mRNA_4553 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137564
Unique NamemRNA_4553
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|137564 vs. uniprot
Match: A0A835YVE4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVE4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.270e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 FESLRRLDLRNNGLISVPNSLAISLPQLHELRLQDNAISCLPDNISDLM 147
            FESLRRLDLRNNGLISVPNSLAISLPQLHELRLQDNAISCLPDNISDLM
Sbjct:    1 FESLRRLDLRNNGLISVPNSLAISLPQLHELRLQDNAISCLPDNISDLM 49
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137564 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YVE4_9STRA2.270e-24100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:60410..61033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137564|gw1.46.48.1
Hectar predicted targeting categoryother localisation
TranscriptId137886
TrackFilteredModels1
ProteinId137564
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137564gene_4553Tribonema minus UTEX_B_3156 geneContig_46 60410..61033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137564Trimin1|137564|gw1.46.48.1Tribonema minus UTEX_B_3156 polypeptideContig_46 60410..61033 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4553_2exon_4553_2Tribonema minus UTEX_B_3156 exonContig_46 60410..60672 -
exon_4553_1exon_4553_1Tribonema minus UTEX_B_3156 exonContig_46 60901..61033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4553CDS_4553Tribonema minus UTEX_B_3156 CDSContig_46 60901..61033 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4553 ID=mRNA_4553|Name=jgi.p|Trimin1|137564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_46:60410..61033- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCGAAAGCCTTAGGCGGCTGGATCTACGTAACAATGGACTAATCAGTGT
GCCCAATAGCTTGGCGATCAGCCTGCCTCAGCTTCATGAGCTCAGGCTGC
AAGACAACGCAATTTCGTGCCTGCCAGACAACATCTCGGACCTGATGCAG
CTCAAGGTCCTGCTGCTGCAGCGCAACTGCCTGGAGGCTCTGCCGCCCGC
GCTGTACAGGCTCAAAGCCCTCGAGCAGCTGAACGTCGCCGCCAACAGCA
TCCGCGCCGTCAGCGCCGCGATCGAGGATCTGGCGCGGCTGACATCTCTG
GACCTCTCCGGCAACGCCCTGGCGGCGCTGCCCGAAACCATAGCGAACCT
CGCCGCGCTGCAGTTCTTCGACGCGTCCGACAACGAGGCAGCCGAT
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protein sequence of jgi.p|Trimin1|137564

>Trimin1|137564|gw1.46.48.1 ID=Trimin1|137564|gw1.46.48.1|Name=jgi.p|Trimin1|137564|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
FESLRRLDLRNNGLISVPNSLAISLPQLHELRLQDNAISCLPDNISDLMQ
LKVLLLQRNCLEALPPALYRLKALEQLNVAANSIRAVSAAIEDLARLTSL
DLSGNALAALPETIANLAALQFFDASDNEAAD
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mRNA from alignment at Contig_46:60410..61033-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4553 ID=mRNA_4553|Name=jgi.p|Trimin1|137564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_46:60410..61033- (Tribonema minus UTEX_B_3156 )
TTCGAAAGCCTTAGGCGGCTGGATCTACGTAACAATGGACTAATCAGTGT
GCCCAATAGCTTGGCGATCAGCCTGCCTCAGCTTCATGAGCTCAGGCTGC
AAGACAACGCAATTTCGTGCCTGCCAGACAACAGTGAGTTTGCTGCGCGG
CGACGTGCACAGCCCGACACACAAGCTAATGCCTGGGGTGGCTGGCCCAA
GCCTTGATCTGGGAACCTGCTTTACGATACACCCTTTGTTATTCAACAAG
CTGTAACGCATGCTTGTTTGCTACCACACGAAAATCTAGAAAGACATAAT
CAGCCATCACTGAATGCCTCCCCCACATGTTGGATCGCTTCAATGCTCCG
TCGCGCCGCAGTCTCGGACCTGATGCAGCTCAAGGTCCTGCTGCTGCAGC
GCAACTGCCTGGAGGCTCTGCCGCCCGCGCTGTACAGGCTCAAAGCCCTC
GAGCAGCTGAACGTCGCCGCCAACAGCATCCGCGCCGTCAGCGCCGCGAT
CGAGGATCTGGCGCGGCTGACATCTCTGGACCTCTCCGGCAACGCCCTGG
CGGCGCTGCCCGAAACCATAGCGAACCTCGCCGCGCTGCAGTTCTTCGAC
GCGTCCGACAACGAGGCAGCCGAT
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Coding sequence (CDS) from alignment at Contig_46:60410..61033-

>mRNA_4553 ID=mRNA_4553|Name=jgi.p|Trimin1|137564|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_46:60410..61033- (Tribonema minus UTEX_B_3156 )
TTCGAAAGCCTTAGGCGGCTGGATCTACGTAACAATGGACTAATCAGTGT
GCCCAATAGCTTGGCGATCAGCCTGCCTCAGCTTCATGAGCTCAGGCTGC
AAGACAACGCAATTTCGTGCCTGCCAGACAACATCTCGGACCTGATGCAG
CTCAAGGTCCTGCTGCTGCAGCGCAACTGCCTGGAGGCTCTGCCGCCCGC
GCTGTACAGGCTCAAAGCCCTCGAGCAGCTGAACGTCGCCGCCAACAGCA
TCCGCGCCGTCAGCGCCGCGATCGAGGATCTGGCGCGGCTGACATCTCTG
GACCTCTCCGGCAACGCCCTGGCGGCGCTGCCCGAAACCATAGCGAACCT
CGCCGCGCTGCAGTTCTTCGACGCGTCCGACAACGAGGCAGCCGAT
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