mRNA_4579 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|69462
Unique Name	mRNA_4579
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|69462 vs. uniprot
Match: A0A835YRI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRI8_9STRA)

HSP 1 Score: 311 bits (798), Expect = 5.010e-105
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1

Query:  145 MLGNRTYRSCCCVQRQHNSDVLRNSTRGLAQSKKALEXXXXXXXXXXXXXXXXXXXXXXXXXXSTTDKLLSRMVNAPFRPPNYTPEERAYHFEIGRAYTRNLMLRHNAQQEDMAWKLALRDQALAALPPGLRAHASSIDDAPFPLERRIALWTAPIPNFDAAYYRRKLQRELDSKAQEEKRAQGLL 702
            MLGNRTYRSCCCVQRQHNSDVLRNSTRGLAQSKKALEXXXXXXXXXXXXXXXXXXXXXXXXXXSTTDKLLSRMVNAPFRPPNYTPEERAYHFEIGRAYTRNLMLRHNAQQEDMAWKLALRDQALAALPPGLRAHASSIDDAPFPLERRIALWTAPIPNFDAAYYRRKLQRELDSKAQEEKRAQGLL
Sbjct:    1 MLGNRTYRSCCCVQRQHNSDVLRNSTRGLAQSKKALEXXXXXXXXXXXXXXXXXXXXXXXXXXSTTDKLLSRMVNAPFRPPNYTPEERAYHFEIGRAYTRNLMLRHNAQQEDMAWKLALRDQALAALPPGLRAHASSIDDAPFPLERRIALWTAPIPNFDAAYYRRKLQRELDSKAQEEKRAQGLL 186

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|69462 vs. uniprot

BLAST of jgi.p|Trimin1|69462 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YRI8_9STRA	5.010e-105	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_46	contig	Contig_46:218203..220221 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|69462\|CE69461_161
Max annot lvl	4776\|Peronosporales
EggNOG OGs	2D19J@1\|root,2S4VG@2759\|Eukaryota,3QFPS@4776\|Peronosporales
Evalue	4.21e-13
Seed ortholog	272952.HpaP809700
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Ribosomal protein L28/L40, mitochondrial
Ec32 ortholog	Ec-07_001600.1
TranscriptId	69784
Track	FilteredModels1
ProteinId	69462

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|69462	gene_4579	Tribonema minus UTEX_B_3156	gene	Contig_46 218203..220221 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4579_1	exon_4579_1	Tribonema minus UTEX_B_3156	exon	Contig_46 218203..218501 +
exon_4579_2	exon_4579_2	Tribonema minus UTEX_B_3156	exon	Contig_46 219702..220221 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_4579	UTR5_4579	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_46 218203..218346 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4579	CDS_4579	Tribonema minus UTEX_B_3156	CDS	Contig_46 218347..218501 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_4579	UTR3_4579	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_46 220108..220221 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|69462	Trimin1\|69462\|CE69461_161	Tribonema minus UTEX_B_3156	polypeptide	Contig_46 218347..220107 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_46:218203..220221+
coding sequence from alignment at Contig_46:218203..220221+

spliced messenger RNA

>mRNA_4579 ID=mRNA_4579|Name=jgi.p|Trimin1|69462|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_46:218203..220221+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGACCTGGTGCTACCTGAGCTCTTGAAACGAGTTGCAAGACCGACGACG
ACGTTGTGCTGGTGGCAGTTGCTCACAATCCGCTTCTGGCCAGTTTCTGT
CGCACGACGGTACTGTGCACACTGGCTGAAGACTGGAGCTGCAGATGCTT
GGGAACAGGACATATCGCAGCTGCTGCTGTGTGCAGCGACAACACAACAG
TGATGTCTTACGCAACAGCACAAGAGGACTTGCTCAGAGTAAAAAAGCCT
TGGAGGAGAAGAAGGCGGCTGGTTCGACTCGCAAGTCGCCATCGTCCAAG
GGCGGCGGCAAGGCGAGCAAGCAGGAGGAGCGCAGCACCACGGACAAGCT
GCTGTCGCGCATGGTGAACGCGCCGTTCCGGCCGCCCAACTACACGCCGG
AGGAGCGCGCGTACCACTTCGAGATCGGCCGCGCGTACACGCGCAACCTG
ATGCTGCGGCACAACGCTCAGCAGGAGGACATGGCGTGGAAGCTGGCGCT
GCGCGACCAGGCGCTCGCCGCGCTGCCGCCCGGCCTGCGCGCGCACGCGA
GCTCCATCGACGACGCGCCGTTCCCGCTGGAGCGGCGCATCGCGCTGTGG
ACGGCGCCGATACCGAACTTCGACGCGGCGTACTACCGGCGCAAGCTGCA
GCGCGAGCTCGACTCCAAGGCGCAGGAGGAGAAACGCGCGCAGGGGCTCT
TGTAGCGGCGGCTGCGCGTAGGGGTATTCAGGGGTATAGTGGTATGGTAC
GTAGGTAGGGGAGCGGGACGCGCTGTAGCGCTGTGTGTGGCGCACAACAA
CAACAATGCGTTGGTCACA

protein sequence of jgi.p|Trimin1|69462

>Trimin1|69462|CE69461_161 ID=Trimin1|69462|CE69461_161|Name=jgi.p|Trimin1|69462|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp
MLGNRTYRSCCCVQRQHNSDVLRNSTRGLAQSKKALEEKKAAGSTRKSPS
SKGGGKASKQEERSTTDKLLSRMVNAPFRPPNYTPEERAYHFEIGRAYTR
NLMLRHNAQQEDMAWKLALRDQALAALPPGLRAHASSIDDAPFPLERRIA
LWTAPIPNFDAAYYRRKLQRELDSKAQEEKRAQGLL*

mRNA from alignment at Contig_46:218203..220221+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4579 ID=mRNA_4579|Name=jgi.p|Trimin1|69462|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2019bp|location=Sequence derived from alignment at Contig_46:218203..220221+ (Tribonema minus UTEX_B_3156 )
GTGACCTGGTGCTACCTGAGCTCTTGAAACGAGTTGCAAGACCGACGACG
ACGTTGTGCTGGTGGCAGTTGCTCACAATCCGCTTCTGGCCAGTTTCTGT
CGCACGACGGTACTGTGCACACTGGCTGAAGACTGGAGCTGCAGATGCTT
GGGAACAGGACATATCGCAGCTGCTGCTGTGTGCAGCGACAACACAACAG
TGATGTCTTACGCAACAGCACAAGAGGACTTGCTCAGAGTAAAAAAGCCT
TGGAGGAGAAGAAGGCGGCTGGTTCGACTCGCAAGTCGCCATCGTCCAAG
TGAGTTTTGCGCTAACTTGGCACGTAACAGTGCTTTGGGGCCCGCTAGGA
TGCTGTTTGACATTGTGGGTTTGAGGTGTGAAGTGCAGATGCTTTTTACA
GATGGCAAGTGTCCCAAGCGTGCCAGACAAACTTCAACATCGTGCATGAC
AGCTGCTGAGGTGCTGCTGCTGCTGTCATTGGTGTTGACAGATGCATTGG
GCATCCGAACGCTTGCGGGATGGTTCAATGATTCTTTGCTGAGGACCCTG
TACGTGGATTATTGAATGTGATCCTGGACCCTCCGGAATTGCGTCAGTGC
CGCAGCCAAAACTCACAGCATTGGAATAAGACCTTAACATACCCGGAGGT
CATTTGCAGCGGCTCCTGACATTGCACTTTGACATTTCTGCATCGCATCA
CCACCTTCATGAAACTTCAACCACTGCAAATGCCACGTATTGCTAATCAC
ATGTTTTTTCAACATGAACCGGATGGTATAGGGTGAACAGCCTCATGCTT
TTGGCTATCACAGCGGCTTGTACGGCAGATGCGATTATTGTTTACAGGGT
AATGCCTACCAAGTAGGGATTGGTGCTGGCACATATAGACGCTCGACAAA
GTGGGCTTGGCTCAGCACCCAGCCTGTTTACTAGGCACCTGTTGTTTAAC
AGCGCGGTTCTCGTAGCTTTGCTCTACGAGCATCTGACCTGGCAGCAAAG
GACAAAGTCCTGCTGCTGCAAAGTTGTCATCTGCATCATATAGTAGGGCT
TAAGGCGGCCATCCTGCTTCGCTCAAATACCCGGGTGTTCCATTACAGGG
GGGCAGCTTACCGCCAGACTCGGCGGCTGTCGTTTACAGCTGATAGAATC
AATCACAAGTGCCGTCAATCGCTCCTGGTGCCACCATCTGGACGTACTCA
CATGGCATCACAAGCATACGCGATTTGCCAGCCGTTTCGCAAAAATGCCT
TACCATCGCAACCCTGCATCTCAGCCCGTGCTTCTTGTGATAACTTGTAC
TTCAAGTACACAGTCACCAATCATCAACTACTCGCATGAACGGCCACGGT
CGCGCATGAATCGCTGGCACACGCGCTTTCGTAGAGCGTACTGCGGCATC
GCAGCAGCAGCACCAGCTGCAGCAGCAGCATCCCTCGTCAGCCGCGTCAC
TCATTTTTCCGCACGCGCGCCGTTTCGCACCGCGCGCGCGCGCGCGCAGG
GGCGGCGGCAAGGCGAGCAAGCAGGAGGAGCGCAGCACCACGGACAAGCT
GCTGTCGCGCATGGTGAACGCGCCGTTCCGGCCGCCCAACTACACGCCGG
AGGAGCGCGCGTACCACTTCGAGATCGGCCGCGCGTACACGCGCAACCTG
ATGCTGCGGCACAACGCTCAGCAGGAGGACATGGCGTGGAAGCTGGCGCT
GCGCGACCAGGCGCTCGCCGCGCTGCCGCCCGGCCTGCGCGCGCACGCGA
GCTCCATCGACGACGCGCCGTTCCCGCTGGAGCGGCGCATCGCGCTGTGG
ACGGCGCCGATACCGAACTTCGACGCGGCGTACTACCGGCGCAAGCTGCA
GCGCGAGCTCGACTCCAAGGCGCAGGAGGAGAAACGCGCGCAGGGGCTCT
TGTAGCGGCGGCTGCGCGTAGGGGTATTCAGGGGTATAGTGGTATGGTAC
GTAGGTAGGGGAGCGGGACGCGCTGTAGCGCTGTGTGTGGCGCACAACAA
CAACAATGCGTTGGTCACA

Coding sequence (CDS) from alignment at Contig_46:218203..220221+

>mRNA_4579 ID=mRNA_4579|Name=jgi.p|Trimin1|69462|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_46:218203..220221+ (Tribonema minus UTEX_B_3156 )
ATGCTTGGGAACAGGACATATCGCAGCTGCTGCTGTGTGCAGCGACAACA
CAACAGTGATGTCTTACGCAACAGCACAAGAGGACTTGCTCAGAGTAAAA
AAGCCTTGGAGGAGAAGAAGGCGGCTGGTTCGACTCGCAAGTCGCCATCG
TCCAAGGGCGGCGGCAAGGCGAGCAAGCAGGAGGAGCGCAGCACCACGGA
CAAGCTGCTGTCGCGCATGGTGAACGCGCCGTTCCGGCCGCCCAACTACA
CGCCGGAGGAGCGCGCGTACCACTTCGAGATCGGCCGCGCGTACACGCGC
AACCTGATGCTGCGGCACAACGCTCAGCAGGAGGACATGGCGTGGAAGCT
GGCGCTGCGCGACCAGGCGCTCGCCGCGCTGCCGCCCGGCCTGCGCGCGC
ACGCGAGCTCCATCGACGACGCGCCGTTCCCGCTGGAGCGGCGCATCGCG
CTGTGGACGGCGCCGATACCGAACTTCGACGCGGCGTACTACCGGCGCAA
GCTGCAGCGCGAGCTCGACTCCAAGGCGCAGGAGGAGAAACGCGCGCAGG
GGCTCTTGTAG