Trimin1|166702|e_gw1.46.59.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|166702
Unique NameTrimin1|166702|e_gw1.46.59.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length59
Homology
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BLAST of jgi.p|Trimin1|166702 vs. uniprot
Match: A0A835YSB2_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.200e-40
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MLAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCPLCKSDFSKI 59
            MLAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCPLCKSDFSKI
Sbjct:    1 MLAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCPLCKSDFSKI 59
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BLAST of jgi.p|Trimin1|166702 vs. uniprot
Match: A0A8C4S9S6_ERPCA (RING-type domain-containing protein n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4S9S6_ERPCA)

HSP 1 Score: 47.0 bits (110), Expect = 4.940e-5
Identity = 20/56 (35.71%), Postives = 33/56 (58.93%), Query Frame = 0 
Query:    2 LAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCPLCKSDFS 57
            L++   TC +CLE+ +      CG+ FC+ CI+Q+ D +S+ +    CP C+  FS
Sbjct:    8 LSQDEFTCSVCLELLKDPASTACGHNFCLDCIQQYWDQNSN-MGVFNCPQCRQTFS 62
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166702 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YSB2_9STRA3.200e-40100.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A8C4S9S6_ERPCA4.940e-535.71RING-type domain-containing protein n=1 Tax=Erpeto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 9..52
e-value: 5.7E-5
score: 32.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 8..53
e-value: 4.2E-7
score: 30.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 9..53
score: 10.92546
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..59
e-value: 3.3E-11
score: 44.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 8..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:435897..436073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166702mRNA_4616Tribonema minus UTEX_B_3156 mRNAContig_46 435897..436073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|166702|e_gw1.46.59.1 ID=Trimin1|166702|e_gw1.46.59.1|Name=jgi.p|Trimin1|166702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
MLAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCP
LCKSDFSKI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD