mRNA_6138 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349572
Unique NamemRNA_6138
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349572 vs. uniprot
Match: A0A835YS88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS88_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.050e-22
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:    3 AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR 290
            AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR
Sbjct:    1 AAAVIPFPTCLQRRRSRDVDGRCGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGRDGRLSXXXXXXXXXXVTGLPAAAGQLAKWSR 96
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349572 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YS88_9STRA7.050e-22100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:764401..765469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349572|estExt_Genemark1.C_Ctg_450098
Hectar predicted targeting categoryother localisation
TranscriptId349894
TrackFilteredModels1
ProteinId349572
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349572gene_6138Tribonema minus UTEX_B_3156 geneContig_45 764401..765469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349572Trimin1|349572|estExt_Genemark1.C_Ctg_450098Tribonema minus UTEX_B_3156 polypeptideContig_45 764548..765467 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6138_3exon_6138_3Tribonema minus UTEX_B_3156 exonContig_45 764401..764694 -
exon_6138_2exon_6138_2Tribonema minus UTEX_B_3156 exonContig_45 764777..764850 -
exon_6138_1exon_6138_1Tribonema minus UTEX_B_3156 exonContig_45 765398..765469 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6138UTR3_6138Tribonema minus UTEX_B_3156 three_prime_UTRContig_45 764401..764547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6138CDS_6138Tribonema minus UTEX_B_3156 CDSContig_45 765398..765467 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6138UTR5_6138Tribonema minus UTEX_B_3156 five_prime_UTRContig_45 765468..765469 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6138 ID=mRNA_6138|Name=jgi.p|Trimin1|349572|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=440bp|location=Sequence derived from alignment at Contig_45:764401..765469- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGCTGTCATTCCCTTCCCTACATGTCTTCAACGGCGACGCTCC
CGCGACGTGGATGGCCGCTGCGGGCGCGGCGGCGGCAGCGGCGCCGGCTG
TCAAGCACGAGAACAAGCAGCCGTGCGATCTGCAGCAGGGCGTGGAAGAA
CGCGCGCTAGGGCGCAGCAGCGGCGGTACCGCAGCAGCAGCGGCAGAGAC
GGGCGGCTCTCAGCAGCGGCAGCGGCGGCGGCAGCCGCGGCGGTAACAGG
GCTGCCGGCTGCAGCTGGACAGCTAGCGAAGTGGTCTCGGTGACTGCGAT
GGCTGCAGTGCAGCGGCCAGTGAAGCGCGCGTACAGAGCAGAACTGACAT
GTTGCCTGCCTGGCTTGAAGCCCGAAGATCTGAGCATTGCACATAGAAAG
GGAGACTGGGTGATGCATTGCAGTGGCGGGGGGGGGGGGG
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protein sequence of jgi.p|Trimin1|349572

>Trimin1|349572|estExt_Genemark1.C_Ctg_450098 ID=Trimin1|349572|estExt_Genemark1.C_Ctg_450098|Name=jgi.p|Trimin1|349572|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp
AAAVIPFPTCLQRRRSRDVDGRCGRGGGSGAGCQAREQAAVRSAAGRGRT
RARAQQRRYRSSSGRDGRLSAAAAAAAAAAVTGLPAAAGQLAKWSR*
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mRNA from alignment at Contig_45:764401..765469-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6138 ID=mRNA_6138|Name=jgi.p|Trimin1|349572|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1069bp|location=Sequence derived from alignment at Contig_45:764401..765469- (Tribonema minus UTEX_B_3156 )
ATGCTGCTGCTGTCATTCCCTTCCCTACATGTCTTCAACGGCGACGCTCC
CGCGACGTGGATGGCCGCTGCGGTGACGGCTCTGGCGACACATACACCAC
CGGCAATGGCATCTGTTGGCAGTGCAAGAGCACTGATTATGCAGAACATT
ATGGCGAATTGGCTGCGATAGCAGTCACTGTCAGGAGACGAACACCCTGT
GCTATCTTCGCACAGCTTTGCACCTCTTCTGCGGCGCAGGGACGATGTTG
AAAACTCTGCACTGCGGTAGGCGCACTTTTCATACTTCAATCTGGAGTTG
AACTTCCCTTCTTAGCCAAGTTCACAACTGAGGTTAAATAAAGTTTGACG
GGCGGCAGCTGGGCGCCACGCCTGCTGCGCGAGCTGCTGCCATGGGACCA
CTGCTACGCAATGCCTGGTGACCACCGCTACGCATCTCCATCTGACCAGC
GCTGCAGTGGCGGCTGCGGCGGCAGCTATGGGCTGCTGCCACCGCGTGGC
GCGTTCAACGTGTCTCGCACATGCACGGCGGCCCTGTGCCATGTACATGA
GCGCAGGGCCACACTGGTCGCGCGACGGCAGCATGATGGCCAGGCGTATT
ACCACGTGCGCATGGCCAGGGCGCGGCGGCGGCAGCGGCGCCGGCTGTCA
AGCACGAGAACAAGCAGCCGTGCGATCTGCAGCAGGGCGTGGAGTACACT
ACACGGACGTTGACGCGCAGCAGGTGTTGGCGACGAAGCTGGACTACGGT
AATGTCTTTGCGCCGCACGGAAGAGAGAACGCGCGCTAGGGCGCAGCAGC
GGCGGTACCGCAGCAGCAGCGGCAGAGACGGGCGGCTCTCAGCAGCGGCA
GCGGCGGCGGCAGCCGCGGCGGTAACAGGGCTGCCGGCTGCAGCTGGACA
GCTAGCGAAGTGGTCTCGGTGACTGCGATGGCTGCAGTGCAGCGGCCAGT
GAAGCGCGCGTACAGAGCAGAACTGACATGTTGCCTGCCTGGCTTGAAGC
CCGAAGATCTGAGCATTGCACATAGAAAGGGAGACTGGGTGATGCATTGC
AGTGGCGGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at Contig_45:764401..765469-

>mRNA_6138 ID=mRNA_6138|Name=jgi.p|Trimin1|349572|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=291bp|location=Sequence derived from alignment at Contig_45:764401..765469- (Tribonema minus UTEX_B_3156 )
GCTGCTGCTGTCATTCCCTTCCCTACATGTCTTCAACGGCGACGCTCCCG
CGACGTGGATGGCCGCTGCGGGCGCGGCGGCGGCAGCGGCGCCGGCTGTC
AAGCACGAGAACAAGCAGCCGTGCGATCTGCAGCAGGGCGTGGAAGAACG
CGCGCTAGGGCGCAGCAGCGGCGGTACCGCAGCAGCAGCGGCAGAGACGG
GCGGCTCTCAGCAGCGGCAGCGGCGGCGGCAGCCGCGGCGGTAACAGGGC
TGCCGGCTGCAGCTGGACAGCTAGCGAAGTGGTCTCGGTGA
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