mRNA_9066 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166483
Unique NamemRNA_9066
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A835YUX7_9STRA (RECA_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.040e-38
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 189
            ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR
Sbjct:    1 ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 SERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 189
            + R  RLSFGC +LDA   GG+ + G+TE+ GEAG GKTQ CLQLLLQA L  E GG+GG+
Sbjct:   70 AARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGK 130
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.040e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 SERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 189
            + R  RLSFGC +LDA   GG+ + G+TE+ GEAG GKTQ CLQLLLQA L  E GG+GG+
Sbjct:   70 AARLDRLSFGCPSLDAAFEGGVRVQGITEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGK 130
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A7S3WN57_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WN57_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 3.720e-14
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   22 RLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGG 186
            RLS GCA +DA LGGG   HGLTE+ G AGTGKTQ  LQ +LQA LP   GG+GG
Sbjct:   25 RLSTGCARIDACLGGGFDAHGLTEIAGAAGTGKTQLVLQCMLQAQLPPAVGGLGG 79
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A6B2LKL6_9EUKA (RECA_2 domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LKL6_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 1.480e-13
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   22 RLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGG 186
            ++ FGC  LD  + GGLP  G+ EL GEAG+GKTQ  LQLLL  V P  HGG+ G
Sbjct:   10 KVPFGCPVLDGMMRGGLPSQGIIELTGEAGSGKTQLALQLLLSTVAPARHGGLEG 64
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A7S0NXI2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NXI2_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 1.550e-13
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   22 RLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGG 186
            +LS GC+ +D+ LGGGL  HGL E+ G++G GKTQ  LQLLL+A LP  +GG+GG
Sbjct:   29 KLSVGCSIIDSMLGGGLDTHGLVEVAGQSGAGKTQLALQLLLRAQLPPPYGGLGG 83
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A7S0LJT4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LJT4_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 4.410e-13
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   22 RLSFGCAALDANLGGGLPL-HGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGG 186
            +LS GC  LD  LGGG+   HG+ E+ G++G GK+Q  LQLLL+A LP+EHGG+ G
Sbjct:   27 QLSIGCPILDHLLGGGIETQHGIVEIAGQSGAGKSQLVLQLLLRAQLPIEHGGLAG 82
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: UPI0010A4662F (DNA repair protein XRCC3 homolog n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4662F)

HSP 1 Score: 70.9 bits (172), Expect = 5.210e-13
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGV 180
            +L  R  + + GC  LD  L GG+P + +TELV E+G+GKTQFCLQL+L A LP  HGG+
Sbjct:    6 LLQLRTEKCTVGCPVLDRFLAGGIPCNSMTELVAESGSGKTQFCLQLVLSAQLPPSHGGL 65
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A4D9B981_SALSN (RAD51-like protein 1 n=6 Tax=Salvia TaxID=21880 RepID=A0A4D9B981_SALSN)

HSP 1 Score: 70.9 bits (172), Expect = 7.940e-13
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   19 GRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 189
            G L  G   LDA L GG+P   +TELVG AG GKTQFCL+L L A LP  HGG+GGR
Sbjct:  115 GHLPTGLKGLDAALCGGIPFGVVTELVGPAGIGKTQFCLKLALLASLPTSHGGLGGR 171
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BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A196SPG9_BLAHN (DNA repair protein XRCC3-like protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SPG9_BLAHN)

HSP 1 Score: 69.7 bits (169), Expect = 1.320e-12
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   10 ERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 189
            +R+  L+ GC+++D  L GG+PLHG++E+VGEA  GKTQ  +QL + A+LP    GV G+
Sbjct:   18 QRKAFLTTGCSSIDICLKGGIPLHGISEIVGEASAGKTQLAIQLAINAILPCSERGVNGK 77
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUX7_9STRA1.040e-38100.00RECA_2 domain-containing protein n=1 Tax=Tribonema... [more]
D8LGE7_ECTSI1.800e-1560.66RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KY82_9PHAE2.040e-1560.66RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3WN57_EMIHU3.720e-1465.45Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A6B2LKL6_9EUKA1.480e-1356.36RECA_2 domain-containing protein n=2 Tax=Arcella i... [more]
A0A7S0NXI2_9EUKA1.550e-1358.18Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S0LJT4_9EUKA4.410e-1355.36Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
UPI0010A4662F5.210e-1353.33DNA repair protein XRCC3 homolog n=2 Tax=Prosopis ... [more]
A0A4D9B981_SALSN7.940e-1361.40RAD51-like protein 1 n=6 Tax=Salvia TaxID=21880 Re... [more]
A0A196SPG9_BLAHN1.320e-1248.33DNA repair protein XRCC3-like protein n=1 Tax=Blas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:105095..105286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166483|e_gw1.44.80.1
BRITEko00000,ko00001,ko03400
KEGG Pathwayko03440,map03440
KEGG koko:K10880
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042148,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
Preferred nameXRCC3
Descriptionmeiotic DNA recombinase assembly
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0468@1|root,KOG1564@2759|Eukaryota
Evalue2.96e-16
Seed ortholog2880.D8LGE7
Hectar predicted targeting categoryother localisation
TranscriptId166805
TrackFilteredModels1
ProteinId166483
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166483gene_9066Tribonema minus UTEX_B_3156 geneContig_44 105095..105286 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9066_1exon_9066_1Tribonema minus UTEX_B_3156 exonContig_44 105095..105286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9066CDS_9066Tribonema minus UTEX_B_3156 CDSContig_44 105095..105286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166483Trimin1|166483|e_gw1.44.80.1Tribonema minus UTEX_B_3156 polypeptideContig_44 105095..105286 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9066 ID=mRNA_9066|Name=jgi.p|Trimin1|166483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=192bp|location=Sequence derived from alignment at Contig_44:105095..105286+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCCTCAGCGAGCGGCGAGGCCGGCTGTCATTTGGCTGCGCGGCACTAGA
CGCCAATCTCGGTGGCGGGCTGCCACTGCACGGACTCACGGAGTTGGTGG
GGGAGGCGGGCACTGGAAAAACACAGTTCTGTCTGCAGCTCCTGCTGCAG
GCGGTGCTGCCGGTGGAGCACGGGGGTGTGGGGGGCAGGTGA
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protein sequence of jgi.p|Trimin1|166483

>Trimin1|166483|e_gw1.44.80.1 ID=Trimin1|166483|e_gw1.44.80.1|Name=jgi.p|Trimin1|166483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=64bp
ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQ
AVLPVEHGGVGGR*
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mRNA from alignment at Contig_44:105095..105286+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9066 ID=mRNA_9066|Name=jgi.p|Trimin1|166483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=192bp|location=Sequence derived from alignment at Contig_44:105095..105286+ (Tribonema minus UTEX_B_3156 )
ATCCTCAGCGAGCGGCGAGGCCGGCTGTCATTTGGCTGCGCGGCACTAGA
CGCCAATCTCGGTGGCGGGCTGCCACTGCACGGACTCACGGAGTTGGTGG
GGGAGGCGGGCACTGGAAAAACACAGTTCTGTCTGCAGCTCCTGCTGCAG
GCGGTGCTGCCGGTGGAGCACGGGGGTGTGGGGGGCAGGTGA
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Coding sequence (CDS) from alignment at Contig_44:105095..105286+

>mRNA_9066 ID=mRNA_9066|Name=jgi.p|Trimin1|166483|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=192bp|location=Sequence derived from alignment at Contig_44:105095..105286+ (Tribonema minus UTEX_B_3156 )
ATCCTCAGCGAGCGGCGAGGCCGGCTGTCATTTGGCTGCGCGGCACTAGA
CGCCAATCTCGGTGGCGGGCTGCCACTGCACGGACTCACGGAGTTGGTGG
GGGAGGCGGGCACTGGAAAAACACAGTTCTGTCTGCAGCTCCTGCTGCAG
GCGGTGCTGCCGGTGGAGCACGGGGGTGTGGGGGGCAGGTGA
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