Trimin1|349421|estExt_Genemark1.C_Ctg_420110 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349421
Unique NameTrimin1|349421|estExt_Genemark1.C_Ctg_420110
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length141
Homology
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BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A835Z239_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z239_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.300e-27
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MEAAAGDGDLDAVQWLHQNHCPWSEGTSSKAAQXXXXXXXXXXXXXXXXXSFQTSAKXXXXXXXXXXXXXXXXXDETTCAAAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEWDSGGLHRAQ 140
            MEAAAGDGDLDAVQWLHQNHCPWSEGTSSKAAQXXXXXXXXXXXXXXXXXSFQTSAKXXXXXXXXXXXXXXXXXDETTCAAAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEWDSGGLHRAQ
Sbjct:    1 MEAAAGDGDLDAVQWLHQNHCPWSEGTSSKAAQXXXXXXXXXXXXXXXXXSFQTSAKXXXXXXXXXXXXXXXXXDETTCAAAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEWDSGGLHRAQ 140
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z239_9STRA1.300e-27100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 1..139
e-value: 1.5E-8
score: 35.6
NoneNo IPR availablePANTHERPTHR46586:SF3ANKYRIN REPEAT-CONTAINING PROTEINcoord: 1..127
NoneNo IPR availablePANTHERPTHR46586ANKYRIN REPEAT-CONTAINING PROTEINcoord: 1..127
NoneNo IPR availableSUPERFAMILY140860Pseudo ankyrin repeat-likecoord: 31..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:854388..856772 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349421mRNA_5715Tribonema minus UTEX_B_3156 mRNAContig_42 854388..857055 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349421|estExt_Genemark1.C_Ctg_420110 ID=Trimin1|349421|estExt_Genemark1.C_Ctg_420110|Name=jgi.p|Trimin1|349421|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
MEAAAGDGDLDAVQWLHQNHCPWSEGTSSKAAQNGHLEGLQWARKRGCPW
SFQTSAKNGYLEGVQWLHASGCPWDETTCAAAADGGYLEVLQWLRANGCP
WDKDTCVSAIYNECEEIVAWARANGCPCDEWDSGGLHRAQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf