Trimin1|349485|estExt_Genemark1.C_Ctg_440036 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349485
Unique NameTrimin1|349485|estExt_Genemark1.C_Ctg_440036
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length224
Homology
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A835YUZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ7_9STRA)

HSP 1 Score: 419 bits (1076), Expect = 1.240e-147
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MVSSKARSVVLLVLAALAEVQGFASTCTVGSVGTRQHHSVASAGRLTCSTIGQRGSQRRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223
            MVSSKARSVVLLVLAALAEVQGFASTCTVGSVGTRQHHSVASAGRLTCSTIGQRGSQRRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF
Sbjct:    1 MVSSKARSVVLLVLAALAEVQGFASTCTVGSVGTRQHHSVASAGRLTCSTIGQRGSQRRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: D7G3C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C5_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 8.080e-37
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 0
Query:   76 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGP 222
            R L    Y+LP+LDG+  GR+V+ AVP +G  V+GVL PALAIW+ VPF+   +F+    + R  + SR +RF++QQAIL+DI  +VLGLL      VAP G        FY L+ AVAY++    +GK  N+IP+IS AA+ Q+GP
Sbjct:   17 RALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQIPLISAAAEIQLGP 163          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A6H5LCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCJ5_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.330e-35
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 0
Query:   76 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGP 222
            R L    Y+LP+LDG+  GR+V+ AVP +G  V+GVL PALAIW+ VPF+   +F+    + R  + SR +RF++QQAIL+DI  +VLGLL      VAP G        FY L+ AVAY++    +GK  N+IP+IS AA+ Q+GP
Sbjct:  158 RALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQIPLISAAAEIQLGP 304          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S0JI91_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI91_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 2.200e-34
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 0
Query:   58 RRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFAT-LQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223
            RR S   +++D  AP   RL    PY+LP LDG G G  +Y  VP   +A  G + P +A++  +PF G  +F+  +F  RN  LSRLVRF++QQA+L+DIALI+ GL   VT  + P    +  T L FY+ +  V Y+   N QGK P+++P++SEAA  QIGPF
Sbjct:   39 RRASNPALSADPPAPAVDRLFGTLPYLLPSLDGFGYGAYIYQNVPGAAQAA-GAVAPFVALFQSLPFAGLVLFIGLSFFTRNAGLSRLVRFNIQQALLLDIALIIPGLFSPVT-GLLPAELQIIGTNLVFYVCLFTVLYATWCNAQGKLPDQVPLLSEAALMQIGPF 203          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S0PYH6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYH6_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 7.190e-33
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 0
Query:   69 DSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223
            +  P   R+    PYILPVLDG G G  VY  VP  GE V GV+ P +A++  +PF G  +F+  +   RN  LSR+VRF++QQA+L+DIALI+ GL   VT  +      +     FY+ +  V YS  SN QG+ P+++P++SEAA  QIGP+
Sbjct:   39 EEVPAVDRVFGTLPYILPVLDGFGYGIYVYQNVPGAGE-VAGVIAPLVALFQSLPFAGIVLFIGLSLFTRNAGLSRMVRFNIQQALLLDIALIIPGLFSPVTSLLPLELQIIGTNFVFYVCVFTVIYSAWSNAQGELPDQVPVLSEAAMMQIGPY 192          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S2AKC4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKC4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.120e-32
Identity = 73/151 (48.34%), Postives = 95/151 (62.91%), Query Frame = 0
Query:   76 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIV---LGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223
            R+ AC PY+LP+LDG+  G  V+  VP  G     +LGP  AI N +PF G   FL  +  +RN  L+R VRFS+QQAILIDIALI+   +G L ++   ++P          FY LI+ ++YS+ SNL GK PN IP ISEAA+R IGPF
Sbjct:  198 RVFACLPYLLPMLDGLQYGNGVFQMVPGAGATASVILGPFAAIRNAIPFGGLIFFLILSSLSRNENLNRGVRFSMQQAILIDIALILPSLVGGLASIGGEISPVITTPAENFVFYFLIATISYSVGSNLLGKVPNGIPFISEAAERSIGPF 348          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S2K655_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K655_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.720e-32
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 0
Query:   62 GLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLEN-VTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223
            G+   +D+    + ++++C PYILP++DG   GR +Y   P +       LGP + I   VPF GFG+FL      RN ELSR +RF++QQAILIDIALI   L+ + ++K+      +      FY   +A  YS+ SNL GK P  IPIISEAA+R +GPF
Sbjct:    4 GMFDRNDEEVFGQEKIISCLPYILPLMDGDKFGRYIYMRFPPLHVLEQIFLGPLVRIDQAVPFFGFGLFLVLALGGRNPELSRSIRFNVQQAILIDIALIFPELIGSAMSKSTPMYLVEPCTNFVFYAYAAACGYSIFSNLTGKTPKGIPIISEAAERAVGPF 166          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S4ES88_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ES88_CHRCT)

HSP 1 Score: 122 bits (306), Expect = 6.840e-31
Identity = 71/160 (44.38%), Postives = 95/160 (59.38%), Query Frame = 0
Query:   65 MASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFAT-LQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223
            M   D AP   R+LA  PY+LP +DG   G  VY  VP +G A+ G   P +A +  +PF G   F+  +   RN  LSR VRF++QQA+L+DIALIV GL   +TK   P    +  T   FY  +  V Y+L SN QGK P+++P++S+AA  QIGPF
Sbjct:   64 MMRTDEAPALERVLATLPYVLPAIDGFAYGLYVYQNVPPIG-AIAGAAFPFVASFESIPFGGLVFFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLFGPLTKTF-PVELQILGTNFIFYAWVLVVGYALFSNAQGKAPDQVPLLSDAASMQIGPF 221          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S2XVV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV7_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.260e-30
Identity = 67/160 (41.88%), Postives = 95/160 (59.38%), Query Frame = 0
Query:   65 MASDD-SAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223
            MA DD S P + R+ A  PY LP+ D +  GR ++A  P + E +   +G    I+ GVPF+G  +FLAF+ A+R   + R  RFS+QQA+LIDIALI   L   + K +     +      FY   ++  YS++SN  GK PNEIP+IS++A+  IGPF
Sbjct:   59 MAQDDESVPIDERIFAILPYALPLSDSIEFGRFIFAEFPLLRELLDIFIGIFYDIYRGVPFIGLLIFLAFSVASRTPSIPRFARFSIQQALLIDIALIFPQLFGGLAKELPLSVVEPATNFVFYAAFASCTYSVISNALGKVPNEIPLISQSAETSIGPF 218          
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A1X6NJR3_PORUM (Tic20 family protein Ycf60 (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJR3_PORUM)

HSP 1 Score: 113 bits (282), Expect = 3.720e-28
Identity = 61/148 (41.22%), Postives = 91/148 (61.49%), Query Frame = 0
Query:   79 ACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLA-FTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGG--ADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223
            A  PY+LP+LDG+  GR V+   PA+   V   + P   ++ G PF  FG+F A +    RNT  SR VRF+ QQA+LID+ LI+  LL     A    G   +  ++  FY ++++V Y++VSNL+G+ P++IP +SEA + QIGP+
Sbjct:    2 ASAPYLLPLLDGLVFGRFVFERAPALAALVVPAVAPLFRLYRGTPFFAFGIFFALYVLIVRNTGFSRFVRFNTQQALLIDVVLILPQLLGGAVAAAGVPGWILEAGSSTIFYAVVASVVYAVVSNLRGETPDQIPGVSEAVEAQIGPY 149          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349485 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUZ7_9STRA1.240e-147100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G3C5_ECTSI8.080e-3746.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCJ5_9PHAE3.330e-3546.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0JI91_9EUKA2.200e-3443.71Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0PYH6_9EUKA7.190e-3343.87Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2AKC4_9STRA5.120e-3248.34Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2K655_9STRA7.720e-3242.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4ES88_CHRCT6.840e-3144.38Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2XVV7_9STRA1.260e-3041.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1X6NJR3_PORUM3.720e-2841.22Tic20 family protein Ycf60 (Fragment) n=1 Tax=Porp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 75..216
e-value: 7.7E-13
score: 48.6
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510PROTEIN TIC 20-II, CHLOROPLASTICcoord: 56..220
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 56..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:552510..557138 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349485mRNA_9097Tribonema minus UTEX_B_3156 mRNAContig_44 552501..557230 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349485|estExt_Genemark1.C_Ctg_440036 ID=Trimin1|349485|estExt_Genemark1.C_Ctg_440036|Name=jgi.p|Trimin1|349485|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp
MVSSKARSVVLLVLAALAEVQGFASTCTVGSVGTRQHHSVASAGRLTCST
IGQRGSQRRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAA
VPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSL
QQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSN
LQGKEPNEIPIISEAAQRQIGPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20