mRNA_18663 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143123
Unique NamemRNA_18663
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A0A835YRR1_9STRA (Nucleotide-diphospho-sugar transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR1_9STRA)

HSP 1 Score: 260 bits (664), Expect = 4.770e-88
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query:    1 LVTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG 375
            LVTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG
Sbjct:    1 LVTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG 125          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A0A1V3RU95_9BURK (Glyco_trans_2-like domain-containing protein n=3 Tax=Hydrogenophaga TaxID=47420 RepID=A0A1V3RU95_9BURK)

HSP 1 Score: 141 bits (355), Expect = 7.400e-39
Identity = 59/111 (53.15%), Postives = 83/111 (74.77%), Query Frame = 1
Query:   22 VYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPY 354
            +YN E+ +   ++ +L QTY+N+E+V+SDN STD +A ICQ+Y  +D R+RYVRQE+N+G H N+ ++ D AQG +FMWAA+DD W+PEFI  L   L++ PEA  AFCPY
Sbjct:    1 MYNGEESLARTLDCLLGQTYQNIELVLSDNASTDATAQICQKYCAQDNRIRYVRQEKNLGLHGNWTFVADQAQGEFFMWAAADDYWEPEFIEVLVKKLQAEPEAISAFCPY 111          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A7NNL2_ROSCS (Glycosyl transferase family 2 n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) TaxID=383372 RepID=A7NNL2_ROSCS)

HSP 1 Score: 140 bits (354), Expect = 1.150e-38
Identity = 67/125 (53.60%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 LVTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG 375
            +VTVG+PVYN E+Y+  AIE ILAQ + +LE++ISDNGSTDG+ADIC RYA +D RVRYVR ERN+G   N+  L+D A+G YF W A DD   P+ I      LE  P   + + P + IDE G
Sbjct:   11 IVTVGVPVYNGERYLARAIESILAQRFADLEVIISDNGSTDGTADICHRYAQQDRRVRYVRNERNMGAAFNYNRLVDLARGRYFKWMAHDDLCAPDLIGACIAILEREPAVVLCYAPTTFIDETG 135          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A0A7W1FZW5_9BACT (Glycosyltransferase family 2 protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7W1FZW5_9BACT)

HSP 1 Score: 137 bits (346), Expect = 1.720e-37
Identity = 61/123 (49.59%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    7 TVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG 375
            T+G+PVYND +++  ++E IL QT++N E++ISD+G+TDGS  ICQ+YA KD R++Y+RQ +N+G   N  +L   A   YFMWA  DD   P FI +L  SLE+ P A  AFC ++ IDE G
Sbjct:   11 TIGMPVYNDVRFIQQSLESILNQTFQNFELIISDDGATDGSELICQKYAKKDLRIKYIRQPKNLGISKNMEFLYAQANKKYFMWAGDDDLIAPTFIEKLINSLENNPNAISAFCTFNTIDENG 133          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A0A1V4CFK5_9BURK (Glyco_trans_2-like domain-containing protein n=6 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1V4CFK5_9BURK)

HSP 1 Score: 135 bits (340), Expect = 1.320e-36
Identity = 55/111 (49.55%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   22 VYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPY 354
            +YN EK +   ++ +L QTYRN+E+++SDN STD +A ICQ+Y  +D R+RYVRQE+N+G   N+ ++ + A G +FMWAA+DD W+PEF+  L   L + P+A +AFCPY
Sbjct:    1 MYNGEKSLARTLDCLLGQTYRNIELILSDNASTDATAQICQKYCAQDPRIRYVRQEKNLGLPGNWTFVAEQATGEFFMWAAADDHWEPEFVEVLLNKLLAEPDAILAFCPY 111          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A0A352Z4P7_9DELT (Glyco_trans_2-like domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A352Z4P7_9DELT)

HSP 1 Score: 134 bits (338), Expect = 2.880e-36
Identity = 58/125 (46.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 LVTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG 375
            LV++G+PVYN EKY+  A++ +LAQ + + E++ISDN S D +A+IC++Y  KD R++Y R E NIG  ANF  L+++A   YFMWA+ DD W+P +++RL   LES     + F  +  IDE G
Sbjct:    7 LVSIGLPVYNGEKYIRQALDSLLAQDFEDFELIISDNASEDATAEICKQYLEKDDRIKYYRNEINIGGVANFNKLIEYANATYFMWASHDDIWEPFYVSRLVKRLESHESIVLVFSDFDNIDEDG 131          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A0A7C1EW81_9CHLR (Glycosyltransferase family 2 protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1EW81_9CHLR)

HSP 1 Score: 135 bits (339), Expect = 4.090e-36
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    4 VTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG 375
            V++G+PVYN E+Y+  A++  LAQT+R+ E++ISDN STD +  IC+ YA +DAR+RY RQ  N+G   N+  L D AQGVYF WAA DD + P F+ +    LE  PE TVA+     IDE G
Sbjct:    8 VSIGVPVYNGERYLAEALDAALAQTFRDFELIISDNASTDRTEAICRDYAARDARIRYYRQPTNLGATQNYNRLFDLAQGVYFKWAAYDDLYSPNFLEQAVAVLEQNPEVTVAYGKSYRIDEHG 131          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A0A656HDD6_THINJ (Glycosyl transferase family 2 n=1 Tax=Thiothrix nivea (strain ATCC 35100 / DSM 5205 / JP2) TaxID=870187 RepID=A0A656HDD6_THINJ)

HSP 1 Score: 134 bits (336), Expect = 4.990e-36
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 LVTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG 375
            LV++G+PVYN E  +   +E +LAQT+ + EI+ISDNGSTDG+  +C++YA  DAR+RY+RQ RN+G   NF +++  A+G YFMW ASDD  + EF+ +L   LE  PE  +       I E G
Sbjct:    8 LVSIGLPVYNREALIPKTLESLLAQTFTDFEIIISDNGSTDGTEAVCRQYAANDARIRYIRQPRNLGLLGNFNFVMKEARGKYFMWTASDDMCEKEFVGKLVEQLERDPELALVMADLKYISESG 132          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: A0A076MIP8_AMYME (Glycosyl transferase n=6 Tax=Amycolatopsis TaxID=1813 RepID=A0A076MIP8_AMYME)

HSP 1 Score: 133 bits (335), Expect = 5.210e-36
Identity = 57/123 (46.34%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    7 TVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEIDEQG 375
            ++G+PVYN E YV  A++++LAQT+ + E++ISDN STDG+ +IC++YA KD R+RY+RQ RNIG   N  +++  A+G +F WAA DD + PE +A+   +L+  PEA +A    + +DE+G
Sbjct:    8 SIGLPVYNGENYVAEAVDNLLAQTFADFELIISDNASTDGTQEICEKYASKDERIRYLRQPRNIGAAPNHNFVVQAARGEFFKWAAHDDLFAPELLAKCVQALDRHPEAALAHSYMAIVDERG 130          
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Match: UPI001CFF12E7 (glycosyltransferase n=1 Tax=Roseicella sp. GB24 TaxID=2883479 RepID=UPI001CFF12E7)

HSP 1 Score: 134 bits (336), Expect = 1.120e-35
Identity = 60/122 (49.18%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 LVTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRYAGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIARLAGSLESRPEATVAFCPYSEID 366
            LV++G+PV+N E YVG AIE +L QTY  LE++I DN STDG+  IC+ +A +DARVRY R  RN+G  AN+    + A+G YF W A DDR  PE++A+   +LE+ P+A +     +EID
Sbjct:   16 LVSIGLPVFNGEAYVGQAIESVLQQTYPCLELIIHDNASTDGTEQICRSFAAQDARVRYFRNPRNLGAAANYNLCFEQARGTYFKWTAHDDRMAPEYLAKAVAALEAAPDAVLCTVGITEID 137          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143123 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRR1_9STRA4.770e-88100.00Nucleotide-diphospho-sugar transferase (Fragment) ... [more]
A0A1V3RU95_9BURK7.400e-3953.15Glyco_trans_2-like domain-containing protein n=3 T... [more]
A7NNL2_ROSCS1.150e-3853.60Glycosyl transferase family 2 n=1 Tax=Roseiflexus ... [more]
A0A7W1FZW5_9BACT1.720e-3749.59Glycosyltransferase family 2 protein n=1 Tax=Bacte... [more]
A0A1V4CFK5_9BURK1.320e-3649.55Glyco_trans_2-like domain-containing protein n=6 T... [more]
A0A352Z4P7_9DELT2.880e-3646.40Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A7C1EW81_9CHLR4.090e-3650.00Glycosyltransferase family 2 protein n=1 Tax=Chlor... [more]
A0A656HDD6_THINJ4.990e-3647.20Glycosyl transferase family 2 n=1 Tax=Thiothrix ni... [more]
A0A076MIP8_AMYME5.210e-3646.34Glycosyl transferase n=6 Tax=Amycolatopsis TaxID=1... [more]
UPI001CFF12E71.120e-3549.18glycosyltransferase n=1 Tax=Roseicella sp. GB24 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_459contigContig_459:12112..12486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143123|gw1.459.11.1
DescriptionPFAM glycosyl transferase family 2
COG categoryS
Max annot lvl32061|Chloroflexia
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,2GB2A@200795|Chloroflexi,377SM@32061|Chloroflexia
Evalue1.88e-39
Seed ortholog383372.Rcas_3099
Hectar predicted targeting categoryother localisation
TranscriptId143445
TrackFilteredModels1
ProteinId143123
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143123gene_18663Tribonema minus UTEX_B_3156 geneContig_459 12112..12486 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18663_1exon_18663_1Tribonema minus UTEX_B_3156 exonContig_459 12112..12486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18663CDS_18663Tribonema minus UTEX_B_3156 CDSContig_459 12112..12486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143123Trimin1|143123|gw1.459.11.1Tribonema minus UTEX_B_3156 polypeptideContig_459 12112..12486 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18663 ID=mRNA_18663|Name=jgi.p|Trimin1|143123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_459:12112..12486- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGTGACAGTGGGTATCCCGGTCTACAACGACGAAAAGTACGTAGGGGC
CGCCATTGAGGACATCCTGGCGCAGACCTACCGTAACCTCGAGATCGTTA
TCTCCGACAACGGATCCACAGATGGTTCCGCTGATATCTGTCAGCGTTAC
GCCGGTAAGGATGCACGCGTGCGCTATGTCCGTCAGGAGCGGAATATCGG
CCCGCATGCGAACTTTAGGTATCTACTGGATCATGCGCAGGGCGTTTATT
TCATGTGGGCGGCGTCGGATGACCGGTGGGATCCGGAGTTCATCGCGCGG
CTGGCCGGTTCGCTTGAGAGCCGGCCCGAGGCGACGGTAGCCTTCTGCCC
CTACAGTGAGATCGACGAGCAAGGG
back to top

protein sequence of jgi.p|Trimin1|143123

>Trimin1|143123|gw1.459.11.1 ID=Trimin1|143123|gw1.459.11.1|Name=jgi.p|Trimin1|143123|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
LVTVGIPVYNDEKYVGAAIEDILAQTYRNLEIVISDNGSTDGSADICQRY
AGKDARVRYVRQERNIGPHANFRYLLDHAQGVYFMWAASDDRWDPEFIAR
LAGSLESRPEATVAFCPYSEIDEQG
back to top

mRNA from alignment at Contig_459:12112..12486-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18663 ID=mRNA_18663|Name=jgi.p|Trimin1|143123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_459:12112..12486- (Tribonema minus UTEX_B_3156 )
CTGGTGACAGTGGGTATCCCGGTCTACAACGACGAAAAGTACGTAGGGGC CGCCATTGAGGACATCCTGGCGCAGACCTACCGTAACCTCGAGATCGTTA TCTCCGACAACGGATCCACAGATGGTTCCGCTGATATCTGTCAGCGTTAC GCCGGTAAGGATGCACGCGTGCGCTATGTCCGTCAGGAGCGGAATATCGG CCCGCATGCGAACTTTAGGTATCTACTGGATCATGCGCAGGGCGTTTATT TCATGTGGGCGGCGTCGGATGACCGGTGGGATCCGGAGTTCATCGCGCGG CTGGCCGGTTCGCTTGAGAGCCGGCCCGAGGCGACGGTAGCCTTCTGCCC CTACAGTGAGATCGACGAGCAAGGG
back to top

Coding sequence (CDS) from alignment at Contig_459:12112..12486-

>mRNA_18663 ID=mRNA_18663|Name=jgi.p|Trimin1|143123|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_459:12112..12486- (Tribonema minus UTEX_B_3156 )
CTGGTGACAGTGGGTATCCCGGTCTACAACGACGAAAAGTACGTAGGGGC
CGCCATTGAGGACATCCTGGCGCAGACCTACCGTAACCTCGAGATCGTTA
TCTCCGACAACGGATCCACAGATGGTTCCGCTGATATCTGTCAGCGTTAC
GCCGGTAAGGATGCACGCGTGCGCTATGTCCGTCAGGAGCGGAATATCGG
CCCGCATGCGAACTTTAGGTATCTACTGGATCATGCGCAGGGCGTTTATT
TCATGTGGGCGGCGTCGGATGACCGGTGGGATCCGGAGTTCATCGCGCGG
CTGGCCGGTTCGCTTGAGAGCCGGCCCGAGGCGACGGTAGCCTTCTGCCC
CTACAGTGAGATCGACGAGCAAGGG
back to top