCGCGCCGTCCGCCGTAGGCCGCG
CCGCCTTCGCGGACGGCTTCGGCAAGCTGCAGGAGGCGGTGGAGGCGCGC
GTGCGCGTCGCCTCCGCCAACCACGCCGCGTGCCTGCTGCAGCTAAATGC
GCGTGTCGCGGAGCTCGTCGCCGACGTCGCTGCAGATGCCGCGGCGGACG
CCACGTGCTGCAGCGGCGGCAGCGGCGACGCGCAGCAGCAGCAGTGCGGC
GGCGGCGTCGCGGCGGCGGCGGCGCTGGTGGAGTGCGCGCGCGCGGCGGC
GCTGGAGGCGGTGCTGGAGGAGGTGCCGAGCGAGGCGCTGCGGCATGAGC
TGCCGGCCGTGGCGGCGCTCGACAGCCTGGATGCGTTCGTCGACGCGACC
GCGCTGCATGAGCTGTGCGGCGACGGCGACGAGGCGGCGCAGCAGTCGCC
GCGCAAGGCGGCGGGGGCGGCGGGCGTCGTCGCCGCGGACGCCGCGCACC
TCCTGCCGCAGCTCGCGGCGGCGGTGCCGCGCGCAGCAGCGGCGGCCAAG
GACGCGGCCGCGCAGGCCGCGGCGGTCGCGCGCGGCGCCGCCGCGCACAC
CGCCAAGGCTGCCAGGCACGCCGCGGCGCACACGGCGCGCGCTGCGCGCG
ACGTCGCCGCGCACGCGCACCCGTCGGTGCGCATCGCGGCGGCGCACGCG
GCGCAGGTCGCGCGCATCGCGGCGACGCACGCGGCGGCGCTGGCGCGCGA
GGCGGCGGCGCTTGCGGCGCAGGTCGCGCGGCACGCGGTGGCGGGCGCGG
CGCTGCTGGCGGCGTCCGTCGCGGAGTGGTCCGCCTTCCTTGCGGAGCAG
ATCCGGCTCGTGACGAAGGCGGCGAGCGCGGCGGGCAGGGCGAGCGCTGC
TGCGGCGTGGGCGGACCCCTCGGGCGCCGTGGCGTCCATCGTGGCTCGCA
TGGCGCCGCCTGCGCCGCAGGCGTTGGAGGCGGCGGCGGCGTAGAGCTGG
CAGCAGCAGCACGCGCGCATCGCGCCGGCATCGTCAAGCGGACAAGGCGC
TCTGCTGCCACAGTCCGTCGGACAGCACGGCCATCAGCCCCAGTTTGCGC
TACGCGTGATGTGTACGCGCGCTTTGTGGGGCAGAGCATCGCGCAGGCCG
TGCCCGTATGAGGCTCGCTCTTGGAGGTCAGCTGGGAGGTTGCACCGGAG
GTGGGAGCGCTGGCGTGCAGCCAAGCAACAATTATCTGCGTTTGCATCGC
TGCTGCACAGCCGTAGATGAATACACGAATGTGGGCGCGAGCGGCGCCAG
ACGCGGTGCTTAGCGCTGGTGCCTGCGCGGGGTACATAGGGGGACGCGCC
ACAGGGGTGTTGGCGCATGTAGATGAGGCAGGCGTCGCCGCTAGATTTAG
TCTTCGCTGGCACTTCCTCTGCAGGCGTGATACTATGTAGGAGGCGATCG
AGAACACGGCTCTGTATACACGGGCCTTCAACACAGCACATCCAAATGTT
TTCCCTGGCAGTCTGGTGCCATGAATGTACAGCAGCTGCATTCATG

Coding sequence (CDS) from alignment at Contig_46:325973..328818-

>mRNA_4598 ID=mRNA_4598|Name=jgi.p|Trimin1|349616|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1290bp|location=Sequence derived from alignment at Contig_46:325973..328818- (Tribonema minus UTEX_B_3156 )
ATGGCACGGCGACTGGCTGCGCTGCTGCTGGTAGGGCAATGCCTCCACCA
GTCAATCGCAGTGGTGTCAAATCTGGCGCAGATTCCCTCAGCAGGACCAG
CCCTGTGGTCTGCCAACACCAATATCAACGCCAGCGTGCGGGACGCTCTG
CGGGCGGCAAAGACGGAACTGGATAAGCACACCCAGGGTGCGCGCGGCCG
CACGCTGCTGGGCCTGGACGACTGCAGCGACGGCTCCGCGGTGCTGCCGA
GCGCCGATGTCAATGACCGCCTGCTCGCTGCCGCGCGCAGCGCTGCCGCC
GCATACAGCGAGCGCGCGCTCACCGCGCCGTCCGCCGTAGGCCGCGCCGC
CTTCGCGGACGGCTTCGGCAAGCTGCAGGAGGCGGTGGAGGCGCGCGTGC
GCGTCGCCTCCGCCAACCACGCCGCGTGCCTGCTGCAGCTAAATGCGCGT
GTCGCGGAGCTCGTCGCCGACGTCGCTGCAGATGCCGCGGCGGACGCCAC
GTGCTGCAGCGGCGGCAGCGGCGACGCGCAGCAGCAGCAGTGCGGCGGCG
GCGTCGCGGCGGCGGCGGCGCTGGTGGAGTGCGCGCGCGCGGCGGCGCTG
GAGGCGGTGCTGGAGGAGGTGCCGAGCGAGGCGCTGCGGCATGAGCTGCC
GGCCGTGGCGGCGCTCGACAGCCTGGATGCGTTCGTCGACGCGACCGCGC
TGCATGAGCTGTGCGGCGACGGCGACGAGGCGGCGCAGCAGTCGCCGCGC
AAGGCGGCGGGGGCGGCGGGCGTCGTCGCCGCGGACGCCGCGCACCTCCT
GCCGCAGCTCGCGGCGGCGGTGCCGCGCGCAGCAGCGGCGGCCAAGGACG
CGGCCGCGCAGGCCGCGGCGGTCGCGCGCGGCGCCGCCGCGCACACCGCC
AAGGCTGCCAGGCACGCCGCGGCGCACACGGCGCGCGCTGCGCGCGACGT
CGCCGCGCACGCGCACCCGTCGGTGCGCATCGCGGCGGCGCACGCGGCGC
AGGTCGCGCGCATCGCGGCGACGCACGCGGCGGCGCTGGCGCGCGAGGCG
GCGGCGCTTGCGGCGCAGGTCGCGCGGCACGCGGTGGCGGGCGCGGCGCT
GCTGGCGGCGTCCGTCGCGGAGTGGTCCGCCTTCCTTGCGGAGCAGATCC
GGCTCGTGACGAAGGCGGCGAGCGCGGCGGGCAGGGCGAGCGCTGCTGCG
GCGTGGGCGGACCCCTCGGGCGCCGTGGCGTCCATCGTGGCTCGCATGGC
GCCGCCTGCGCCGCAGGCGTTGGAGGCGGCGGCGGCGTAG