mRNA_9130 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|166387
Unique Name	mRNA_9130
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|166387 vs. uniprot
Match: A0A836CBU3_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.890e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

Query:    1 MRAHTGNAEVQRWTVALAAAGVCGAVVAVMRAHAGTADVQQRAAWAVANLCDAHPTNRTAF 183
            MRAHTGNAEVQRWTVALAAAGVCGAVVAVMRAHAGTADVQQRAAWAVANLCDAHPTNRTAF
Sbjct:    1 MRAHTGNAEVQRWTVALAAAGVCGAVVAVMRAHAGTADVQQRAAWAVANLCDAHPTNRTAF 61

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|166387 vs. uniprot

BLAST of jgi.p|Trimin1|166387 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CBU3_9STRA	8.890e-29	100.00	Armadillo-type protein (Fragment) n=1 Tax=Tribonem...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_44	contig	Contig_44:862105..863046 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|166387\|e_gw1.44.82.1
Hectar predicted targeting category	signal peptide
TranscriptId	166709
Track	FilteredModels1
ProteinId	166387

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|166387	gene_9130	Tribonema minus UTEX_B_3156	gene	Contig_44 862105..863046 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9130_1	exon_9130_1	Tribonema minus UTEX_B_3156	exon	Contig_44 862105..863046 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9130	CDS_9130	Tribonema minus UTEX_B_3156	CDS	Contig_44 862105..863046 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|166387	Trimin1\|166387\|e_gw1.44.82.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_44 862105..863046 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_44:862105..863046-
coding sequence from alignment at Contig_44:862105..863046-

spliced messenger RNA

>mRNA_9130 ID=mRNA_9130|Name=jgi.p|Trimin1|166387|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_44:862105..863046- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCTCACACGGGGAATGCGGAGGTACAGCGGTGGACGGTCGCGCT
CGCAGCCGCTGGGGTGTGCGGTGCGGTTGTGGCGGTCATGCGCGCTCACG
CGGGGACTGCGGATGTGCAGCAGCGGGCGGCGTGGGCGGTGGCGAACCTC
TGTGATGCCCACCCTACCAACAGAACGGCGTTCGCCAACGCTGGGGTGAG
CGAACCACTCGTGGCGGCCATGCACACTCACGCTGGGAATGCGGATGTGC
AGCAGCAGGCGGCGTGGGCGGTGGCAAACCTCTGTGTTGCCCACCCTGCC
AACAGAACGGCGTTCGCAAACGCTGGGGTGAGCAAACCACTTGTGGCGGC
CATGCGCGCTCACGCTGAGAATGCGGATGTGCAGCAGCAGGCAGCTCGGG
CGGTTGCAAACCTCTGTGCTGCCCACCCTGCTAACAGAACGGCATTCGCC
GACGCTGGGGTAAGCGAACCACTTGTGGCGGCCATGCGCGCTCACGGCGA
GAATGCGGAGGTGCAGGCGCGGGTGGCTCAGGCGGTGGCGAACCTCTGTG
CTGCCCACCCTGCTAACAGAACGGCGTTCGCCGACGCTGGGGTGAGCGAA
CCACTTGTGGCGGCCATGCACACTCACGCGGAGAATGCGGAGGTACAGCA
GCAGGCGGCTCGCGCGGTGGCATACCTGTGTGATGCCCACCCTGCCAACA
GCACGGCGCTTGTCGACGCTGGGGTGTGCGAACTACTTGTGGCAGCAATG
AGCGGTCACGCTGGGAATGCGGAGGTGCAGCGGTGGACGACGCAAGCGGT
GGCGAGCCTCTGTTTTGGCAACCCCGCCAACAGGACCGCGCTCGCCGACG
CTGGGGTGTGCGAAGTACTTGTGGCGGCCATGCGCGCTCACGCAGGGAAT
GCGGAGGTTCAGCTGTGCGCGGCGGGGGCTGTGGCATACCTG

protein sequence of jgi.p|Trimin1|166387

>Trimin1|166387|e_gw1.44.82.1 ID=Trimin1|166387|e_gw1.44.82.1|Name=jgi.p|Trimin1|166387|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=314bp
MRAHTGNAEVQRWTVALAAAGVCGAVVAVMRAHAGTADVQQRAAWAVANL
CDAHPTNRTAFANAGVSEPLVAAMHTHAGNADVQQQAAWAVANLCVAHPA
NRTAFANAGVSKPLVAAMRAHAENADVQQQAARAVANLCAAHPANRTAFA
DAGVSEPLVAAMRAHGENAEVQARVAQAVANLCAAHPANRTAFADAGVSE
PLVAAMHTHAENAEVQQQAARAVAYLCDAHPANSTALVDAGVCELLVAAM
SGHAGNAEVQRWTTQAVASLCFGNPANRTALADAGVCEVLVAAMRAHAGN
AEVQLCAAGAVAYL

mRNA from alignment at Contig_44:862105..863046-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9130 ID=mRNA_9130|Name=jgi.p|Trimin1|166387|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_44:862105..863046- (Tribonema minus UTEX_B_3156 )
ATGCGCGCTCACACGGGGAATGCGGAGGTACAGCGGTGGACGGTCGCGCT
CGCAGCCGCTGGGGTGTGCGGTGCGGTTGTGGCGGTCATGCGCGCTCACG
CGGGGACTGCGGATGTGCAGCAGCGGGCGGCGTGGGCGGTGGCGAACCTC
TGTGATGCCCACCCTACCAACAGAACGGCGTTCGCCAACGCTGGGGTGAG
CGAACCACTCGTGGCGGCCATGCACACTCACGCTGGGAATGCGGATGTGC
AGCAGCAGGCGGCGTGGGCGGTGGCAAACCTCTGTGTTGCCCACCCTGCC
AACAGAACGGCGTTCGCAAACGCTGGGGTGAGCAAACCACTTGTGGCGGC
CATGCGCGCTCACGCTGAGAATGCGGATGTGCAGCAGCAGGCAGCTCGGG
CGGTTGCAAACCTCTGTGCTGCCCACCCTGCTAACAGAACGGCATTCGCC
GACGCTGGGGTAAGCGAACCACTTGTGGCGGCCATGCGCGCTCACGGCGA
GAATGCGGAGGTGCAGGCGCGGGTGGCTCAGGCGGTGGCGAACCTCTGTG
CTGCCCACCCTGCTAACAGAACGGCGTTCGCCGACGCTGGGGTGAGCGAA
CCACTTGTGGCGGCCATGCACACTCACGCGGAGAATGCGGAGGTACAGCA
GCAGGCGGCTCGCGCGGTGGCATACCTGTGTGATGCCCACCCTGCCAACA
GCACGGCGCTTGTCGACGCTGGGGTGTGCGAACTACTTGTGGCAGCAATG
AGCGGTCACGCTGGGAATGCGGAGGTGCAGCGGTGGACGACGCAAGCGGT
GGCGAGCCTCTGTTTTGGCAACCCCGCCAACAGGACCGCGCTCGCCGACG
CTGGGGTGTGCGAAGTACTTGTGGCGGCCATGCGCGCTCACGCAGGGAAT
GCGGAGGTTCAGCTGTGCGCGGCGGGGGCTGTGGCATACCTG

Coding sequence (CDS) from alignment at Contig_44:862105..863046-

>mRNA_9130 ID=mRNA_9130|Name=jgi.p|Trimin1|166387|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=942bp|location=Sequence derived from alignment at Contig_44:862105..863046- (Tribonema minus UTEX_B_3156 )
ATGCGCGCTCACACGGGGAATGCGGAGGTACAGCGGTGGACGGTCGCGCT
CGCAGCCGCTGGGGTGTGCGGTGCGGTTGTGGCGGTCATGCGCGCTCACG
CGGGGACTGCGGATGTGCAGCAGCGGGCGGCGTGGGCGGTGGCGAACCTC
TGTGATGCCCACCCTACCAACAGAACGGCGTTCGCCAACGCTGGGGTGAG
CGAACCACTCGTGGCGGCCATGCACACTCACGCTGGGAATGCGGATGTGC
AGCAGCAGGCGGCGTGGGCGGTGGCAAACCTCTGTGTTGCCCACCCTGCC
AACAGAACGGCGTTCGCAAACGCTGGGGTGAGCAAACCACTTGTGGCGGC
CATGCGCGCTCACGCTGAGAATGCGGATGTGCAGCAGCAGGCAGCTCGGG
CGGTTGCAAACCTCTGTGCTGCCCACCCTGCTAACAGAACGGCATTCGCC
GACGCTGGGGTAAGCGAACCACTTGTGGCGGCCATGCGCGCTCACGGCGA
GAATGCGGAGGTGCAGGCGCGGGTGGCTCAGGCGGTGGCGAACCTCTGTG
CTGCCCACCCTGCTAACAGAACGGCGTTCGCCGACGCTGGGGTGAGCGAA
CCACTTGTGGCGGCCATGCACACTCACGCGGAGAATGCGGAGGTACAGCA
GCAGGCGGCTCGCGCGGTGGCATACCTGTGTGATGCCCACCCTGCCAACA
GCACGGCGCTTGTCGACGCTGGGGTGTGCGAACTACTTGTGGCAGCAATG
AGCGGTCACGCTGGGAATGCGGAGGTGCAGCGGTGGACGACGCAAGCGGT
GGCGAGCCTCTGTTTTGGCAACCCCGCCAACAGGACCGCGCTCGCCGACG
CTGGGGTGTGCGAAGTACTTGTGGCGGCCATGCGCGCTCACGCAGGGAAT
GCGGAGGTTCAGCTGTGCGCGGCGGGGGCTGTGGCATACCTG