mRNA_9109 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835Z0D5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D5_9STRA) HSP 1 Score: 554 bits (1428), Expect = 1.270e-199 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1 Query: 1 MSQVEHEEKELDAVLQRGNGQSTQVGADPVGYGPAESRLRLKVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819 MSQVEHEEKELDAVLQRGNGQSTQVGADPVGYGPAESRLRLKVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE Sbjct: 1 MSQVEHEEKELDAVLQRGNGQSTQVGADPVGYGPAESRLRLKVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 273
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835YTN5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN5_9STRA) HSP 1 Score: 345 bits (886), Expect = 7.240e-118 Identity = 180/217 (82.95%), Postives = 186/217 (85.71%), Query Frame = 1 Query: 211 VLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR--------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819 VL DYC TFAEHEDGMYDELLHPA+SG R SAR R +VARVAEVI+P+RRQRMPPEWRP RQRKQKHRKWRTNRRDR AGRRVVF GVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEA TTICC GCGQRTQPGGEQHGHRNR AAANGG+Q LVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEG+GDE Sbjct: 8 VLADYCTTFAEHEDGMYDELLHPAQSGQ-RFIRFSARQR--AVARVAEVIAPIRRQRMPPEWRPFRQRKQKHRKWRTNRRDRRAGRRVVFFGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEAFTTICCPGCGQRTQPGGEQHGHRNRVCNSPLPHGVCPIQAAANGGHQRLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGDGDE 221
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835YLP0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP0_9STRA) HSP 1 Score: 319 bits (817), Expect = 8.900e-106 Identity = 175/240 (72.92%), Postives = 185/240 (77.08%), Query Frame = 1 Query: 154 YRDACKALAGEHTRTCDIE----VLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR--------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819 YR ++ E R C + VLT YC TFAEHEDGMYDELLHPA S V SA+ R +VARVAEVI+PMRR+RMPPEWRP RQRKQKHRKWRTNRR AGRRVVF GVAA+VAARGRPPIPTKAVVWQLACRTVIIM PEA TT+CC GCGQRTQPGGEQHGH NR AAA GNQGLVVFN DRSG TNMGMRGVCAVCGVEDIIPGYPWMGPEGNGD+ Sbjct: 96 YRTWALSILNEEKRGCPLHRQRRVLTVYCTTFAEHEDGMYDELLHPACS-VQWFVRFSAQQR--AVARVAEVIAPMRRRRMPPEWRPRRQRKQKHRKWRTNRR---AGRRVVFFGVAAQVAARGRPPIPTKAVVWQLACRTVIIMAPEAFTTVCCPGCGQRTQPGGEQHGHTNRVCNSTLLHRACLIQAAALDGNQGLVVFNCDRSGATNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDK 329
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835ZBR2_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR2_9STRA) HSP 1 Score: 333 bits (854), Expect = 3.430e-104 Identity = 207/389 (53.21%), Postives = 226/389 (58.10%), Query Frame = 1 Query: 1 MSQVEHEEKELDAVLQRGNGQ------STQVGADPVGYGPAESRLRLK-----------------------------------------------------------VSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDG---------MYDELLHPAR---------------------------------SGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR--------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPE 804 MSQV +E+K+L+AVLQ GNG +VGADPVGYGPA+SR+RLK +S TAN+EYRDA ALAGEHTRTC IE+ +C A + + +H +R GVF SSVSAR R +VARVAEVI+PM RQRMPPEWRPIRQRKQ HRKWRTNRR R AGRRVVF GVAARVA RGRPPIPTKAVVWQLACRTVII+VPEA TTICC GCGQRTQP GEQHGHRNR AAANGGNQGLVVFNRDRSGG NMGMRGVCAVCG+EDIIPGY WMGPE Sbjct: 1 MSQVGYEDKQLEAVLQGGNGVFRLEKVHREVGADPVGYGPADSRMRLKALNGVAVTGADPGQVLAVSGAVAHGKHWRRENAADFVLDPPGQRVEVLEVSGELYRTWALSTRTANNEYRDARTALAGEHTRTCGIEMSACWCTNTASTIQSFLTVEECIVLSTDPVHASRICCIALPLCRSSPTTAPPSLSTRTACTMSCCTLRGVFSGSSVSARSR--AVARVAEVIAPMGRQRMPPEWRPIRQRKQMHRKWRTNRRARRAGRRVVFFGVAARVAWRGRPPIPTKAVVWQLACRTVIIVVPEAFTTICCPGCGQRTQPRGEQHGHRNRVCNSPLPHGVCPIQAAANGGNQGLVVFNRDRSGGINMGMRGVCAVCGMEDIIPGYHWMGPE 387
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835ZHL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHL3_9STRA) HSP 1 Score: 320 bits (821), Expect = 2.660e-102 Identity = 172/232 (74.14%), Postives = 178/232 (76.72%), Query Frame = 1 Query: 124 KVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRAAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819 + +R TANDEYRDAC ALAGEHT TCD EVLTDYC TFAEHEDGM+ SAR R +VARVAEVI+PMRRQRMPPEWRPIRQRKQKHRKWR NRRDR AGRRVVF GVAARVA RG PPIPTKAVVWQLACRTVIIMVPEA TTICC G QP NQGLVVFNRDRSGGTN+GMRGVCAVCGVEDIIPGYPWMGPEGNGDE Sbjct: 48 EAARRTANDEYRDACTALAGEHTHTCDFEVLTDYCTTFAEHEDGMFIRF--------------SARQR--AVARVAEVIAPMRRQRMPPEWRPIRQRKQKHRKWRINRRDRRAGRRVVFFGVAARVAGRGGPPIPTKAVVWQLACRTVIIMVPEAFTTICCPG-----QPR---------------NQGLVVFNRDRSGGTNIGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 243
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A836CF59_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF59_9STRA) HSP 1 Score: 279 bits (713), Expect = 1.880e-91 Identity = 169/265 (63.77%), Postives = 177/265 (66.79%), Query Frame = 1 Query: 70 QVGADPVGYGPAESRLRLKVSRCTANDEYRDACKALAGEHTRTCDI-EVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR--------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819 +VGADPVGYGPA+S +RL AL G D +V TDYC TF E DGMYDELLHPARS V R SAR R +VARVAE KHRKWRTNRRDR AG+ VVF GVAARVAARGRPPIPTKAVVWQLACRTVI MVPE TTICC GCGQRTQPGGEQHGHRNR AAANGGNQGLV +RS GTNMGMRGVCAVCGVEDIIPGYPWMGPEG+GDE Sbjct: 12 EVGADPVGYGPADSWMRLT---------------ALNGVAVTGIDPGQVFTDYCTTFTE--DGMYDELLHPARS-VQRFIRFSARQR--AVARVAE----------------------KHRKWRTNRRDRRAGQHVVFFGVAARVAARGRPPIPTKAVVWQLACRTVI-MVPEVFTTICCPGCGQRTQPGGEQHGHRNRVCNSNLPHGVCPIQAAANGGNQGLV----NRSDGTNMGMRGVCAVCGVEDIIPGYPWMGPEGDGDE 229
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A836CAL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL3_9STRA) HSP 1 Score: 295 bits (756), Expect = 1.520e-90 Identity = 160/245 (65.31%), Postives = 183/245 (74.69%), Query Frame = 1 Query: 124 KVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNRA--------------AANG-GNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNG 813 + +R ANDEY DAC ALA EHTRT DIEVLTD+C +AEH D MY+ELLH R + R S A+ R + ARVAEVI+PMRRQRMPP W+P RQR+QKHRKWR+NRR AGRRVVF GVAAR ARGRP IPTKAVVWQLACR ++M PEA TT+CC GCG+RT+PGG +HGHRNR A +G G +GLVVFNRDRSG TN+G+RGVCAV GVEDIIPGYPW EG+G Sbjct: 587 ETARRVANDEYNDACTALADEHTRTGDIEVLTDHCTAYAEHGDAMYEELLHAVRK-IQRFSHFRAQQR--AAARVAEVIAPMRRQRMPPGWKPRRQRRQKHRKWRSNRR---AGRRVVFFGVAARTPARGRPSIPTKAVVWQLACRAPVVMTPEAHTTVCCPGCGERTRPGGAEHGHRNRVCDSNLPHRICPIQEAVHGVGVRGLVVFNRDRSGATNIGVRGVCAVSGVEDIIPGYPWE--EGDG 823
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A836CEL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL4_9STRA) HSP 1 Score: 274 bits (700), Expect = 1.480e-87 Identity = 174/357 (48.74%), Postives = 190/357 (53.22%), Query Frame = 1 Query: 7 QVEHEEKELDAVLQRGNGQ------STQVGADPVGYGPAESRLRLKV--------------------------------------------------------------------SRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSARGRGLSVARVAEVISPMRRQRMPPEWRPIRQRKQKHRKWRTNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR------------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGNGDE 819 QV +E+K+L+AVLQ GNG +VGADPVGYGPA+SR+RLK +R TANDEYRDAC ALAGEHTRTCD+EVLTDY TFAEHEDG+YDELLHPARS V R SAR R +VARVAEV++P AVVWQLACRTVIIMVPEA TTI C GCGQRTQPGGEQHGHRNR AAANGG QGL+VFNR+RSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEG +E Sbjct: 69 QVGNEDKQLEAVLQGGNGVFRLEKVHREVGADPVGYGPADSRMRLKALNGVAVTVVNPGQVLAVSGAVAHGELWRRENAADFVLDPAIRRAEVLEVSGELYRTWALSILNEQKEAARRTANDEYRDACTALAGEHTRTCDVEVLTDYYTTFAEHEDGIYDELLHPARS-VQRFIRFSARQR--AVARVAEVMAP--------------------------------------------------------AVVWQLACRTVIIMVPEAFTTIRCPGCGQRTQPGGEQHGHRNRVCNLPHRVCPIQAAANGGKQGLMVFNRNRSGGTNMGMRGVCAVCGVEDIIPGYPWMGPEGERNE 366
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A835Z9D2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D2_9STRA) HSP 1 Score: 235 bits (599), Expect = 3.680e-67 Identity = 131/194 (67.53%), Postives = 139/194 (71.65%), Query Frame = -1 Query: 217 DRAHATHAHVGAAAAVAVEDHQPLIPAVRRC--------------TIPVAVLLAAWLSALATPRAADGGESLRHHDDDCTARQLPHHRLGGDGRTAARRHPCGDTKEHDAPSRTAVPAVGPPLAVLLFPLPYGSPFGRHPLPSHRRDHLRHPGD*QPSAAR*NG*MSEHSTPRRVQQLIVHAVLVLSEGDAVVG 756 DRAH THAHVG AAA+AV+DHQPLIP VR C TI VAVLLA WLSALATPRAA GGESLRHHDD+CTARQLPHHRLG +GRTA RRHPC DT+EH P VGPPLAVLLFP P GSPFGR PLPSHRR HLRHP D +P +TPR VQ L+VHAVLVLSEG AV G Sbjct: 867 DRAHDTHAHVGGAAALAVKDHQPLIPTVRGCLNGTDAVRQVGVAHTIRVAVLLAGWLSALATPRAAGGGESLRHHDDECTARQLPHHRLGENGRTAVRRHPCSDTEEHATP-------VGPPLAVLLFPRPSGSPFGRRPLPSHRRGHLRHPSD-RPLLRAQAETDESLNTPRSVQHLVVHAVLVLSEGGAVGG 1052
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Match: A0A836CJK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK5_9STRA) HSP 1 Score: 171 bits (434), Expect = 6.910e-45 Identity = 102/237 (43.04%), Postives = 139/237 (58.65%), Query Frame = 1 Query: 124 KVSRCTANDEYRDACKALAGEHTRTCDIEVLTDYCITFAEHEDGMYDELLHPARSGVFRHSSVSA-RGRGLSVARVAEVISPMRRQRMPPEWRPIR-------QRKQKHRKWR-TNRRDRCAGRRVVFLGVAARVAARGRPPIPTKAVVWQLACRTVIIMVPEALTTICCAGCGQRTQPGGEQHGHRNR-------AAANGGNQGLVVFNRDRSGGTNMGMRGVCAVCGVEDIIPGY 786 + R AN Y DA ALA HTRT +VL YC T+ H D M+ ELLHPAR RH S R + ++A++AE ++P+R Q PP W+ +R +R+++H++WR T+RR RR++F G A +RGR IP K +V QLACR +M P+ ++ C CGQ T+ GG++ GHRNR A A G+ V +RD + N+GMRGV A CGV+DIIPGY Sbjct: 576 EAQRRGANQAYSDALAALADRHTRTGRYQVLRAYCTTWGHHADAMWGELLHPAR----RHQRFSRFRAQQAAIAKMAEKLAPIRLQHRPPGWKHVRSRGRRYPRRRRRHKRWRDTHRRP----RRIIFFGACAHFPSRGRASIPIKKLVAQLACRCPTLMTPQPYSSASCLVCGQPTRGGGDEFGHRNRVCRNQNCALAQAAEGGVAVIDRDTNARANLGMRGVYATCGVDDIIPGY 804 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349490 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9109 ID=mRNA_9109|Name=jgi.p|Trimin1|349490|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_44:694064..695328+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCACAGGTTGAGCACGAGGAGAAGGAGCTGGACGCTGTGCTGCAGAGback to top protein sequence of jgi.p|Trimin1|349490 >Trimin1|349490|estExt_Genemark1.C_Ctg_440049 ID=Trimin1|349490|estExt_Genemark1.C_Ctg_440049|Name=jgi.p|Trimin1|349490|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp MSQVEHEEKELDAVLQRGNGQSTQVGADPVGYGPAESRLRLKVSRCTANDback to top mRNA from alignment at Contig_44:694064..695328+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9109 ID=mRNA_9109|Name=jgi.p|Trimin1|349490|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1265bp|location=Sequence derived from alignment at Contig_44:694064..695328+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_44:694064..695328+ >mRNA_9109 ID=mRNA_9109|Name=jgi.p|Trimin1|349490|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_44:694064..695328+ (Tribonema minus UTEX_B_3156 )back to top |