Trimin1|349504|estExt_Genemark1.C_Ctg_450002 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349504
Unique NameTrimin1|349504|estExt_Genemark1.C_Ctg_450002
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length300
Homology
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA)

HSP 1 Score: 576 bits (1484), Expect = 2.770e-207
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK 299
            MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK
Sbjct:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK 299          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.080e-46
Identity = 121/284 (42.61%), Postives = 148/284 (52.11%), Query Frame = 0
Query:   25 DVLELQVTRVA-PTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAA----ADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGN------KGEAGGKKAKAP--PAKSKLAKVNTKGMKSLATLFGKQ 295
            ++LELQV R   P    SFF+ QAVQ DGAV+ A+RVDP  LLLP++     RW PL Q + E     L   RHL ADK+CDVNDR+GPD +L R+NE   LAWL +KV+R        A GG      A         G A  F   AAP DA +     A  + RA         LE VC+Y+  EWA ++A R       L   R     KRK   T WE   E DRNL LS G+G       +  A   KAK P   A+  LAKVN KGMKS+++ FGK+
Sbjct:   18 NLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGGGEESGWAXXXXXXXGAGFARDFQAIAAPMDARMQKEVEAECKQRA---------LEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRK---TVWEETAETDRNLELSHGSGGGQKAKTEAAAAATKAKQPLSHAQRSLAKVNKKGMKSISSFFGKK 289          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.390e-31
Identity = 113/330 (34.24%), Postives = 162/330 (49.09%), Query Frame = 0
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMT-ACKDRWIPLGQQLQEAR----LAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEG--MAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKA-------PATA-------WEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKSK--------------LAKVNTKGMKSLATLFGKQ 295
            + HPR+GE +K++           D+LELQ  +V+ + + SFF+  +V+SD  +++ TRVDP LLLLP +    + R++PL Q +  +        LL+CRHL  DKICDVND+LGP+ MLYRLNE K + WL  KV+R   HL   A     ADD   GA +    AAGF    AP     D +A AA+    +++  LR A+++V +Y    W   +        A +LE       K K        PATA       W+     D+ L  + G G+ G      A+  PAK K              L K    GMK++++ F K+
Sbjct:   47 LKHPRSGELLKYMA-------AGQDILELQ--KVSVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKICDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHL---ARVEPRADDPCGGAGDSASFAAGFQ---APR---TDASAGAADSGGVKKS--LRQAVQVVLEYTAERWRAPLLESLGLDEA-VLEPPSRKAAKSKQQGKADDEPATAGERRAQQWQDAATLDKALEYTQGLGSSG------AETDPAKKKQKLQATTRTTGNKKLTKGKVTGMKTISSFFQKK 349          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S3YG07_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG07_HETAK)

HSP 1 Score: 118 bits (295), Expect = 3.720e-28
Identity = 88/243 (36.21%), Postives = 123/243 (50.62%), Query Frame = 0
Query:   25 DVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAW------LLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLD---GGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVI--DPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAA-LLEARGGGGIKRKAPATAWEAC-REEDRNLSLS 254
            DV E+Q+ + +   + SFFVGQAVQSDG  Y+A+R+DP  ++LP+ +    R+ PL Q L    +A       +  C HL    ICDVNDRLGPD + YR+NEAK +AWL  K+ +V  HL    G +H                + G S  +   D+VI  DP                + A +++ +Y+  EW E+V   +    A  L EA G   +KRKA    WEA   E DR L+L+
Sbjct:    6 DVYEIQLLKAS--KYSSFFVGQAVQSDGNFYVASRIDPLFIVLPVFSKHGTRYSPLDQILSAGSVAGEHNFLQIASCNHLKLSNICDVNDRLGPDSIFYRINEAKVVAWLKMKIKQVYCHLKSEKGKSHMQVGGSFVRGFEATSKSTGSSSGSDTKDSVITTDPE--------------FKLAAKLIFEYICEEWQEKVLQSYSGLGAKDLEEASGAAPVKRKA----WEAPDAERDRLLALT 228          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.120e-21
Identity = 106/329 (32.22%), Postives = 154/329 (46.81%), Query Frame = 0
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTAC-KDRWIPLGQQLQ-EARLAWLL--RCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGF-------SGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNK--------------------------GEAGGKKAKAPPAKSKLAKVNTKGMKSLATLF 292
              HPR G   ++LL P     G L   ELQ  R + + F S+FV Q V SDG +Y+A+ VDP L+LLP++      R+ PL Q L  EA  A+L   +C+ L    +CDVND+LG D++LYRLN  K + WL  KV R    L       AA ++ N G   G AAGF        G +   D     A    +   A R    R A+E+V +Y+   WA ++  R      +  E R G G K++   +AW+   + ++  +++L  G +                             GG+      A+ KLAK N KG+KS+++ F
Sbjct:   45 FTHPRGGYPSQYLLSPA----GQL--CELQSFRPSGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQGLDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVALE---AAREEQNNGMGSGFAAGFVVEAGAIQGGSTGEDKRSTGAGGKVQTREATREEA-RLAVELVSEYLSEAWAVKLQHR---CGFSEEEMRQGAGAKKR---SAWDGDGDLEQGTAMALTQGKRXXXXXXXXXXXXXXXXXXXXXXXXMRSAQGGQSL----AQKKLAKTNLKGVKSISSFF 353          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A7S3HJE8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJE8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.080e-15
Identity = 75/231 (32.47%), Postives = 113/231 (48.92%), Query Frame = 0
Query:   28 ELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQL-QEARLAWL--LRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACRE-EDRNLSLS 254
            ELQ+T+  P  + S+F+ Q V S   +YMA   DP  L LP +     ++ PL Q +  +A+ A     R       ++CDVND+LG D++LYR NE K L WL  KV+  A  L       A++ +         A+GF+ +   + AV+  +AAAA+     R  ++  A+EI+ DY+    A+++   H   A  L        +KRK   T WE   E E   L+ S
Sbjct:    3 ELQITQ--PRKYSSWFINQRVSSGQDIYMANVFDPRFLCLPFLEKSAGKYSPLDQIVFMDAKYARFPFTRASSWKLGEMCDVNDKLGDDMILYRYNEVKMLEWLGRKVENTAKALMKQRLARASSQNTT------FASGFNIS-KQSTAVVASSAAAADAVTPSREDIV-LAVEIISDYLTPSAAQKLLQAHSVNATDLSTKNASASLKRK---TDWEQELELEKETLAFS 220          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A5A8DTM3_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTM3_CAFRO)

HSP 1 Score: 76.3 bits (186), Expect = 6.130e-12
Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 0
Query:    5 RTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAW--------LLR-CRHLGA-DKICDVNDRLGPDLMLYRLNEAKALAWLLSKV 132
            R G  V  L    H    +  ++ L+   VA  S  SFFVG ++  DG+  + T VDP LL+LP++ A   + +P  Q +      W        LLR C   G   ++CDV++R+GP ++LYRL+  K  AWL  K+
Sbjct:   38 RDGTGVTRLFGLGHPSGPAGPLVALEFRLVASDSPSSFFVGNSIVGDGSALLGTPVDPLLLVLPVLEASSAKLVPGSQLVDSVGATWGPAKAWSRLLRGCLGQGLLGRVCDVDERMGPSMLLYRLSLPKTRAWLRRKL 175          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: R1CCT5_EMIHU (RNase_H2-Ydr279 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CCT5_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 1.130e-8
Identity = 83/243 (34.16%), Postives = 110/243 (45.27%), Query Frame = 0
Query:    3 HPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDR------------WIPLGQQL--QEARLAWLLRCRHLGADK----ICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNA-----APNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAA 222
            HPRT + +    R    +   L+V      + A  S+    + Q VQ DGA+Y+AT +DP LLLLPL+   +              + PL +     EA L   L  R  G  +    ICDVND+ G  ++  RL++   L WL  K + VAAHL   AH   AA+   AGA  G A    G A        D    PAAAA + A       L TA  +V +Y+P  WA R+ A  D   AA
Sbjct:   21 HPRTSDPMMLGRRA---DSAILEVHRHVPPKAAKASWLVAGLEQVVQ-DGALYLATPIDPLLLLLPLLERARGGASSLKRESSAGLYKPLSEAFGGDEAGLEQHLT-RLSGLSERLRAICDVNDKYGEPMV--RLSDPLVLGWLRRKAEAVAAHLR--AH---AAEQQAAGATAGAA----GRAMTQFDCEGDEAGAPAAAAHDAA-------LATACHLVGEYLPDGWAARLCASLDVPEAA 240          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: UPI00106D86B5 (ribonuclease H2 subunit B-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D86B5)

HSP 1 Score: 58.9 bits (141), Expect = 2.550e-6
Identity = 74/311 (23.79%), Postives = 129/311 (41.48%), Query Frame = 0
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRH-LGADKICDVNDRLGP-DLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWE--ACREEDRNLSLSLGNGNKGEAGGKKAKAPP---------AKSKLAKVNTKGMKSLATLFGKQQKA 298
            + HP+TG   ++LL     E     + E+      P S+   F+  +V  DG +Y  T++D   ++LP + +   +++ L   LQE+    +    H +  + +C V D  G  DL++ +LN  K ++WL  KV +    L                      A    + A +   +      + ++R      L  A  +V DY+   W++++ A                GI  +   ++ E  AC++   + SL+            KAKA           A+  LAKVNTKGMKS+++ FG  +K+
Sbjct:   43 LPHPKTGHIQQYLLSKNKQE-----ISEILKFNETPRSW---FIDNSVLQDGNLYFGTKIDALFMVLPSLKSTSTKFMTLEHILQESDNNNICELSHCITKEDLCLVTDMKGEEDLIVCKLNHDKVISWLEKKVYQTEDQL--------------------KQASICTSGAQSSTFVR-----SSKSRGNTQDYLGYAFGLVSDYISDYWSQKLKASL--------------GINDEISGSSEEEPACKKVKLDESLAAKPNEDYSKFFAKAKATDQNTNVKLTAAQKSLAKVNTKGMKSISSFFGVPKKS 306          
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Match: A0A2P6U1T4_CHLSO (Ribonuclease H2 subunit B n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1T4_CHLSO)

HSP 1 Score: 58.5 bits (140), Expect = 2.720e-6
Identity = 44/146 (30.14%), Postives = 68/146 (46.58%), Query Frame = 0
Query:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHL-------GADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHL 139
            +  P+TG+   +LL       GS     LQ        + S+F+G+ VQ DG +++AT VDP LL+LPL+   + +   + Q L++          HL       G    C  + +       YRLN+ + LAWL  KVD+  A +
Sbjct:   27 LPDPKTGQAAAYLLA------GSC----LQEINWFKQQYSSWFIGERVQQDGGLFLATPVDPLLLVLPLLEQARAQQ-NVFQDLEQILSMAASPSAHLLAPLLEQGGQLSCLCDAKAAGGQSYYRLNDDRVLAWLRLKVDQAKAAM 161          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349504 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835YS23_9STRA2.770e-207100.00Ribonuclease H2, subunit B n=1 Tax=Tribonema minus... [more]
D7FZK3_ECTSI1.080e-4642.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XY24_9STRA4.390e-3134.24Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japon... [more]
A0A7S3YG07_HETAK3.720e-2836.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9DAM5_9STRA1.120e-2132.22Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis ... [more]
A0A7S3HJE8_9STRA8.080e-1532.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5A8DTM3_CAFRO6.130e-1234.78Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
R1CCT5_EMIHU1.130e-834.16RNase_H2-Ydr279 domain-containing protein (Fragmen... [more]
UPI00106D86B52.550e-623.79ribonuclease H2 subunit B-like n=1 Tax=Dendronepht... [more]
A0A2P6U1T4_CHLSO2.720e-630.14Ribonuclease H2 subunit B n=1 Tax=Chlorella soroki... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019024Ribonuclease H2 subunit B, wHTH domainPFAMPF09468RNase_H2-Ydr279coord: 102..211
e-value: 1.0E-6
score: 29.1
NoneNo IPR availableGENE3D1.10.20.120coord: 60..214
e-value: 4.3E-16
score: 61.2
NoneNo IPR availableGENE3D2.20.25.530coord: 1..58
e-value: 3.5E-7
score: 32.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..280
IPR040456Ribonuclease H2 subunit BPANTHERPTHR13383RIBONUCLEASE H2 SUBUNIT Bcoord: 2..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:14045..16343 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349504mRNA_6029Tribonema minus UTEX_B_3156 mRNAContig_45 14045..16464 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349504|estExt_Genemark1.C_Ctg_450002 ID=Trimin1|349504|estExt_Genemark1.C_Ctg_450002|Name=jgi.p|Trimin1|349504|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=300bp
MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQS
DGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGA
DKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAAD
DANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIV
CDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRN
LSLSLGNGNKGEAGGKKAKAPPAKSKLAKVNTKGMKSLATLFGKQQKAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019024RNase_H2_suB_wHTH
IPR040456RNase_H2_suB