Trimin1|349557|estExt_Genemark1.C_Ctg_450072 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349557
Unique Name	Trimin1\|349557\|estExt_Genemark1.C_Ctg_450072
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	248

Homology

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BLAST of jgi.p|Trimin1|349557 vs. uniprot
Match: A0A835YS66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS66_9STRA)

HSP 1 Score: 439 bits (1128), Expect = 9.210e-155
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0

Query:    1 MSFGIQVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDADGGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLLQLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGFGAAXXXXXXXPLAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEXXXXXXXXARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF 247
            MSFGIQVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDADGGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLLQLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGFGAAXXXXXXXPLAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEXXXXXXXXARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF
Sbjct:    1 MSFGIQVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDADGGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLLQLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGFGAAXXXXXXXPLAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEXXXXXXXXARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF 247

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BLAST of jgi.p|Trimin1|349557 vs. uniprot
Match: A0A6H5KVA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVA5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.310e-15
Identity = 74/244 (30.33%), Postives = 113/244 (46.31%), Query Frame = 0

Query:    6 QVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDADGGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLLQLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGF-GAAXXXXXXXP-LAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEXXXXXXXXARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF 247
             V  AAAG +P+L+FG DA  ++ +A++ + A+++   +   DA     +    +L   ++ E                      L PAF  H   LR  F ++F+  FS +     DF   +  M +     F  A        P +A  W     AE V+L   ++ RV DRL+EG  ++  +  E+         + P WK L++R  A+  NY QATQ +R ARK SERRE+ +PR PLF
Sbjct:  413 DVEAAAAGEMPLLQFGTDAQGIVDEAVQSFLAKSSRSQI---DAPAAVLREKRGSLVSAVARE----------------------LEPAFRAHARHLRGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNTPGVADVWRLHWEAELVKLNEDMESRVQDRLSEGTWMLPPDPAEQAAAARK---KTPWWKGLVLRAAAMYFNYLQATQHLRRARKASERRERDVPRLPLF 628

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349557 vs. uniprot

BLAST of jgi.p|Trimin1|349557 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YS66_9STRA	9.210e-155	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5KVA5_9PHAE	2.310e-15	30.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..76

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_45	contig	Contig_45:571752..574370 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349557	mRNA_6106	Tribonema minus UTEX_B_3156	mRNA	Contig_45 571752..574520 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349557|estExt_Genemark1.C_Ctg_450072 ID=Trimin1|349557|estExt_Genemark1.C_Ctg_450072|Name=jgi.p|Trimin1|349557|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
MSFGIQVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDAD
GGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLL
QLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGFGAAAAAAAPPP
LAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEGGEAAAAA
ARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF*