mRNA_19023 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354707
Unique NamemRNA_19023
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A835YSF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF1_9STRA)

HSP 1 Score: 405 bits (1041), Expect = 2.080e-141
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1 
Query:  121 MDATTLKLRSRMEAGGESLPYHCHLHGMFQHKRHEHVAKRALIESQLWAWGEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREAATAFRETKYRALRLEAALEAAYSKKKLLQARIAELESKLQQVQQLLQRELATVSTQVELAPVCSAXXXXXXXXXXXXXXXXXLHEALTAAPAAAPSSTRAGNKGARGGGDIRPYDSCTYGTKAQDDVKVPVWCLTFAYNIRIG 807
            MDATTLKLRSRMEAGGESLPYHCHLHGMFQHKRHEHVAKRALIESQLWAWGEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREAATAFRETKYRALRLEAALEAAYSKKKLLQARIAELESKLQQVQQLLQRELATVSTQVELAPVCSAXXXXXXXXXXXXXXXXXLHEALTAAPAAAPSSTRAGNKGARGGGDIRPYDSCTYGTKAQDDVKVPVWCLTFAYNIRIG
Sbjct:    1 MDATTLKLRSRMEAGGESLPYHCHLHGMFQHKRHEHVAKRALIESQLWAWGEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREAATAFRETKYRALRLEAALEAAYSKKKLLQARIAELESKLQQVQQLLQRELATVSTQVELAPVCSAXXXXXXXXXXXXXXXXXLHEALTAAPAAAPSSTRAGNKGARGGGDIRPYDSCTYGTKAQDDVKVPVWCLTFAYNIRIG 229
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BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A835ZGW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW1_9STRA)

HSP 1 Score: 322 bits (826), Expect = 1.250e-100
Identity = 191/197 (96.95%), Postives = 194/197 (98.48%), Query Frame = 1 
Query:  121 MDATTLKLRSRMEAGGESLPYHCHLHGMFQHKRHEHVAKRALIESQLWAWGEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREAATAFRETKYRALRLEAALEAAYSKKKLLQARIAELESKLQQVQQLLQRELATVSTQVELAPVCSAXXXXXXXXXXXXXXXXXLHEALTAAPAAAPSSTRAGNKGARGGGDI 711
            MDATTLKLRSRMEAGGESLPYHCHLHGMFQHKRHEHVAKRALIE QLWAWGEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREAATAFRETKYRA+RLEAALEAAYSKKKLLQARIAELESKLQQVQQL QRELATVSTQVELAPVCS XXXXXXXXXXXXXXXXXLHEALTAAPAAAPSSTRAG+KGARGGGD+
Sbjct:    1 MDATTLKLRSRMEAGGESLPYHCHLHGMFQHKRHEHVAKRALIEPQLWAWGEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREAATAFRETKYRAIRLEAALEAAYSKKKLLQARIAELESKLQQVQQLPQRELATVSTQVELAPVCSXXXXXXXXXXXXXXXXXXLHEALTAAPAAAPSSTRAGDKGARGGGDM 197
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BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A836CGY8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGY8_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.000e-49
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = 1 
Query:  154 MEAGGESLPYHCHLHGMF--QHKRHEHVAKRALIESQLWAWGEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREA--ATAFRETKYRALRLEAALEAAYSKKKLLQARIAELESKLQQVQQL 513
            MEA GESLPYHCHL+G++  Q+K HEHV KRAL ESQLWAWGEPMLD+LDLAG SGV  TEVLGMHD ELHSKLREA  ATAFRETK++A+ LEAAL+AA SK+ LLQ RIAEL+S+LQQVQQL
Sbjct:    1 MEARGESLPYHCHLYGIYKLQNKWHEHVVKRALTESQLWAWGEPMLDLLDLAGRSGVFFTEVLGMHDDELHSKLREALAATAFRETKFKAICLEAALKAANSKETLLQTRIAELDSELQQVQQL 124
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BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A835Z351_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z351_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.370e-14
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:  118 SMDATTLKLRSRMEAGGESLPYHCHLH--GMFQHKRHEHVAKRALIESQLWAWGEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREAATAFRETKYRALRLE 423
            SMDATTLK+ S MEAGGES   H H       QH+      +RAL+ SQL  WGE +L +L LA CS VSV   L M D +L +KLREAATAF + K +  +LE
Sbjct:    9 SMDATTLKMESSMEAGGESSRCHGHYSTTAESQHQWDAVKNRRALVHSQLQQWGEELLKLLKLADCSDVSVQ--LDMSDLQLRTKLREAATAFADAKCQGDQLE 110
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BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A835Z9F0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.580e-7
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:  712 RPYDSCTYGTKAQDDVKVPVWCLTFA 789
            RPYDSCT GTKAQDDVKVPVWCLTFA
Sbjct:    9 RPYDSCTNGTKAQDDVKVPVWCLTFA 34
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BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A836CCC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.310e-6
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:  708 AKVKHHTGTLTSSWAFVPYVQESYGRM 788
            AKVKHHTGTLTSSWAFVP+VQESYGR+
Sbjct:  111 AKVKHHTGTLTSSWAFVPFVQESYGRL 137
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BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A835YMI5_9STRA (Uncharacterized protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.390e-6
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:  708 AKVKHHTGTLTSSWAFVPYVQESYGRM 788
            AKVKHHTGTLTSSWAFVP+VQESYGR+
Sbjct:  149 AKVKHHTGTLTSSWAFVPFVQESYGRL 175
[Close]
BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A835ZF31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF31_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.870e-6
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:  708 AKVKHHTGTLTSSWAFVPYVQESYGRM 788
            AKVKHHTGTLTSSWAFVP+VQESYGR+
Sbjct:  199 AKVKHHTGTLTSSWAFVPFVQESYGRL 225
[Close]
BLAST of jgi.p|Trimin1|354707 vs. uniprot
Match: A0A836CGZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-5
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:  708 AKVKHHTGTLTSSWAFVPYVQESYGRM 788
            AKVKHHTGTLTSSWAFVP+VQE+YGR+
Sbjct:  316 AKVKHHTGTLTSSWAFVPFVQETYGRL 342
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354707 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YSF1_9STRA2.080e-141100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGW1_9STRA1.250e-10096.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGY8_9STRA1.000e-4977.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z351_9STRA1.370e-1451.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9F0_9STRA5.580e-796.15Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CCC9_9STRA1.310e-692.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMI5_9STRA2.390e-692.59Uncharacterized protein n=5 Tax=Tribonema minus Ta... [more]
A0A835ZF31_9STRA2.870e-692.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGZ3_9STRA1.110e-588.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_429contigContig_429:2339..3732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354707|estExt_Genemark1.C_Ctg_4290001
Hectar predicted targeting categoryother localisation
TranscriptId355029
TrackFilteredModels1
ProteinId354707
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354707gene_19023Tribonema minus UTEX_B_3156 geneContig_429 2339..3732 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19023_1exon_19023_1Tribonema minus UTEX_B_3156 exonContig_429 2339..3048 +
exon_19023_2exon_19023_2Tribonema minus UTEX_B_3156 exonContig_429 3633..3732 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_19023UTR5_19023Tribonema minus UTEX_B_3156 five_prime_UTRContig_429 2339..2458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19023CDS_19023Tribonema minus UTEX_B_3156 CDSContig_429 2459..3048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354707Trimin1|354707|estExt_Genemark1.C_Ctg_4290001Tribonema minus UTEX_B_3156 polypeptideContig_429 2459..3732 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19023 ID=mRNA_19023|Name=jgi.p|Trimin1|354707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_429:2339..3732+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTTTCATTAGGAGTGGAGCCTTGCCGCTCATCTCTTGTTAGCAGCA
GCTCGTCCTGCTCTCTACGTTACCTACAGCAGCAGCACAACAGCAACAGC
ACTGCTAACTCAGTAACAGCATGGACGCCACCACCCTCAAGCTGCGCTCG
AGAATGGAGGCGGGGGGGGAGAGTCTACCCTACCACTGTCACCTCCACGG
CATGTTTCAACACAAGCGGCACGAGCATGTCGCTAAGCGTGCTCTGATCG
AGTCACAACTTTGGGCGTGGGGAGAGCCGATGCTCGACGTACTGGATCTG
GCCGGCTGCAGTGGCGTTTCTGTTACGGAGGTGCTGGGCATGCACGACTT
CGAGCTGCACAGCAAGTTGCGCGAGGCAGCCACAGCTTTCAGGGAGACAA
AGTATAGAGCATTACGGCTCGAGGCAGCTCTGGAAGCAGCATATAGCAAA
AAAAAGCTGCTTCAGGCGCGGATTGCAGAGTTGGAGAGCAAGCTTCAGCA
GGTTCAGCAACTGCTGCAGCGGGAGTTGGCGACGGTTTCAACGCAGGTTG
AGCTGGCTCCGGTGTGCTCAGCGTCCACGCAGGTCGAGCTTGCGCCGGTT
TGCTCGGTGTCGACGCAGGTACAGCTGCATGAGGCGCTCACCGCAGCACC
AGCGGCGGCGCCTTCATCTACGCGCGCTGGCAACAAGGGCGCGCGCGGCG
GCGGCGACATCCGTCCGTACGACTCCTGCACGTATGGCACAAAAGCCCAA
GATGACGTCAAGGTGCCGGTGTGGTGCTTGACCTTCGCGTACAACATTCG
CATCGGCTGA
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protein sequence of jgi.p|Trimin1|354707

>Trimin1|354707|estExt_Genemark1.C_Ctg_4290001 ID=Trimin1|354707|estExt_Genemark1.C_Ctg_4290001|Name=jgi.p|Trimin1|354707|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
MDATTLKLRSRMEAGGESLPYHCHLHGMFQHKRHEHVAKRALIESQLWAW
GEPMLDVLDLAGCSGVSVTEVLGMHDFELHSKLREAATAFRETKYRALRL
EAALEAAYSKKKLLQARIAELESKLQQVQQLLQRELATVSTQVELAPVCS
ASTQVELAPVCSVSTQVQLHEALTAAPAAAPSSTRAGNKGARGGGDIRPY
DSCTYGTKAQDDVKVPVWCLTFAYNIRIG*
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mRNA from alignment at Contig_429:2339..3732+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19023 ID=mRNA_19023|Name=jgi.p|Trimin1|354707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1394bp|location=Sequence derived from alignment at Contig_429:2339..3732+ (Tribonema minus UTEX_B_3156 )
CTGCTTTTCATTAGGAGTGGAGCCTTGCCGCTCATCTCTTGTTAGCAGCA
GCTCGTCCTGCTCTCTACGTTACCTACAGCAGCAGCACAACAGCAACAGC
ACTGCTAACTCAGTAACAGCATGGACGCCACCACCCTCAAGCTGCGCTCG
AGAATGGAGGCGGGGGGGGAGAGTCTACCCTACCACTGTCACCTCCACGG
CATGTTTCAACACAAGCGGCACGAGCATGTCGCTAAGCGTGCTCTGATCG
AGTCACAACTTTGGGCGTGGGGAGAGCCGATGCTCGACGTACTGGATCTG
GCCGGCTGCAGTGGCGTTTCTGTTACGGAGGTGCTGGGCATGCACGACTT
CGAGCTGCACAGCAAGTTGCGCGAGGCAGCCACAGCTTTCAGGGAGACAA
AGTATAGAGCATTACGGCTCGAGGCAGCTCTGGAAGCAGCATATAGCAAA
AAAAAGCTGCTTCAGGCGCGGATTGCAGAGTTGGAGAGCAAGCTTCAGCA
GGTTCAGCAACTGCTGCAGCGGGAGTTGGCGACGGTTTCAACGCAGGTTG
AGCTGGCTCCGGTGTGCTCAGCGTCCACGCAGGTCGAGCTTGCGCCGGTT
TGCTCGGTGTCGACGCAGGTACAGCTGCATGAGGCGCTCACCGCAGCACC
AGCGGCGGCGCCTTCATCTACGCGCGCTGGCAACAAGGGCGCGCGCGGCG
GCGGCGACATGTCAGCTGCACTTGTGCGCCCAGGTGTTGTCGATGCAACG
CATCTCGGTACCTAATGTCGTACAGGTACCGAGATGCGTTGCATCGACAA
CACCTGGGCGCACAGAAAGCATGCTGCAGTGTTTGCTCGCATGTTTCAAG
TGTCATGATCGAACACGCTTGAGCATGCATGCAGTGCATCCTTCAGGCGT
ATGTATGCCCATGCACAAGTCAGCACACCTTTAGATCTGTTTCATTGTCA
TTTGACGATTGCACTCATCCGTATGGACTTGTATTTATAAAGGCCCAAGG
GAGGCCGGATTGCCTATGCAATCGAAAAGCTTGCGTCAACGCAGCAGCCT
AGTCTGCGCTGTGCCCTAGGAGCTTGGACACCGGCGCTGCAACACAGCCC
AGCATTCGTGCTCCGCGTGTGTACGCCATGACGTGCTCCGCCAACTCCCG
CGCCAGCGATATGCTCAGCTCAATGAGGATCTGACGCTTAGCTAACCCGG
CCTTGCGTAACACATCTACCTCCCCCCCCCCCCCTGAGCACAGTGCTGAG
TGCATTGCCAACTCCTTGACAAAAAGTCTTGTCTGCTTGCCCAGCCGTCC
GTACGACTCCTGCACGTATGGCACAAAAGCCCAAGATGACGTCAAGGTGC
CGGTGTGGTGCTTGACCTTCGCGTACAACATTCGCATCGGCTGA
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Coding sequence (CDS) from alignment at Contig_429:2339..3732+

>mRNA_19023 ID=mRNA_19023|Name=jgi.p|Trimin1|354707|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=690bp|location=Sequence derived from alignment at Contig_429:2339..3732+ (Tribonema minus UTEX_B_3156 )
ATGGACGCCACCACCCTCAAGCTGCGCTCGAGAATGGAGGCGGGGGGGGA
GAGTCTACCCTACCACTGTCACCTCCACGGCATGTTTCAACACAAGCGGC
ACGAGCATGTCGCTAAGCGTGCTCTGATCGAGTCACAACTTTGGGCGTGG
GGAGAGCCGATGCTCGACGTACTGGATCTGGCCGGCTGCAGTGGCGTTTC
TGTTACGGAGGTGCTGGGCATGCACGACTTCGAGCTGCACAGCAAGTTGC
GCGAGGCAGCCACAGCTTTCAGGGAGACAAAGTATAGAGCATTACGGCTC
GAGGCAGCTCTGGAAGCAGCATATAGCAAAAAAAAGCTGCTTCAGGCGCG
GATTGCAGAGTTGGAGAGCAAGCTTCAGCAGGTTCAGCAACTGCTGCAGC
GGGAGTTGGCGACGGTTTCAACGCAGGTTGAGCTGGCTCCGGTGTGCTCA
GCGTCCACGCAGGTCGAGCTTGCGCCGGTTTGCTCGGTGTCGACGCAGGT
ACAGCTGCATGAGGCGCTCACCGCAGCACCAGCGGCGGCGCCTTCATCTA
CGCGCGCTGGCAACAAGGGCGCGCGCGGCGGCGGCGACATCCGTCCGTAC
GACTCCTGCACGTATGGCACAAAAGCCCAAGATGACGTCAAGGTGCCGGT
GTGGTGCTTGACCTTCGCGTACAACATTCGCATCGGCTGA
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