Trimin1|349600|estExt_Genemark1.C_Ctg_460017 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349600
Unique NameTrimin1|349600|estExt_Genemark1.C_Ctg_460017
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length178
Homology
BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: A0A835YT76_9STRA (DH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT76_9STRA)

HSP 1 Score: 331 bits (848), Expect = 2.160e-114
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query:    1 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR 177
            MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR
Sbjct:    1 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR 177          
BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: A0A835Z4U4_9STRA (DH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.440e-57
Identity = 110/134 (82.09%), Postives = 110/134 (82.09%), Query Frame = 0
Query:    1 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR 134
            MV TTGRLVFGGSGPA EQQDDDDKLQQL KEEGNRSKAVAELLSTEKTFVSEMT                     LLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR
Sbjct:    1 MVTTTGRLVFGGSGPA-EQQDDDDKLQQLAKEEGNRSKAVAELLSTEKTFVSEMT---------------------LLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR 112          
BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 8.660e-9
Identity = 63/201 (31.34%), Postives = 83/201 (41.29%), Query Frame = 0
Query:   33 EGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAG---KARLA--VTPEDLTVIFSNVEQLLGFNRSFLADLEAA----MAAGGQGAV-----------------------------------------------VEVFLKAAPFMRMFSVYVNNFDRAR 177
            E  R +AVAELLS+E  +VS++                      LLV+VFL PL+R+  EL A+ +   +  A  G   +AR A   T  D   IF+N  +L  FNR FL DL  A       G  G V                                               ++VFLK+APF++M+S YVNNFD AR
Sbjct:    7 ERRRDEAVAELLSSEAEYVSDLK---------------------LLVDVFLLPLQRWAKELEAQQDPVLDHAAVHGGSIQARSAPSFTQADCKEIFANTLELAHFNRQFLLDLRKAHGGPFVPGSVGVVSPVSTSTECNEWRKVTSAGRDCLEGEDIGDPLRPTSPNISEKGPRQMLQVFLKSAPFLKMYSEYVNNFDTAR 186          
BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: A0A835Z6E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.530e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:  114 VTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFD 174
            VT  +L  +FSN EQ+  FNR  L DLE A   GG  A+++  LKAAPF +M+  +V NF+
Sbjct:  172 VTRAELLSVFSNTEQIAAFNRQLLLDLERARRDGGNKAMLDQLLKAAPFFKMYGTFVRNFE 232          
BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: A0A4P9ZJB8_9FUNG (Dbl homology domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZJB8_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 8.780e-6
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 0
Query:  107 AGKARLAVTPEDLTVIFSNVEQLLGFNRS-FLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRA 176
            A K R  ++P ++  IF NV+ +L F+R   L +LE  +    +  V +VFL+ A F+R++SVYVNNFD A
Sbjct:  302 ATKFRGVLSPVEMKTIFGNVDTILMFHRDHILPELEQTIRDDAKARVGKVFLRNAAFIRIYSVYVNNFDHA 372          
BLAST of jgi.p|Trimin1|349600 vs. uniprot
Match: W7TL77_9STRA (Pleckstrin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL77_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.750e-5
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:   77 LLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRA 176
            +L + F++PLR + AE+A  AE+              +    L  IFSN+EQLL FN   + +  + +  G Q A    F KAAPF +M+S YV+N+DRA
Sbjct:   63 VLTKTFIKPLRYWNAEIAGNAESTHPP----------LPNSFLQEIFSNIEQLLIFN-GHVVEQFSELQRGSQ-AFGGFFKKAAPFFKMYSSYVSNYDRA 150          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349600 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YT76_9STRA2.160e-114100.00DH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A835Z4U4_9STRA1.440e-5782.09DH domain-containing protein (Fragment) n=1 Tax=Tr... [more]
D8LKY8_ECTSI8.660e-931.34Pleckstrin homology (PH) domain-containing protein... [more]
A0A835Z6E2_9STRA1.530e-847.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4P9ZJB8_9FUNG8.780e-642.25Dbl homology domain-containing protein n=1 Tax=Dim... [more]
W7TL77_9STRA1.750e-538.00Pleckstrin domain-containing protein n=2 Tax=Monod... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000219Dbl homology (DH) domainPFAMPF00621RhoGEFcoord: 40..176
e-value: 3.7E-12
score: 46.8
IPR000219Dbl homology (DH) domainPROSITEPS50010DH_2coord: 35..177
score: 14.994668
IPR035899Dbl homology (DH) domain superfamilyGENE3D1.20.900.10Dbl homology (DH) domaincoord: 13..177
e-value: 8.3E-23
score: 82.9
IPR035899Dbl homology (DH) domain superfamilySUPERFAMILY48065DBL homology domain (DH-domain)coord: 23..176
NoneNo IPR availablePANTHERPTHR12673FACIOGENITAL DYSPLASIA PROTEINcoord: 15..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:95813..99249 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349600mRNA_4561Tribonema minus UTEX_B_3156 mRNAContig_46 95641..99283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349600|estExt_Genemark1.C_Ctg_460017 ID=Trimin1|349600|estExt_Genemark1.C_Ctg_460017|Name=jgi.p|Trimin1|349600|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTF
VSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAA
AEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQG
AVVEVFLKAAPFMRMFSVYVNNFDRAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000219DH-domain
IPR035899DBL_dom_sf