mRNA_4616 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166702
Unique NamemRNA_4616
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166702 vs. uniprot
Match: A0A835YSB2_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.200e-40
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MLAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCPLCKSDFSKI 177
            MLAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCPLCKSDFSKI
Sbjct:    1 MLAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCPLCKSDFSKI 59
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BLAST of jgi.p|Trimin1|166702 vs. uniprot
Match: A0A8C4S9S6_ERPCA (RING-type domain-containing protein n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4S9S6_ERPCA)

HSP 1 Score: 47.0 bits (110), Expect = 4.940e-5
Identity = 20/56 (35.71%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    4 LAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCPLCKSDFS 171
            L++   TC +CLE+ +      CG+ FC+ CI+Q+ D +S+ +    CP C+  FS
Sbjct:    8 LSQDEFTCSVCLELLKDPASTACGHNFCLDCIQQYWDQNSN-MGVFNCPQCRQTFS 62
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YSB2_9STRA3.200e-40100.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A8C4S9S6_ERPCA4.940e-535.71RING-type domain-containing protein n=1 Tax=Erpeto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:435897..436073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166702|e_gw1.46.59.1
BRITEko00000,ko01000,ko04121
KEGG koko:K15687
EC2.3.2.27
Descriptionzinc finger
COG categoryO
Max annot lvl4751|Fungi
EggNOG OGsKOG1039@1|root,KOG1039@2759|Eukaryota,39S60@33154|Opisthokonta,3P5Q8@4751|Fungi,3V2M8@5204|Basidiomycota,228Z5@155619|Agaricomycetes
Evalue3.79e-07
Seed ortholog80637.XP_007770916.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId167024
TrackFilteredModels1
ProteinId166702
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166702gene_4616Tribonema minus UTEX_B_3156 geneContig_46 435897..436073 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4616_1exon_4616_1Tribonema minus UTEX_B_3156 exonContig_46 435897..436073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4616CDS_4616Tribonema minus UTEX_B_3156 CDSContig_46 435897..436073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166702Trimin1|166702|e_gw1.46.59.1Tribonema minus UTEX_B_3156 polypeptideContig_46 435897..436073 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4616 ID=mRNA_4616|Name=jgi.p|Trimin1|166702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_46:435897..436073+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCGGAGCAAGTTGAGACGTGCTGCATATGCCTGGAGGTCCCTCG
CCATGTGGGGGAGCTTGAATGCGGATACAAGTTCTGTGTGGGCTGCATCA
GACAATGGAAGGACACAGATAGTGATACTCTAAATTGCGCAAGATGTCCA
CTGTGCAAGAGTGACTTCTCAAAAATC
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protein sequence of jgi.p|Trimin1|166702

>Trimin1|166702|e_gw1.46.59.1 ID=Trimin1|166702|e_gw1.46.59.1|Name=jgi.p|Trimin1|166702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
MLAEQVETCCICLEVPRHVGELECGYKFCVGCIRQWKDTDSDTLNCARCP
LCKSDFSKI
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mRNA from alignment at Contig_46:435897..436073+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4616 ID=mRNA_4616|Name=jgi.p|Trimin1|166702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_46:435897..436073+ (Tribonema minus UTEX_B_3156 )
ATGCTCGCGGAGCAAGTTGAGACGTGCTGCATATGCCTGGAGGTCCCTCG
CCATGTGGGGGAGCTTGAATGCGGATACAAGTTCTGTGTGGGCTGCATCA
GACAATGGAAGGACACAGATAGTGATACTCTAAATTGCGCAAGATGTCCA
CTGTGCAAGAGTGACTTCTCAAAAATC
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Coding sequence (CDS) from alignment at Contig_46:435897..436073+

>mRNA_4616 ID=mRNA_4616|Name=jgi.p|Trimin1|166702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_46:435897..436073+ (Tribonema minus UTEX_B_3156 )
ATGCTCGCGGAGCAAGTTGAGACGTGCTGCATATGCCTGGAGGTCCCTCG
CCATGTGGGGGAGCTTGAATGCGGATACAAGTTCTGTGTGGGCTGCATCA
GACAATGGAAGGACACAGATAGTGATACTCTAAATTGCGCAAGATGTCCA
CTGTGCAAGAGTGACTTCTCAAAAATC
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