Trimin1|349604|estExt_Genemark1.C_Ctg_460028 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349604
Unique NameTrimin1|349604|estExt_Genemark1.C_Ctg_460028
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length397
Homology
BLAST of jgi.p|Trimin1|349604 vs. uniprot
Match: A0A835YUD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD4_9STRA)

HSP 1 Score: 694 bits (1792), Expect = 5.820e-251
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0
Query:    1 MGWEISDDERDRQRTFHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMVHVDGTEPNVRTYDSLLSDMQAAGAVPPLRAYGPVLMACIMTRNDPRFRELTRELSHAEWASATELSNFYSRIVEGFVATGQLHAAVRILDGVAAAGRLSSRIVLPVLVHYARVLRDVPAVRGIVDAMRVRGARLLLAAWDMAIDTAWRAGDKRTATLNPYRLARPGVEPGRPMWTTETPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQLRNMRAQRQQGGAAAAAGHVLYLITGLGHLRGKHKGKVRAAVTAQLERAELKYSAVPGNAGVLKVVY 396
            MGWEISDDERDRQRTFHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMVHVDGTEPNVRTYDSLLSDMQAAGAVPPLRAYGPVLMACIMTRNDPRFRELTRELSHAEWASATELSNFYSRIVEGFVATGQLHAAVRILDGVAAAGRLSSRIVLPVLVHYARVLRDVPAVRGIVDAMRVRGARLLLAAWDMAIDTAWRAGDKRTATLNPYRLARPGVEPGRPMWTTETPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQLRNMRAQRQQGGAAAAAGHVLYLITGLGHLRGKHKGKVRAAVTAQLERAELKYSAVPGNAGVLKVVY
Sbjct:    1 MGWEISDDERDRQRTFHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMVHVDGTEPNVRTYDSLLSDMQAAGAVPPLRAYGPVLMACIMTRNDPRFRELTRELSHAEWASATELSNFYSRIVEGFVATGQLHAAVRILDGVAAAGRLSSRIVLPVLVHYARVLRDVPAVRGIVDAMRVRGARLLLAAWDMAIDTAWRAGDKRTATLNPYRLARPGVEPGRPMWTTETPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQLRNMRAQRQQGGAAAAAGHVLYLITGLGHLRGKHKGKVRAAVTAQLERAELKYSAVPGNAGVLKVVY 396          
BLAST of jgi.p|Trimin1|349604 vs. uniprot
Match: A0A835YVH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH2_9STRA)

HSP 1 Score: 304 bits (778), Expect = 5.180e-99
Identity = 188/274 (68.61%), Postives = 199/274 (72.63%), Query Frame = 0
Query:  127 MQAAGAVPPLRAYGPVLMACIMTRNDPRFRELTRELSHAEWASATELSNFYSRIVEGFVATGQLHAAVRILDGVAAAGRLSSRIVLPVLVHYARVLRDVPAVRGIVDAMRVRGARLLLAAWDMAIDTAWRAGDKRTATLNPYRLARPGVEPGRPMWTTETPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQLRNMRAQRQQGGAAAA----AGHVLYLITGLGHLRGKHKGKVRAAVTAQLERAELKYSAVPGNAGVLKVVY 396
            MQAAGAVPP+RAYGPVLMACIMT ND RFR LTRELSHAEW SATE  NFYSR++EGFV TGQL  AVRILDGV AAGRLSSRIV PVLVH AR LRDV  VRG+VDAMR RGA L  AAWDMAIDTA               LARPGVEPGRPMWTTETPAVA XXXXXXXX                     XXX    LQLR++RAQ             AGHVLY+ITGLGHLRG +KG+VRAAVTAQLE+AELKYS +PGNAGVLKVVY
Sbjct:    1 MQAAGAVPPVRAYGPVLMACIMTGNDARFRALTRELSHAEWESATEHDNFYSRLLEGFVKTGQLRVAVRILDGVGAAGRLSSRIVQPVLVHCARRLRDVAGVRGVVDAMRARGAPLSQAAWDMAIDTA---------------LARPGVEPGRPMWTTETPAVAAXXXXXXXXERADAPRVTIMDFHYHSAGTAXXXLM--LQLRDVRAQXXXXXXXXXXXXXAGHVLYMITGLGHLRGTNKGRVRAAVTAQLEQAELKYSLIPGNAGVLKVVY 257          
BLAST of jgi.p|Trimin1|349604 vs. uniprot
Match: A0A835YS91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS91_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.660e-58
Identity = 102/150 (68.00%), Postives = 114/150 (76.00%), Query Frame = 0
Query:    1 MGWEISDDERDRQRTFHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMVHVDGTEPNVRTYDS----------------LLSDMQAAGAVP 134
            MGWEISDD RDR R FHI ALARA+RA DAWHTC E MQ+GFRPGARTVQQVVCALAR+R  RMV RFL+ +RGTGFKLDVKGYN+VLKAC+MA+SLEI + LYHQMVHVD TEP+VRTY                  L ++MQ  G VP
Sbjct:   60 MGWEISDDLRDRHRNFHIDALARADRAMDAWHTCQENMQSGFRPGARTVQQVVCALARQRQYRMVPRFLELVRGTGFKLDVKGYNVVLKACTMAESLEITLNLYHQMVHVDRTEPDVRTYXXXXXXXCHYKDWRVALRLFAEMQQRGVVP 209          
BLAST of jgi.p|Trimin1|349604 vs. uniprot
Match: A0A835YRH7_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.270e-18
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 0
Query:   16 FHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMV 108
             ++ ALARA+RA DAWH C EY++AGF+P   TV  ++ A   +R   M LR L  +RG+G +L+V  Y I ++AC+ + S+E A+ LY QM+
Sbjct:    2 LYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 94          
BLAST of jgi.p|Trimin1|349604 vs. uniprot
Match: A0A835ZC76_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC76_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.470e-16
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0
Query:   76 GFKLDVKGYNIVLKACSMADSLEIAVELYHQMVHVDGTEPNVRTYDSLL 124
            G KLDV+GYN+VL ACSMA+SLEIA++LYHQMVHVD  EPNVRTYD LL
Sbjct:    1 GLKLDVQGYNVVLMACSMAESLEIALQLYHQMVHVDRREPNVRTYDCLL 49          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349604 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YUD4_9STRA5.820e-251100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVH2_9STRA5.180e-9968.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YS91_9STRA1.660e-5868.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRH7_9STRA2.270e-1845.16PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835ZC76_9STRA1.470e-1679.59Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036063Smr domain superfamilyGENE3D3.30.1370.110coord: 290..395
e-value: 1.2E-6
score: 30.5
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 311..395
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 80..125
e-value: 2.3E-7
score: 30.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 84..117
e-value: 2.2E-4
score: 19.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 13..284
e-value: 7.1E-17
score: 63.7
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 18..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:148954..150688 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349604mRNA_4570Tribonema minus UTEX_B_3156 mRNAContig_46 148954..150688 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349604|estExt_Genemark1.C_Ctg_460028 ID=Trimin1|349604|estExt_Genemark1.C_Ctg_460028|Name=jgi.p|Trimin1|349604|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=397bp
MGWEISDDERDRQRTFHIGALARANRATDAWHTCHEYMQAGFRPGARTVQ
QVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIA
VELYHQMVHVDGTEPNVRTYDSLLSDMQAAGAVPPLRAYGPVLMACIMTR
NDPRFRELTRELSHAEWASATELSNFYSRIVEGFVATGQLHAAVRILDGV
AAAGRLSSRIVLPVLVHYARVLRDVPAVRGIVDAMRVRGARLLLAAWDMA
IDTAWRAGDKRTATLNPYRLARPGVEPGRPMWTTETPAVAAAAAAAAPGP
EERAGAPRVTIMDFHYHSAGTAAVAVTLQLRNMRAQRQQGGAAAAAGHVL
YLITGLGHLRGKHKGKVRAAVTAQLERAELKYSAVPGNAGVLKVVY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036063Smr_dom_sf
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf