mRNA_6115 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: A0A836CCA6_9STRA (Riboflavin kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCA6_9STRA) HSP 1 Score: 348 bits (893), Expect = 1.150e-120 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 2
Query: 80 MSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARLGDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPEMLQAGQALRDLDTGAAAAATPGAAATAPAVAPTAEDQAADEDGGDA 598
MSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARLGDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPEMLQAGQALRDLDTGAAAAATPGAAATAPAVAPTAEDQAADEDGGDA
Sbjct: 1 MSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARLGDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPEMLQAGQALRDLDTGAAAAATPGAAATAPAVAPTAEDQAADEDGGDA 173
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: A0A6H5KEX9_9PHAE (Riboflavin kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX9_9PHAE) HSP 1 Score: 166 bits (421), Expect = 8.870e-49 Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 2
Query: 80 MSSKVIKGFGRGSKLLGIPTANMCMKEVGH-TADPMETGIYCGFARLGDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPEML 466
+S+ V+KGFGRGSKLLGIPTANM MKEVG TGIY G+A L VY AV+S+GWNPYFDNK KTVEPHLLH+F D DFYGE LH+ +C +IR E+NF SLD+LI AI DI +A +K +P ++
Sbjct: 39 LSATVVKGFGRGSKLLGIPTANMDMKEVGERVVHDTTTGIYYGYAMLDGTVYPAVISVGWNPYFDNKSKTVEPHLLHEF-DQDFYGEKLHVLLCGFIRKELNFNSLDELIVAIADDIKFAKEKFKDPAVI 167
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: A0A8K1CNJ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNJ6_PYTOL) HSP 1 Score: 157 bits (398), Expect = 9.890e-46 Identity = 79/138 (57.25%), Postives = 99/138 (71.74%), Query Frame = 2
Query: 74 VLMSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARL-GDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPEMLQAGQAL 484
+ +S+KV++GFGRG K LG PTAN+C +++G + + TGIYCG+A + G YKAV SIGWNPYF+NKEKTVEPHL+H F D+DFYG L IC Y+RPEMNF SL+ LI AI DI + + L PE GQAL
Sbjct: 10 IKLSAKVVEGFGRGGKQLGCPTANLCREDLGTQLEELPTGIYCGWATVNGQGPYKAVASIGWNPYFNNKEKTVEPHLIHKF-DSDFYGSQLKFLICGYLRPEMNFPSLESLIDAIQSDIKQSEEWLELPE----GQAL 142
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: A0A2D4C3U3_PYTIN (Riboflavin kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3U3_PYTIN) HSP 1 Score: 155 bits (392), Expect = 7.990e-45 Identity = 76/130 (58.46%), Postives = 93/130 (71.54%), Query Frame = 2
Query: 74 VLMSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARL-GDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPE 460
+ +S+KV++GFGRG K LG PTAN+C +E+G + + TGIYCG+A + G +KAV SIGWNPYF NKEKTVEPHLLH F D DFYG L IC Y+RPEMNF SL+ LI AI DI+ + L PE
Sbjct: 10 IKLSAKVVEGFGRGGKQLGCPTANLCREELGSKLEELPTGIYCGWATVDGQGPFKAVASIGWNPYFQNKEKTVEPHLLHKF-DEDFYGARLKFVICGYLRPEMNFPSLEALIEAIQNDISQSEAWLDLPE 138
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: A0A484EIA2_BRELC (Riboflavin kinase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EIA2_BRELC) HSP 1 Score: 154 bits (390), Expect = 2.470e-44 Identity = 80/137 (58.39%), Postives = 99/137 (72.26%), Query Frame = 2
Query: 56 ITGLLDVL-MSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARLGDV-VYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPE 460
ITGL+ VL + + V++GFGRG K LG PTAN+ K++G + + TGIYCG+A + + YKAV SIGWNPYF NKEKTVEPHLLH+F + DFYG L L I YIRPEMNF SL+ LI+AI DIA ++ L PE
Sbjct: 3 ITGLMTVLRLQATVVEGFGRGGKQLGCPTANLSSKDLGDQLELLPTGIYCGWATVDGIGPYKAVASIGWNPYFKNKEKTVEPHLLHEF-EKDFYGAHLRLLISGYIRPEMNFSSLESLIKAIQDDIAQSNVWLDTPE 138
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: A0A024GRF2_9STRA (Riboflavin kinase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRF2_9STRA) HSP 1 Score: 150 bits (380), Expect = 5.710e-43 Identity = 75/137 (54.74%), Postives = 95/137 (69.34%), Query Frame = 2
Query: 56 ITGLLD-VLMSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARLGDV-VYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPE 460
I GL D + + +KV++GFGRG K LG PTAN+C +++G + + TGIYCG+A + D YKAV SIGWNPYF N+ KTVEPHLLH F + DFYG T+ L IC Y+RPE+NF SLD LI I DI + L + E
Sbjct: 4 IQGLKDFIYLQAKVVEGFGRGGKQLGCPTANLCREDLGEKLEQLPTGIYCGWATVNDQGPYKAVASIGWNPYFKNEVKTVEPHLLHHF-EKDFYGATVKLLICGYLRPELNFPSLDSLIATIQNDIKQSEVWLDQAE 139
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: W7UAD3_9STRA (Riboflavin kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAD3_9STRA) HSP 1 Score: 152 bits (383), Expect = 2.600e-42 Identity = 75/131 (57.25%), Postives = 90/131 (68.70%), Query Frame = 2
Query: 68 LDVLMSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARLGDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPE 460
L L+ + V+KGFGRGSKLLGIPTAN+ M +VG D GIY GF+ L VYKAV SIG NPYF N +KTVEPHLLH+F D DFYGE L +C Y+RPE +F SL++L+ AI DI A L P+
Sbjct: 97 LPFLLKASVVKGFGRGSKLLGIPTANLNMDQVGPVVDSWPNGIYYGFSCLKGDVYKAVASIGTNPYFKNSQKTVEPHLLHEFPD-DFYGEELKFLVCGYVRPERSFASLEELVAAIRSDIEVARTALEAPD 226
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: A0A3M6VKJ6_9STRA (Riboflavin kinase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKJ6_9STRA) HSP 1 Score: 147 bits (372), Expect = 8.160e-42 Identity = 73/130 (56.15%), Postives = 91/130 (70.00%), Query Frame = 2
Query: 74 VLMSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARLGDV-VYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEPE 460
+ + + V++GFGRG K LG PTAN+ K++G D + TGIYCG+A + D YKAV SIGWNPYF N+EKTVEPHLLH F + DFYG + I YIRPEMNF SL+ LI+AI DIA + + L PE
Sbjct: 10 IRLQATVVEGFGRGGKQLGCPTANLSSKDLGDILDQLPTGIYCGWATVDDKGPYKAVASIGWNPYFKNEEKTVEPHLLHKF-EKDFYGAQIKFLIAGYIRPEMNFSSLEALIKAIQDDIAQSDEWLDTPE 138
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: A0A0P1AED2_PLAHL (Riboflavin kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AED2_PLAHL) HSP 1 Score: 147 bits (370), Expect = 1.590e-41 Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 2
Query: 80 MSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARL-GDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDIAYAHQKLAEP 457
+ + V++G GRG K LG PTAN+ K++G D + TGIYCG+A + G +KAVVSIGWNPYF +KEKTVEPHLLH F D DFYG L L I Y+RPEM+F SL+ L++AIH DIA +++ L P
Sbjct: 11 LQATVVEGLGRGGKQLGCPTANLSRKDLGDQLDQLPTGIYCGWATVDGKGPFKAVVSIGWNPYFKDKEKTVEPHLLHKF-DEDFYGAQLKLVISGYLRPEMDFPSLESLVKAIHDDIAQSNEWLDTP 136
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Match: F0WN49_9STRA (Riboflavin kinase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WN49_9STRA) HSP 1 Score: 146 bits (369), Expect = 2.620e-41 Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 2
Query: 74 VLMSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARL-GDVVYKAVVSIGWNPYFDNKEKTVEPHLLHDFGDNDFYGETLHLRICSYIRPEMNFVSLDDLIRAIHGDI 427
+ + +KV++GFGRG K LG PTAN+ +++G + + TGIYCG+A + G YKAV SIGWNPYF N+ KTVEPHLLH F + DFYG TL L IC Y+RPEMNF SL+ LI AI DI
Sbjct: 11 IYLQAKVVEGFGRGGKQLGCPTANLSREDLGEKLEQLSTGIYCGWATVNGHGPYKAVASIGWNPYFKNEVKTVEPHLLHHF-EEDFYGATLKLLICGYLRPEMNFPSLESLITAIQNDI 128 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|68999 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6115 ID=mRNA_6115|Name=jgi.p|Trimin1|68999|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_45:632830..635017- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGGCACAGTTACACTTCTGGAGTTCACTCCGCTTGCTGCGTGTGTGCGTCback to top protein sequence of jgi.p|Trimin1|68999 >Trimin1|68999|CE68998_180 ID=Trimin1|68999|CE68998_180|Name=jgi.p|Trimin1|68999|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp MSSKVIKGFGRGSKLLGIPTANMCMKEVGHTADPMETGIYCGFARLGDVVback to top mRNA from alignment at Contig_45:632830..635017- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6115 ID=mRNA_6115|Name=jgi.p|Trimin1|68999|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2188bp|location=Sequence derived from alignment at Contig_45:632830..635017- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_45:632830..635017- >mRNA_6115 ID=mRNA_6115|Name=jgi.p|Trimin1|68999|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=522bp|location=Sequence derived from alignment at Contig_45:632830..635017- (Tribonema minus UTEX_B_3156 )back to top |