mRNA_4672 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|69847
Unique NamemRNA_4672
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|69847 vs. uniprot
Match: A0A835YRP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP2_9STRA)

HSP 1 Score: 228 bits (580), Expect = 2.060e-71
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 2 
Query:   35 MRSRSCALRVLGLLLVPLALCDAAAXXXXXXXXXGAAPNFTISPTLPQPPPNLDQLTDKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLAAIALLGAGGLLYRKSRAGGGAANKGVPDPVDRLEMGPRDRPVERPGPVRAPGMSRARSNFPQGGGAPQSTVN 565
            MRSRSCALRVLGLLLVPLALCDAAAXXXXXXXXXGAAPNFTISPTLPQPPPNLDQLTDKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLAAIALLGAGGLLYRKSRAGGGAANKGVPDPVDRLEMGPRDRPVERPGPVRAPGMSRARSNFPQGGGAPQSTVN
Sbjct:    1 MRSRSCALRVLGLLLVPLALCDAAAXXXXXXXXXGAAPNFTISPTLPQPPPNLDQLTDKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLAAIALLGAGGLLYRKSRAGGGAANKGVPDPVDRLEMGPRDRPVERPGPVRAPGMSRARSNFPQGGGAPQSTVN 177
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|69847 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YRP2_9STRA2.060e-71100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:735627..737433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|69847|CE69846_119
Hectar predicted targeting categorysignal peptide
TranscriptId70169
TrackFilteredModels1
ProteinId69847
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|69847gene_4672Tribonema minus UTEX_B_3156 geneContig_46 735627..737433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4672_2exon_4672_2Tribonema minus UTEX_B_3156 exonContig_46 735627..736479 -
exon_4672_1exon_4672_1Tribonema minus UTEX_B_3156 exonContig_46 737338..737433 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4672UTR3_4672Tribonema minus UTEX_B_3156 three_prime_UTRContig_46 735627..736007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4672CDS_4672Tribonema minus UTEX_B_3156 CDSContig_46 737338..737399 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4672UTR5_4672Tribonema minus UTEX_B_3156 five_prime_UTRContig_46 737400..737433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|69847Trimin1|69847|CE69846_119Tribonema minus UTEX_B_3156 polypeptideContig_46 736008..737399 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4672 ID=mRNA_4672|Name=jgi.p|Trimin1|69847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=949bp|location=Sequence derived from alignment at Contig_46:735627..737433- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTAGTCATAGGAGGTCGGCAGCAGCAGCCTGGAAATGAGATCGAGATCCT
GTGCTCTGCGGGTGCTGGGACTGCTCCTGGTTCCATTGGCGCTCTGCGAC
GCGGCGGCGAGCACCACCACCACCAGCAGCGCCGCCGGCGCCGCGCCCAA
CTTCACCATCTCCCCGACGCTGCCGCAGCCGCCGCCCAACCTCGACCAGC
TCACCGACAAGCCCACGCCGCGGCCGACGCCGCGCCCGACCGCCGCCGCC
GCAGAGCCCACCGCGCCCCCCACGCAAGAAGTCAAGAGCAGCGGCGGCGG
CGGCTCCAACGGGGCGACGATAGGCATCGCGGTGGGCGTGTCGCTCGCCG
CCATCGCGCTGCTCGGCGCGGGGGGGCTGCTGTACCGCAAGTCGCGCGCC
GGCGGCGGCGCCGCGAATAAGGGCGTGCCGGACCCCGTAGACCGGCTCGA
GATGGGGCCGCGGGACAGGCCGGTGGAGCGGCCGGGGCCGGTGCGCGCGC
CGGGCATGTCGCGCGCGCGCTCCAACTTCCCGCAGGGGGGCGGCGCCCCC
CAGTCCACCGTAAATTAGGTAGCTGCCGCGGCGGCGACGGACGGGCGCCA
AGTGCTATTATACTGTGCAGCTACGGTGGACCGGCGACGGACGCCAAATG
CTATTATACTGTGCAGCTGCGGTGGGGGCGGCGGCGGCGGCGGCAACGGG
CGGCGATTGATTCCACAGGTACTCTCTTCTTTTCGGTGTGTTGCGGCGGC
GGCGGGCGGCGATCCCCGCAGGTGTTCTTTTCGGTGTGTTGTGAGTCAAC
TCGTGGCTTTTGGGAGGGGGGGGGCGCCCCCGGGGGAAGGTTTCAGACAT
TACTGCATAGTGCCCAGACTGTCTCCCCTGTACTTTACCCGCTCCTCCAT
TGTGATCGGAGGGGCTCGGAAATGAAAGTGCTCGTCATGTGAAAGCGAT
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protein sequence of jgi.p|Trimin1|69847

>Trimin1|69847|CE69846_119 ID=Trimin1|69847|CE69846_119|Name=jgi.p|Trimin1|69847|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MRSRSCALRVLGLLLVPLALCDAAASTTTTSSAAGAAPNFTISPTLPQPP
PNLDQLTDKPTPRPTPRPTAAAAEPTAPPTQEVKSSGGGGSNGATIGIAV
GVSLAAIALLGAGGLLYRKSRAGGGAANKGVPDPVDRLEMGPRDRPVERP
GPVRAPGMSRARSNFPQGGGAPQSTVN*
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mRNA from alignment at Contig_46:735627..737433-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4672 ID=mRNA_4672|Name=jgi.p|Trimin1|69847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1807bp|location=Sequence derived from alignment at Contig_46:735627..737433- (Tribonema minus UTEX_B_3156 )
GTAGTCATAGGAGGTCGGCAGCAGCAGCCTGGAAATGAGATCGAGATCCT
GTGCTCTGCGGGTGCTGGGACTGCTCCTGGTTCCATTGGCGCTCTGGTGA
GACTTTCTTGCGGCGTTGCGTTCGCGCTGCTCTTGACTCCGCCGGCCCCC
GCACGTACACTGCTAGCTCGACATGATGATGTAGCGCTGCATGCTCCTCG
ACCACTCAAGATGAGGGGCGGAGTTGATCCGTGCGCTTTACTCATGCTTA
ACCCCCGCCAACTGGCCCCCGGCTCATCCGCTGAGGGCGTGTCCAGCGCG
ATCTTGATGGCACAGTTGGCCGCACCGTCAATCAATGTTTCAATTTGGCG
GGCTAGCTTGCTTCCTCTGCGGAAAACGCTTACTGTATCCACTCTGTCTT
GCTGCGCCTGACCGTGCTGATTACCTTTCAACACGAACCATCGGGCACCA
TGCACATCCCTAATACGTTAGGTGAACATGCTCTCAGTCGGCTCCATCGC
TTCGCGTGGTGCACGTCGTTCAGCTGGCTCATCTTTGCTTCTCCAGGCGT
CGTATCTGCACCTGCGGAGTCACTGGGGTCTTGCCGTGACTACTGTGGCC
ACCTCTATCGTTGACATGCTTTCTTGAAGCACACGACTTTCACAGTAAAA
CATATACCTCAAATTTTCAAGTACTTGTGCACAGCATAGACAGCGGCGCA
TTCGACTTCCGGCACGAACAAGTCGTTCTGACGCCAGTTTCAGATGGACT
GGCGCTTGATAATGGATGTTCACCATGAAAAGTGATGTTCACCTGAAGAT
TGACCCAAGTTGAAGTATTACTACCGCCTGTGCTCACTCGACGCTGCCAC
GGCCAATCGATCGCGCTGGCGAGCCTCGCTGACCCGCACACCACATCAAC
TACCTCTCATACGTCTCTGCCTGCACTGCTGACCCGGCCGCCCACAACGC
GCAGCGACGCGGCGGCGAGCACCACCACCACCAGCAGCGCCGCCGGCGCC
GCGCCCAACTTCACCATCTCCCCGACGCTGCCGCAGCCGCCGCCCAACCT
CGACCAGCTCACCGACAAGCCCACGCCGCGGCCGACGCCGCGCCCGACCG
CCGCCGCCGCAGAGCCCACCGCGCCCCCCACGCAAGAAGTCAAGAGCAGC
GGCGGCGGCGGCTCCAACGGGGCGACGATAGGCATCGCGGTGGGCGTGTC
GCTCGCCGCCATCGCGCTGCTCGGCGCGGGGGGGCTGCTGTACCGCAAGT
CGCGCGCCGGCGGCGGCGCCGCGAATAAGGGCGTGCCGGACCCCGTAGAC
CGGCTCGAGATGGGGCCGCGGGACAGGCCGGTGGAGCGGCCGGGGCCGGT
GCGCGCGCCGGGCATGTCGCGCGCGCGCTCCAACTTCCCGCAGGGGGGCG
GCGCCCCCCAGTCCACCGTAAATTAGGTAGCTGCCGCGGCGGCGACGGAC
GGGCGCCAAGTGCTATTATACTGTGCAGCTACGGTGGACCGGCGACGGAC
GCCAAATGCTATTATACTGTGCAGCTGCGGTGGGGGCGGCGGCGGCGGCG
GCAACGGGCGGCGATTGATTCCACAGGTACTCTCTTCTTTTCGGTGTGTT
GCGGCGGCGGCGGGCGGCGATCCCCGCAGGTGTTCTTTTCGGTGTGTTGT
GAGTCAACTCGTGGCTTTTGGGAGGGGGGGGGCGCCCCCGGGGGAAGGTT
TCAGACATTACTGCATAGTGCCCAGACTGTCTCCCCTGTACTTTACCCGC
TCCTCCATTGTGATCGGAGGGGCTCGGAAATGAAAGTGCTCGTCATGTGA
AAGCGAT
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Coding sequence (CDS) from alignment at Contig_46:735627..737433-

>mRNA_4672 ID=mRNA_4672|Name=jgi.p|Trimin1|69847|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=534bp|location=Sequence derived from alignment at Contig_46:735627..737433- (Tribonema minus UTEX_B_3156 )
ATGAGATCGAGATCCTGTGCTCTGCGGGTGCTGGGACTGCTCCTGGTTCC
ATTGGCGCTCTGCGACGCGGCGGCGAGCACCACCACCACCAGCAGCGCCG
CCGGCGCCGCGCCCAACTTCACCATCTCCCCGACGCTGCCGCAGCCGCCG
CCCAACCTCGACCAGCTCACCGACAAGCCCACGCCGCGGCCGACGCCGCG
CCCGACCGCCGCCGCCGCAGAGCCCACCGCGCCCCCCACGCAAGAAGTCA
AGAGCAGCGGCGGCGGCGGCTCCAACGGGGCGACGATAGGCATCGCGGTG
GGCGTGTCGCTCGCCGCCATCGCGCTGCTCGGCGCGGGGGGGCTGCTGTA
CCGCAAGTCGCGCGCCGGCGGCGGCGCCGCGAATAAGGGCGTGCCGGACC
CCGTAGACCGGCTCGAGATGGGGCCGCGGGACAGGCCGGTGGAGCGGCCG
GGGCCGGTGCGCGCGCCGGGCATGTCGCGCGCGCGCTCCAACTTCCCGCA
GGGGGGCGGCGCCCCCCAGTCCACCGTAAATTAG
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