Trimin1|349460|estExt_Genemark1.C_Ctg_430052 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349460
Unique NameTrimin1|349460|estExt_Genemark1.C_Ctg_430052
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length193
Homology
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: A0A835Z0K4_9STRA (tRNA specific adenosine deaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K4_9STRA)

HSP 1 Score: 385 bits (989), Expect = 2.130e-135
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MGGDGFDERVHKHMAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRSVTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKAQAAEAMTPNAAALSMGM 192
            MGGDGFDERVHKHMAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRSVTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKAQAAEAMTPNAAALSMGM
Sbjct:    1 MGGDGFDERVHKHMAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRSVTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKAQAAEAMTPNAAALSMGM 192          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: A0A6H5KRM5_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRM5_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 4.300e-47
Identity = 89/172 (51.74%), Postives = 118/172 (68.60%), Query Frame = 0
Query:    7 DERVHKHMAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAID---RALAEGRSVTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKA 175
            DE+   +M +AL+ AE AL  GEVPVGCV+V            H+     ++++ GHNET+   NATRHAELVAID   RA  +   ++ C+LFVTCEPCIMCAAAL  + I  V FGC NDRFGGCGS++SVH+GS +  + HTYP  +GL  ++A+ALF++FY+R+N KA
Sbjct:   11 DEQNAVYMRLALKEAEMALSKGEVPVGCVVV------------HKPTA--RIISCGHNETSEAFNATRHAELVAIDGILRAQTDLCLLSECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGS-LPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKA 167          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: A0A7S3K4N7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4N7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 5.800e-44
Identity = 81/163 (49.69%), Postives = 108/163 (66.26%), Query Frame = 0
Query:   14 MAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRSVTG--CELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGK 174
            M  A+E A+ ALQ GEVPVGC+ V     +               +A GHNETN T N TRHAELVAID+A+++  ++    CEL+VTCEPCIMCA+AL+Q+GIGR+YFGC ND+FGGCGSI+S+H  +        Y    G  K++A+ LF++FYAR+N +
Sbjct:   13 MERAIEEAKKALQCGEVPVGCIFVSEKNLE---------------IACGHNETNETLNPTRHAELVAIDKAISKYDNIDWKRCELYVTCEPCIMCASALAQIGIGRIYFGCRNDKFGGCGSILSIHNDN--------YECHEGFCKDEAICLFQQFYARDNSR 152          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: A0A482UKK3_9ARCH (Nucleoside deaminase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UKK3_9ARCH)

HSP 1 Score: 150 bits (380), Expect = 3.900e-43
Identity = 82/171 (47.95%), Postives = 113/171 (66.08%), Query Frame = 0
Query:    8 ERVHKHMAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRSVTG---CELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKA 175
            + V   M +A++ AE A++  EVPVGCV V     D  T          +V+  G N+TN+T NATRHAELVAID  L+ G SV     C+L+VTCEPCIMCAAAL+++ I +V+FGC+NDRFGG GSI+ +H   +    AH Y V +G+ K++A+ +F++FY REN +A
Sbjct:    2 DEVKNFMKLAIQQAEIAIEHSEVPVGCVFV-----DRTTK---------EVLGSGFNQTNLTLNATRHAELVAIDAILSHGHSVEAFKNCDLYVTCEPCIMCAAALAKLQIAKVFFGCHNDRFGGNGSILHIHTNPYGN--AHAYDVESGVLKDEAIEIFQRFYDRENERA 156          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: B8BW62_THAPS (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW62_THAPS)

HSP 1 Score: 149 bits (377), Expect = 1.740e-42
Identity = 85/170 (50.00%), Postives = 105/170 (61.76%), Query Frame = 0
Query:   14 MAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRS----------VTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVH-EGSHMAPAAHTYPVVTGLRKEDAVALFRKFYAREN 172
            M  AL +A  AL  GEVPVGC++   A                 +V+ G N+ N T +ATRHAE+VAIDR L +GRS             C+L+VTCEPCIMCAAALS MGIGRV+FGC NDRFGGCGSI+ +H E +  +   H + +  GL +E+AVAL R FY REN
Sbjct:    6 MRQALCVARTALDIGEVPVGCIVPYMASHSV-------------IVSHGANQVNATRDATRHAEIVAIDRMLTKGRSSDQLKLPPEIFANCDLYVTCEPCIMCAAALSVMGIGRVFFGCRNDRFGGCGSILHLHKEDTLQSSKHHGFTIHGGLLEEEAVALLRSFYDREN 162          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: A0A7S4PNQ5_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNQ5_GUITH)

HSP 1 Score: 149 bits (375), Expect = 3.290e-42
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = 0
Query:   14 MAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEG-------RSVTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAH--TYPVVTGLRKEDAVALFRKFYARENGKA 175
            MA+A E A+ AL+ GEVPVGCV+VR                G  V+A GHN+TN   +ATRHAE+VAID  + EG       + + GC L+VTCEPCIMCA+AL+ +G+ R  FGC ND+FGG GS++ +HE      A    +Y V  G+ +++A+ LF+KFYAREN KA
Sbjct:    3 MALAEEEAKKALEEGEVPVGCVMVR----------------GGVVIARGHNKTNERMDATRHAEMVAIDSLVEEGGDNLWAQQLLAGCTLYVTCEPCIMCASALAMLGLERAVFGCCNDKFGGNGSVMCMHESDSQLRAVGFASYQVRAGVHEQEAIELFKKFYARENSKA 157          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: A0A7S3BZ53_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BZ53_9EUKA)

HSP 1 Score: 149 bits (376), Expect = 3.840e-42
Identity = 90/171 (52.63%), Postives = 110/171 (64.33%), Query Frame = 0
Query:   11 HKHMAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRS----VTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMA--PAAHTYPVVTGLRKEDAVALFRKFYARENGKA 175
            H+ M  AL+ AEAAL+A EVPVGCV        AH  PDH       V+  GHN T  +CN TRHAEL AID+ L   R     V  C LFVT EPCIMCA+AL Q+GI +V FGC ND+FGGCGS++SVH+ S +A  P A  +    G+R ++AVAL R+FYA+EN  A
Sbjct:    5 HELMGQALDEAEAALRANEVPVGCVF-------AH--PDHG------VIGRGHNNTVASCNGTRHAELEAIDQMLLRDRQPLEVVAACTLFVTVEPCIMCASALRQLGIRQVVFGCGNDKFGGCGSVLSVHDCSMVARKPMAARH----GVRSDEAVALLRRFYAQENQSA 156          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: A0A1V9ZSH1_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSH1_9STRA)

HSP 1 Score: 147 bits (372), Expect = 7.120e-42
Identity = 84/163 (51.53%), Postives = 101/163 (61.96%), Query Frame = 0
Query:   14 MAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRS---VTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHT-YPVVTGLRKEDAVALFRKFYAREN 172
            MA AL   E AL+ GEVPVGCV V                L  +V+  G N TN  CNAT+HAELVAI+  LA+GRS      C L+VTCEPCIMCAAAL+ + I  V FGC+NDRFGG GSI S+HE + +    H  YP+ TG+ K +AVAL + FY R N
Sbjct:    8 MAEALREGEKALERGEVPVGCVFV----------------LDGRVIGRGGNRTNELCNATKHAELVAIEAILADGRSPEVFRDCTLYVTCEPCIMCAAALALLHIKNVVFGCHNDRFGGNGSIFSLHEPTALPDPEHVGYPITTGVMKNEAVALLKNFYDRGN 154          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: A0A7S0LKG3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LKG3_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 9.450e-42
Identity = 88/170 (51.76%), Postives = 106/170 (62.35%), Query Frame = 0
Query:   11 HKHMAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRALA-EGRS---VTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAH-TYPVVTGLRKEDAVALFRKFYARENGKA 175
            H HM  AL+ AEAAL A EVPVGCV V                L D V+A GHN T  +CN TRHAEL AIDR L  +GRS      C L+VT EPC+MCA+AL Q+ I  V FG  ND+FGGCGS++++H  S      H +YPV  G+RKE+AVAL R FYA +N +A
Sbjct:   17 HVHMGTALQEAEAALAAQEVPVGCVFVH---------------LRDGVLAGGHNNTVASCNGTRHAELEAIDRILLRDGRSPAVFAECTLYVTVEPCLMCASALRQLHIAHVVFGASNDKFGGCGSVLNIH--SDNPGGRHPSYPVTKGVRKEEAVALLRLFYAHQNDRA 169          
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Match: F0Y155_AURAN (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y155_AURAN)

HSP 1 Score: 145 bits (367), Expect = 4.440e-41
Identity = 88/174 (50.57%), Postives = 110/174 (63.22%), Query Frame = 0
Query:   14 MAMALELAEAAL-QAGEVPVGCVIVRSAGEDAHTSPDHRAALGDQVVAVGHNETNMTCNATRHAELVAIDRAL----AEGRSV--TGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKAQAAEA 180
            M  ALELAE A+ + GEVPVGCV V                  +  +A   NETN    ATRHAELVAID AL    A G+ +  T C L+VTCEPCIMCA+ALSQ+GI + YFGC ND+FGGCGSI+S+HEG+        + +V GLR+ +AV LFR+FY REN +   ++A
Sbjct:    1 MRRALELAEDAVAEQGEVPVGCVFVND---------------NNVEIASAANETNEAMCATRHAELVAIDGALKHSAARGQPLDWTRCALYVTCEPCIMCASALSQLGIAKCYFGCRNDKFGGCGSILSLHEGN--------FDIVEGLREAEAVDLFRRFYDRENSRTLGSDA 151          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349460 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0K4_9STRA2.130e-135100.00tRNA specific adenosine deaminase n=1 Tax=Tribonem... [more]
A0A6H5KRM5_9PHAE4.300e-4751.74CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S3K4N7_9STRA5.800e-4449.69Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A482UKK3_9ARCH3.900e-4347.95Nucleoside deaminase n=1 Tax=archaeon TaxID=190666... [more]
B8BW62_THAPS1.740e-4250.00CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S4PNQ5_GUITH3.290e-4247.95Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]
A0A7S3BZ53_9EUKA3.840e-4252.63Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A1V9ZSH1_9STRA7.120e-4251.53CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S0LKG3_9EUKA9.450e-4251.76Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
F0Y155_AURAN4.440e-4150.57CMP/dCMP-type deaminase domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.140.10Cytidine Deaminase, domain 2coord: 6..186
e-value: 3.9E-52
score: 178.4
NoneNo IPR availablePIRSRPIRSR006769-1PIRSR006769-1coord: 11..125
e-value: 4.4E-8
score: 30.2
NoneNo IPR availablePIRSRPIRSR006769-3PIRSR006769-3coord: 11..125
e-value: 4.4E-8
score: 30.2
NoneNo IPR availablePIRSRPIRSR006019-2PIRSR006019-2coord: 31..120
e-value: 2.2E-12
score: 44.6
NoneNo IPR availablePIRSRPIRSR006019-1PIRSR006019-1coord: 31..120
e-value: 2.2E-12
score: 44.6
NoneNo IPR availablePANTHERPTHR11079CYTOSINE DEAMINASE FAMILY MEMBERcoord: 8..178
NoneNo IPR availablePANTHERPTHR11079:SF149TRNA-SPECIFIC ADENOSINE DEAMINASE 2coord: 8..178
NoneNo IPR availableCDDcd01285nucleoside_deaminasecoord: 27..133
e-value: 6.7351E-31
score: 106.932
IPR002125Cytidine and deoxycytidylate deaminase domainPFAMPF00383dCMP_cyt_deam_1coord: 11..121
e-value: 1.2E-19
score: 70.0
IPR002125Cytidine and deoxycytidylate deaminase domainPROSITEPS51747CYT_DCMP_DEAMINASES_2coord: 8..132
score: 25.373381
IPR016192APOBEC/CMP deaminase, zinc-bindingPROSITEPS00903CYT_DCMP_DEAMINASES_1coord: 75..110
IPR016193Cytidine deaminase-likeSUPERFAMILY53927Cytidine deaminase-likecoord: 9..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_43contigContig_43:740134..749720 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349460mRNA_13765Tribonema minus UTEX_B_3156 mRNAContig_43 740134..749720 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349460|estExt_Genemark1.C_Ctg_430052 ID=Trimin1|349460|estExt_Genemark1.C_Ctg_430052|Name=jgi.p|Trimin1|349460|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=193bp
MGGDGFDERVHKHMAMALELAEAALQAGEVPVGCVIVRSAGEDAHTSPDH
RAALGDQVVAVGHNETNMTCNATRHAELVAIDRALAEGRSVTGCELFVTC
EPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYP
VVTGLRKEDAVALFRKFYARENGKAQAAEAMTPNAAALSMGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002125CMP_dCMP_dom
IPR016192APOBEC/CMP_deaminase_Zn-bd
IPR016193Cytidine_deaminase-like