mRNA_9129 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166481
Unique NamemRNA_9129
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166481 vs. uniprot
Match: A0A836CCF2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF2_9STRA)

HSP 1 Score: 327 bits (837), Expect = 2.890e-107
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1 
Query:    1 MLDLRDNRRVTELPDVYLSKLTQLQTLALGGCSRLKCIPEEVGKSRSLTALDLGGCYELALDNTWSAGVFASLRTLILGSRSEXXXXXXXXXXXXXXXXXXXXXXLTSIPDDISKLTKLTRLRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQLARGDFRENRFRDRLRVGGIDDLIPDLTDREGEQGKLTKLTLGGRLTSLPEAIGNLVTLTALSAAGCTEL 693
            MLDLRDNRRVTELPDVYLSKLTQLQTLALGGCSRLKCIPEEVGKSRSLTALDLGGCYELALDNTWSAGVFASLRTLILGSRSEXXXXXXXXXXXXXXXXXXXXXXLTSIPDDISKLTKLTRLRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQLARGDFRENRFRDRLRVGGIDDLIPDLTDREGEQGKLTKLTLGGRLTSLPEAIGNLVTLTALSAAGCTEL
Sbjct:    1 MLDLRDNRRVTELPDVYLSKLTQLQTLALGGCSRLKCIPEEVGKSRSLTALDLGGCYELALDNTWSAGVFASLRTLILGSRSEXXXXXXXXXXXXXXXXXXXXXXLTSIPDDISKLTKLTRLRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQLARGDFRENRFRDRLRVGGIDDLIPDLTDREGEQGKLTKLTLGGRLTSLPEAIGNLVTLTALSAAGCTEL 231
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166481 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CCF2_9STRA2.890e-107100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:860074..861126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166481|e_gw1.44.117.1
Descriptionresistance protein
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsCOG4886@1|root,2R41B@2759|Eukaryota,37TDP@33090|Viridiplantae,3GCY2@35493|Streptophyta,4JFD5@91835|fabids
Evalue0.000435
Seed ortholog225117.XP_009379642.1
Hectar predicted targeting categoryother localisation
TranscriptId166803
TrackFilteredModels1
ProteinId166481
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166481gene_9129Tribonema minus UTEX_B_3156 geneContig_44 860074..861126 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9129_1exon_9129_1Tribonema minus UTEX_B_3156 exonContig_44 860074..861126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9129CDS_9129Tribonema minus UTEX_B_3156 CDSContig_44 860074..861126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166481Trimin1|166481|e_gw1.44.117.1Tribonema minus UTEX_B_3156 polypeptideContig_44 860074..861126 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9129 ID=mRNA_9129|Name=jgi.p|Trimin1|166481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1053bp|location=Sequence derived from alignment at Contig_44:860074..861126- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGACTTGCGCGACAACCGTCGAGTGACGGAGTTGCCAGATGTGTA
CCTCAGCAAGCTCACTCAGCTCCAGACACTCGCGCTCGGCGGATGCAGCC
GGCTCAAATGCATACCGGAGGAGGTCGGCAAGTCGCGTTCCCTGACAGCC
CTGGATCTGGGGGGATGTTACGAGCTGGCATTGGACAATACATGGAGCGC
CGGCGTCTTCGCATCCCTGCGCACACTCATCTTGGGAAGCCGTAGCGAGG
CGCTGCCGGAATGGCTGTGGAAGGTCGCGACGTTAGAGACCCTGGACATA
GAAGGGTGCTTTCAGCTCACGTCCATTCCAGACGACATCAGCAAGTTGAC
AAAATTGACTCGTCTGAGGCTCGGCGGCGTGTTTCAGCGGGTGCCCGACG
CCATCGGAAACATGTTTGAGCTGAAGGAACTCAGCTTCTCAAAGTGCGAG
GCGCTCACGAGCCTGCCGGAGACAGTTGGTCAACTGGCGAGAGGCGATTT
CCGCGAAAACAGGTTTCGCGACCGCCTGAGAGTGGGCGGGATCGACGATC
TCATACCAGATCTGACAGATCGCGAAGGTGAGCAGGGCAAGCTCACCAAG
CTCACGTTAGGCGGGCGTCTGACGAGCCTGCCGGAGGCCATCGGCAACCT
GGTCACGTTGACGGCGCTCAGCGCCGCCGGATGCACCGAACTCACCCGGT
TGCCTGCATCTCTCATATACTTGAGGAACCTGGCGGAGCTCGACTTGACG
GGCTGTCTGGCGTTGAGCAGCTTGCCGGACAGGCTTGACCTGTTGCAAAA
GCTGACGGCGCTCACGCTGAGCAGGTGCGAGGGCCTCAAGAGACTTCCGC
AGTCGGTCGGCTTGTTGAAGAATCTCCAGTGCCTCGACGTGAGCGGATGC
ACCGCTCTGATCAGCCTTCCAGAGTCACTGGGTCAACTTGAGAACCTTGA
AAAGCTCGACCTCCGCAATTGCGACCGGGTGCACTGGCTTCCTGACTCCC
TGTACCGGCTCGTCGGCTTGAAGATGCTGGAGGTGAGAGGATGCTCAGGC
TTG
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protein sequence of jgi.p|Trimin1|166481

>Trimin1|166481|e_gw1.44.117.1 ID=Trimin1|166481|e_gw1.44.117.1|Name=jgi.p|Trimin1|166481|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=351bp
MLDLRDNRRVTELPDVYLSKLTQLQTLALGGCSRLKCIPEEVGKSRSLTA
LDLGGCYELALDNTWSAGVFASLRTLILGSRSEALPEWLWKVATLETLDI
EGCFQLTSIPDDISKLTKLTRLRLGGVFQRVPDAIGNMFELKELSFSKCE
ALTSLPETVGQLARGDFRENRFRDRLRVGGIDDLIPDLTDREGEQGKLTK
LTLGGRLTSLPEAIGNLVTLTALSAAGCTELTRLPASLIYLRNLAELDLT
GCLALSSLPDRLDLLQKLTALTLSRCEGLKRLPQSVGLLKNLQCLDVSGC
TALISLPESLGQLENLEKLDLRNCDRVHWLPDSLYRLVGLKMLEVRGCSG
L
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mRNA from alignment at Contig_44:860074..861126-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9129 ID=mRNA_9129|Name=jgi.p|Trimin1|166481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1053bp|location=Sequence derived from alignment at Contig_44:860074..861126- (Tribonema minus UTEX_B_3156 )
ATGCTCGACTTGCGCGACAACCGTCGAGTGACGGAGTTGCCAGATGTGTA
CCTCAGCAAGCTCACTCAGCTCCAGACACTCGCGCTCGGCGGATGCAGCC
GGCTCAAATGCATACCGGAGGAGGTCGGCAAGTCGCGTTCCCTGACAGCC
CTGGATCTGGGGGGATGTTACGAGCTGGCATTGGACAATACATGGAGCGC
CGGCGTCTTCGCATCCCTGCGCACACTCATCTTGGGAAGCCGTAGCGAGG
CGCTGCCGGAATGGCTGTGGAAGGTCGCGACGTTAGAGACCCTGGACATA
GAAGGGTGCTTTCAGCTCACGTCCATTCCAGACGACATCAGCAAGTTGAC
AAAATTGACTCGTCTGAGGCTCGGCGGCGTGTTTCAGCGGGTGCCCGACG
CCATCGGAAACATGTTTGAGCTGAAGGAACTCAGCTTCTCAAAGTGCGAG
GCGCTCACGAGCCTGCCGGAGACAGTTGGTCAACTGGCGAGAGGCGATTT
CCGCGAAAACAGGTTTCGCGACCGCCTGAGAGTGGGCGGGATCGACGATC
TCATACCAGATCTGACAGATCGCGAAGGTGAGCAGGGCAAGCTCACCAAG
CTCACGTTAGGCGGGCGTCTGACGAGCCTGCCGGAGGCCATCGGCAACCT
GGTCACGTTGACGGCGCTCAGCGCCGCCGGATGCACCGAACTCACCCGGT
TGCCTGCATCTCTCATATACTTGAGGAACCTGGCGGAGCTCGACTTGACG
GGCTGTCTGGCGTTGAGCAGCTTGCCGGACAGGCTTGACCTGTTGCAAAA
GCTGACGGCGCTCACGCTGAGCAGGTGCGAGGGCCTCAAGAGACTTCCGC
AGTCGGTCGGCTTGTTGAAGAATCTCCAGTGCCTCGACGTGAGCGGATGC
ACCGCTCTGATCAGCCTTCCAGAGTCACTGGGTCAACTTGAGAACCTTGA
AAAGCTCGACCTCCGCAATTGCGACCGGGTGCACTGGCTTCCTGACTCCC
TGTACCGGCTCGTCGGCTTGAAGATGCTGGAGGTGAGAGGATGCTCAGGC
TTG
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Coding sequence (CDS) from alignment at Contig_44:860074..861126-

>mRNA_9129 ID=mRNA_9129|Name=jgi.p|Trimin1|166481|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1053bp|location=Sequence derived from alignment at Contig_44:860074..861126- (Tribonema minus UTEX_B_3156 )
ATGCTCGACTTGCGCGACAACCGTCGAGTGACGGAGTTGCCAGATGTGTA
CCTCAGCAAGCTCACTCAGCTCCAGACACTCGCGCTCGGCGGATGCAGCC
GGCTCAAATGCATACCGGAGGAGGTCGGCAAGTCGCGTTCCCTGACAGCC
CTGGATCTGGGGGGATGTTACGAGCTGGCATTGGACAATACATGGAGCGC
CGGCGTCTTCGCATCCCTGCGCACACTCATCTTGGGAAGCCGTAGCGAGG
CGCTGCCGGAATGGCTGTGGAAGGTCGCGACGTTAGAGACCCTGGACATA
GAAGGGTGCTTTCAGCTCACGTCCATTCCAGACGACATCAGCAAGTTGAC
AAAATTGACTCGTCTGAGGCTCGGCGGCGTGTTTCAGCGGGTGCCCGACG
CCATCGGAAACATGTTTGAGCTGAAGGAACTCAGCTTCTCAAAGTGCGAG
GCGCTCACGAGCCTGCCGGAGACAGTTGGTCAACTGGCGAGAGGCGATTT
CCGCGAAAACAGGTTTCGCGACCGCCTGAGAGTGGGCGGGATCGACGATC
TCATACCAGATCTGACAGATCGCGAAGGTGAGCAGGGCAAGCTCACCAAG
CTCACGTTAGGCGGGCGTCTGACGAGCCTGCCGGAGGCCATCGGCAACCT
GGTCACGTTGACGGCGCTCAGCGCCGCCGGATGCACCGAACTCACCCGGT
TGCCTGCATCTCTCATATACTTGAGGAACCTGGCGGAGCTCGACTTGACG
GGCTGTCTGGCGTTGAGCAGCTTGCCGGACAGGCTTGACCTGTTGCAAAA
GCTGACGGCGCTCACGCTGAGCAGGTGCGAGGGCCTCAAGAGACTTCCGC
AGTCGGTCGGCTTGTTGAAGAATCTCCAGTGCCTCGACGTGAGCGGATGC
ACCGCTCTGATCAGCCTTCCAGAGTCACTGGGTCAACTTGAGAACCTTGA
AAAGCTCGACCTCCGCAATTGCGACCGGGTGCACTGGCTTCCTGACTCCC
TGTACCGGCTCGTCGGCTTGAAGATGCTGGAGGTGAGAGGATGCTCAGGC
TTG
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