mRNA_9109 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349490
Unique NamemRNA_9109
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835Z0D5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D5_9STRA)

HSP 1 Score: 554 bits (1428), Expect = 1.270e-199
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
Query:    1 MSQVEHEEKELDAVLQRGNGQSTQVGADPVGYGPAESRLRLKVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819
            MSQVEHEEKELDAVLQRGNGQSTQVGADPVGYGPAESRLRLKVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE
Sbjct:    1 MSQVEHEEKELDAVLQRGNGQSTQVGADPVGYGPAESRLRLKVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 273          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835YTN5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN5_9STRA)

HSP 1 Score: 345 bits (886), Expect = 7.240e-118
Identity = 180/217 (82.95%), Postives = 186/217 (85.71%), Query Frame = 1
Query:  211 VLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR--------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819
            VL DYC TFAEHEDGMYDELLHPA+SG  R    SAR R  +VARVAEVI+P+RRQRMPPEWRP RQRKQKHRKWRTNRRDR AGRRVVF GVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEA TTICC GCGQRTQPGGEQHGHRNR              AAANGG+Q LVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEG+GDE
Sbjct:    8 VLADYCTTFAEHEDGMYDELLHPAQSGQ-RFIRFSARQR--AVARVAEVIAPIRRQRMPPEWRPFRQRKQKHRKWRTNRRDRRAGRRVVFFGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEAFTTICCPGCGQRTQPGGEQHGHRNRVCNSPLPHGVCPIQAAANGGHQRLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGDGDE 221          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835YLP0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP0_9STRA)

HSP 1 Score: 319 bits (817), Expect = 8.900e-106
Identity = 175/240 (72.92%), Postives = 185/240 (77.08%), Query Frame = 1
Query:  154 YRDACKALAGEHTRTCDIE----VLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR--------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819
            YR    ++  E  R C +     VLT YC TFAEHEDGMYDELLHPA S V      SA+ R  +VARVAEVI+PMRR+RMPPEWRP RQRKQKHRKWRTNRR   AGRRVVF GVAA+VAARGRPPIPTKAVVWQLACRTVIIM PEA TT+CC GCGQRTQPGGEQHGH NR              AAA  GNQGLVVFN DRSG TNMGMRGVCAVCGVEDIIPGYPWMGPEGNGD+
Sbjct:   96 YRTWALSILNEEKRGCPLHRQRRVLTVYCTTFAEHEDGMYDELLHPACS-VQWFVRFSAQQR--AVARVAEVIAPMRRRRMPPEWRPRRQRKQKHRKWRTNRR---AGRRVVFFGVAAQVAARGRPPIPTKAVVWQLACRTVIIMAPEAFTTVCCPGCGQRTQPGGEQHGHTNRVCNSTLLHRACLIQAAALDGNQGLVVFNCDRSGATNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDK 329          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835ZBR2_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR2_9STRA)

HSP 1 Score: 333 bits (854), Expect = 3.430e-104
Identity = 207/389 (53.21%), Postives = 226/389 (58.10%), Query Frame = 1
Query:    1 MSQVEHEEKELDAVLQRGNGQ------STQVGADPVGYGPAESRLRLK-----------------------------------------------------------VSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDG---------MYDELLHPAR---------------------------------SGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR--------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPE 804
            MSQV +E+K+L+AVLQ GNG         +VGADPVGYGPA+SR+RLK                                                           +S  TAN+EYRDA  ALAGEHTRTC IE+   +C   A              +  + +H +R                                  GVF  SSVSAR R  +VARVAEVI+PM RQRMPPEWRPIRQRKQ HRKWRTNRR R AGRRVVF GVAARVA RGRPPIPTKAVVWQLACRTVII+VPEA TTICC GCGQRTQP GEQHGHRNR              AAANGGNQGLVVFNRDRSGG NMGMRGVCAVCG+EDIIPGY WMGPE
Sbjct:    1 MSQVGYEDKQLEAVLQGGNGVFRLEKVHREVGADPVGYGPADSRMRLKALNGVAVTGADPGQVLAVSGAVAHGKHWRRENAADFVLDPPGQRVEVLEVSGELYRTWALSTRTANNEYRDARTALAGEHTRTCGIEMSACWCTNTASTIQSFLTVEECIVLSTDPVHASRICCIALPLCRSSPTTAPPSLSTRTACTMSCCTLRGVFSGSSVSARSR--AVARVAEVIAPMGRQRMPPEWRPIRQRKQMHRKWRTNRRARRAGRRVVFFGVAARVAWRGRPPIPTKAVVWQLACRTVIIVVPEAFTTICCPGCGQRTQPRGEQHGHRNRVCNSPLPHGVCPIQAAANGGNQGLVVFNRDRSGGINMGMRGVCAVCGMEDIIPGYHWMGPE 387          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835ZHL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHL3_9STRA)

HSP 1 Score: 320 bits (821), Expect = 2.660e-102
Identity = 172/232 (74.14%), Postives = 178/232 (76.72%), Query Frame = 1
Query:  124 KVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819
            + +R TANDEYRDAC ALAGEHT TCD EVLTDYC TFAEHEDGM+                 SAR R  +VARVAEVI+PMRRQRMPPEWRPIRQRKQKHRKWR NRRDR AGRRVVF GVAARVA RG PPIPTKAVVWQLACRTVIIMVPEA TTICC G     QP                NQGLVVFNRDRSGGTN+GMRGVCAVCGVEDIIPGYPWMGPEGNGDE
Sbjct:   48 EAARRTANDEYRDACTALAGEHTHTCDFEVLTDYCTTFAEHEDGMFIRF--------------SARQR--AVARVAEVIAPMRRQRMPPEWRPIRQRKQKHRKWRINRRDRRAGRRVVFFGVAARVAGRGGPPIPTKAVVWQLACRTVIIMVPEAFTTICCPG-----QPR---------------NQGLVVFNRDRSGGTNIGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 243          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A836CF59_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF59_9STRA)

HSP 1 Score: 279 bits (713), Expect = 1.880e-91
Identity = 169/265 (63.77%), Postives = 177/265 (66.79%), Query Frame = 1
Query:   70 QVGADPVGYGPAESRLRLKVSRCTANDEYRDACKALAGEHTRTCDI-EVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR--------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819
            +VGADPVGYGPA+S +RL                AL G      D  +V TDYC TF E  DGMYDELLHPARS V R    SAR R  +VARVAE                      KHRKWRTNRRDR AG+ VVF GVAARVAARGRPPIPTKAVVWQLACRTVI MVPE  TTICC GCGQRTQPGGEQHGHRNR              AAANGGNQGLV    +RS GTNMGMRGVCAVCGVEDIIPGYPWMGPEG+GDE
Sbjct:   12 EVGADPVGYGPADSWMRLT---------------ALNGVAVTGIDPGQVFTDYCTTFTE--DGMYDELLHPARS-VQRFIRFSARQR--AVARVAE----------------------KHRKWRTNRRDRRAGQHVVFFGVAARVAARGRPPIPTKAVVWQLACRTVI-MVPEVFTTICCPGCGQRTQPGGEQHGHRNRVCNSNLPHGVCPIQAAANGGNQGLV----NRSDGTNMGMRGVCAVCGVEDIIPGYPWMGPEGDGDE 229          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A836CAL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL3_9STRA)

HSP 1 Score: 295 bits (756), Expect = 1.520e-90
Identity = 160/245 (65.31%), Postives = 183/245 (74.69%), Query Frame = 1
Query:  124 KVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRA--------------AANG-GNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNG 813
            + +R  ANDEY DAC ALA EHTRT DIEVLTD+C  +AEH D MY+ELLH  R  + R S   A+ R  + ARVAEVI+PMRRQRMPP W+P RQR+QKHRKWR+NRR   AGRRVVF GVAAR  ARGRP IPTKAVVWQLACR  ++M PEA TT+CC GCG+RT+PGG +HGHRNR               A +G G +GLVVFNRDRSG TN+G+RGVCAV GVEDIIPGYPW   EG+G
Sbjct:  587 ETARRVANDEYNDACTALADEHTRTGDIEVLTDHCTAYAEHGDAMYEELLHAVRK-IQRFSHFRAQQR--AAARVAEVIAPMRRQRMPPGWKPRRQRRQKHRKWRSNRR---AGRRVVFFGVAARTPARGRPSIPTKAVVWQLACRAPVVMTPEAHTTVCCPGCGERTRPGGAEHGHRNRVCDSNLPHRICPIQEAVHGVGVRGLVVFNRDRSGATNIGVRGVCAVSGVEDIIPGYPWE--EGDG 823          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A836CEL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL4_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.480e-87
Identity = 174/357 (48.74%), Postives = 190/357 (53.22%), Query Frame = 1
Query:    7 QVEHEEKELDAVLQRGNGQ------STQVGADPVGYGPAESRLRLKV--------------------------------------------------------------------SRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819
            QV +E+K+L+AVLQ GNG         +VGADPVGYGPA+SR+RLK                                                                     +R TANDEYRDAC ALAGEHTRTCD+EVLTDY  TFAEHEDG+YDELLHPARS V R    SAR R  +VARVAEV++P                                                        AVVWQLACRTVIIMVPEA TTI C GCGQRTQPGGEQHGHRNR            AAANGG QGL+VFNR+RSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEG  +E
Sbjct:   69 QVGNEDKQLEAVLQGGNGVFRLEKVHREVGADPVGYGPADSRMRLKALNGVAVTVVNPGQVLAVSGAVAHGELWRRENAADFVLDPAIRRAEVLEVSGELYRTWALSILNEQKEAARRTANDEYRDACTALAGEHTRTCDVEVLTDYYTTFAEHEDGIYDELLHPARS-VQRFIRFSARQR--AVARVAEVMAP--------------------------------------------------------AVVWQLACRTVIIMVPEAFTTIRCPGCGQRTQPGGEQHGHRNRVCNLPHRVCPIQAAANGGKQGLMVFNRNRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGERNE 366          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835Z9D2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D2_9STRA)

HSP 1 Score: 235 bits (599), Expect = 3.680e-67
Identity = 131/194 (67.53%), Postives = 139/194 (71.65%), Query Frame = -1
Query:  217 DRAHATHAHVGAAAAVAVEDHQPLIPAVRRC--------------TIPVAVLLAAWLSALATPRAADGGESLRHHDDDCTARQLPHHRLGGDGRTAARRHPCGDTKEHDAPSRTAVPAVGPPLAVLLFPLPYGSPFGRHPLPSHRRDHLRHPGD*QPSAAR*NG*MSEHSTPRRVQQLIVHAVLVLSEGDAVVG 756
            DRAH THAHVG AAA+AV+DHQPLIP VR C              TI VAVLLA WLSALATPRAA GGESLRHHDD+CTARQLPHHRLG +GRTA RRHPC DT+EH  P       VGPPLAVLLFP P GSPFGR PLPSHRR HLRHP D +P            +TPR VQ L+VHAVLVLSEG AV G
Sbjct:  867 DRAHDTHAHVGGAAALAVKDHQPLIPTVRGCLNGTDAVRQVGVAHTIRVAVLLAGWLSALATPRAAGGGESLRHHDDECTARQLPHHRLGENGRTAVRRHPCSDTEEHATP-------VGPPLAVLLFPRPSGSPFGRRPLPSHRRGHLRHPSD-RPLLRAQAETDESLNTPRSVQHLVVHAVLVLSEGGAVGG 1052          
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A836CJK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 6.910e-45
Identity = 102/237 (43.04%), Postives = 139/237 (58.65%), Query Frame = 1
Query:  124 KVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSA-RGRGLSVARVAEVISPMRRQRMPPEWRPIR-------QRKQKHRKWR-TNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR-------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGY 786
            +  R  AN  Y DA  ALA  HTRT   +VL  YC T+  H D M+ ELLHPAR    RH   S  R +  ++A++AE ++P+R Q  PP W+ +R       +R+++H++WR T+RR     RR++F G  A   +RGR  IP K +V QLACR   +M P+  ++  C  CGQ T+ GG++ GHRNR       A A     G+ V +RD +   N+GMRGV A CGV+DIIPGY
Sbjct:  576 EAQRRGANQAYSDALAALADRHTRTGRYQVLRAYCTTWGHHADAMWGELLHPAR----RHQRFSRFRAQQAAIAKMAEKLAPIRLQHRPPGWKHVRSRGRRYPRRRRRHKRWRDTHRRP----RRIIFFGACAHFPSRGRASIPIKKLVAQLACRCPTLMTPQPYSSASCLVCGQPTRGGGDEFGHRNRVCRNQNCALAQAAEGGVAVIDRDTNARANLGMRGVYATCGVDDIIPGY 804          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0D5_9STRA1.270e-199100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTN5_9STRA7.240e-11882.95Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YLP0_9STRA8.900e-10672.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBR2_9STRA3.430e-10453.21Elongation of fatty acids protein n=1 Tax=Tribonem... [more]
A0A835ZHL3_9STRA2.660e-10274.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF59_9STRA1.880e-9163.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAL3_9STRA1.520e-9065.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEL4_9STRA1.480e-8748.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9D2_9STRA3.680e-6767.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJK5_9STRA6.910e-4543.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:694064..695328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349490|estExt_Genemark1.C_Ctg_440049
Hectar predicted targeting categoryother localisation
TranscriptId349812
TrackFilteredModels1
ProteinId349490
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349490gene_9109Tribonema minus UTEX_B_3156 geneContig_44 694064..695328 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9109_1exon_9109_1Tribonema minus UTEX_B_3156 exonContig_44 694064..694197 +
exon_9109_2exon_9109_2Tribonema minus UTEX_B_3156 exonContig_44 694339..694414 +
exon_9109_3exon_9109_3Tribonema minus UTEX_B_3156 exonContig_44 694676..695128 +
exon_9109_4exon_9109_4Tribonema minus UTEX_B_3156 exonContig_44 695170..695328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9109CDS_9109Tribonema minus UTEX_B_3156 CDSContig_44 694064..694197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349490Trimin1|349490|estExt_Genemark1.C_Ctg_440049Tribonema minus UTEX_B_3156 polypeptideContig_44 694064..695328 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9109 ID=mRNA_9109|Name=jgi.p|Trimin1|349490|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_44:694064..695328+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACAGGTTGAGCACGAGGAGAAGGAGCTGGACGCTGTGCTGCAGAG
AGGCAACGGACAGAGTACACAGGTGGGGGCTGACCCTGTGGGCTATGGGC
CCGCTGAGTCCCGGTTGCGCCTGAAGGTGTCGCGTTGCACCGCCAACGAC
GAGTACAGAGATGCGTGCAAGGCGCTGGCGGGGGAGCACACGCGCACCTG
TGACATTGAGGTCCTCACCGACTACTGCATCACCTTCGCTGAGCACGAGG
ACGGCATGTACGATGAGCTGCTGCACCCTGCGCGGAGTGGAGTGTTCAGA
CATTCATCCGTTTCAGCGCGCGGCAGAGGGCTGTCAGTCGCCAGGGTGGC
GGAGGTGATCTCGCCGATGCGACGGCAGCGGATGCCGCCCGAATGGAGAC
CCATACGGCAGCGGAAACAGAAGCACCGCAAGTGGCGGACCAACCGCCGG
GACCGCTGTGCGGGACGGCGCGTCGTGTTCCTTGGTGTCGCCGCACGGGT
GGCGGCGCGCGGCCGTCCTCCCATCCCCACCAAGGCGGTGGTGTGGCAGC
TGGCGTGCCGTACAGTCATCATCATGGTGCCGGAGGCTCTCACCACCATC
TGCTGCGCGGGGTGTGGCCAGCGCACTCAGCCAGGCGGCGAGCAGCACGG
CCACAGGAATCGTGCAGCGGCGAACGGCGGGAATCAGGGGCTGGTGGTCT
TCAACCGCGACCGCAGCGGCGGCACCAACATGGGCATGCGTGGCGTGTGC
GCGGTCTGCGGCGTGGAGGACATCATCCCGGGGTACCCTTGGATGGGGCC
TGAGGGTAATGGGGACGAGTAG
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protein sequence of jgi.p|Trimin1|349490

>Trimin1|349490|estExt_Genemark1.C_Ctg_440049 ID=Trimin1|349490|estExt_Genemark1.C_Ctg_440049|Name=jgi.p|Trimin1|349490|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
MSQVEHEEKELDAVLQRGNGQSTQVGADPVGYGPAESRLRLKVSRCTAND
EYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFR
HSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRR
DRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTI
CCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVC
AVCGVEDIIPGYPWMGPEGNGDE*
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mRNA from alignment at Contig_44:694064..695328+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9109 ID=mRNA_9109|Name=jgi.p|Trimin1|349490|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1265bp|location=Sequence derived from alignment at Contig_44:694064..695328+ (Tribonema minus UTEX_B_3156 )
ATGTCACAGGTTGAGCACGAGGAGAAGGAGCTGGACGCTGTGCTGCAGAG AGGCAACGGACAGAGTACACAGGTGGGGGCTGACCCTGTGGGCTATGGGC CCGCTGAGTCCCGGTTGCGCCTGAAGGTGTCGCGGTGACTGACGTCGACC CCGGGCAGGTGCTTGCAGTTGGTGGAGCTGTTGCCCTGGGCAAGCACTGG CGACGCGAAAATGCGGTAGACTTTGTGCTGGATCCTGCGATTCGGCGTGC GGAGGTGTTTGAGGTGTCCTGCGAGTTGCACCGCCAACGACGAGTACAGA GATGCGTGCAAGGCGCTGGCGGGGGAGCACACGCGCACCTGTGACATTGA GGTGAGCTGGGGCAAGGAGTAGGCTAAGCCTAGACTGAGTGCAGTCCTCA CTTGGGCACCTGCTCTGCTCCAGACGCAGAGTCTCCTGCTTGTGTAGCGT CAGACTGTCTGTCTGTATGTGGCCTGCCTGCACCAGATGTCAGCCTGCAC CAACACGGCGTCTTCCGAGTCGGTATAGACTTTCTTGACGGTCGAAGAGC GCATTGTGCTCAGCACTGACACTGTGCATCCCTTTTTGCTGCATTGCTCT GCCCTCGTGTAGGTCCTCACCGACTACTGCATCACCTTCGCTGAGCACGA GGACGGCATGTACGATGAGCTGCTGCACCCTGCGCGGAGTGGAGTGTTCA GACATTCATCCGTTTCAGCGCGCGGCAGAGGGCTGTCAGTCGCCAGGGTG GCGGAGGTGATCTCGCCGATGCGACGGCAGCGGATGCCGCCCGAATGGAG ACCCATACGGCAGCGGAAACAGAAGCACCGCAAGTGGCGGACCAACCGCC GGGACCGCTGTGCGGGACGGCGCGTCGTGTTCCTTGGTGTCGCCGCACGG GTGGCGGCGCGCGGCCGTCCTCCCATCCCCACCAAGGCGGTGGTGTGGCA GCTGGCGTGCCGTACAGTCATCATCATGGTGCCGGAGGCTCTCACCACCA TCTGCTGCGCGGGGTGTGGCCAGCGCACTCAGCCAGGCGGCGAGCAGCAC GGCCACAGGAATCGTGTGTGCAATCCCCTCTGCCGCACGGCATCTGCCCC ATTCAGGCAGCGGCGAACGGCGGGAATCAGGGGCTGGTGGTCTTCAACCG CGACCGCAGCGGCGGCACCAACATGGGCATGCGTGGCGTGTGCGCGGTCT GCGGCGTGGAGGACATCATCCCGGGGTACCCTTGGATGGGGCCTGAGGGT AATGGGGACGAGTAG
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Coding sequence (CDS) from alignment at Contig_44:694064..695328+

>mRNA_9109 ID=mRNA_9109|Name=jgi.p|Trimin1|349490|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_44:694064..695328+ (Tribonema minus UTEX_B_3156 )
ATGTCACAGGTTGAGCACGAGGAGAAGGAGCTGGACGCTGTGCTGCAGAG
AGGCAACGGACAGAGTACACAGGTGGGGGCTGACCCTGTGGGCTATGGGC
CCGCTGAGTCCCGGTTGCGCCTGAAGGTGTCGCGTTGCACCGCCAACGAC
GAGTACAGAGATGCGTGCAAGGCGCTGGCGGGGGAGCACACGCGCACCTG
TGACATTGAGGTCCTCACCGACTACTGCATCACCTTCGCTGAGCACGAGG
ACGGCATGTACGATGAGCTGCTGCACCCTGCGCGGAGTGGAGTGTTCAGA
CATTCATCCGTTTCAGCGCGCGGCAGAGGGCTGTCAGTCGCCAGGGTGGC
GGAGGTGATCTCGCCGATGCGACGGCAGCGGATGCCGCCCGAATGGAGAC
CCATACGGCAGCGGAAACAGAAGCACCGCAAGTGGCGGACCAACCGCCGG
GACCGCTGTGCGGGACGGCGCGTCGTGTTCCTTGGTGTCGCCGCACGGGT
GGCGGCGCGCGGCCGTCCTCCCATCCCCACCAAGGCGGTGGTGTGGCAGC
TGGCGTGCCGTACAGTCATCATCATGGTGCCGGAGGCTCTCACCACCATC
TGCTGCGCGGGGTGTGGCCAGCGCACTCAGCCAGGCGGCGAGCAGCACGG
CCACAGGAATCGTGCAGCGGCGAACGGCGGGAATCAGGGGCTGGTGGTCT
TCAACCGCGACCGCAGCGGCGGCACCAACATGGGCATGCGTGGCGTGTGC
GCGGTCTGCGGCGTGGAGGACATCATCCCGGGGTACCCTTGGATGGGGCC
TGAGGGTAATGGGGACGAGTAG
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