mRNA_5644 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A836CCP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP9_9STRA) HSP 1 Score: 376 bits (965), Expect = 6.110e-131 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 3 Query: 69 MIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE 653 MIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE Sbjct: 1 MIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE 195
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A836CEA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA7_9STRA) HSP 1 Score: 269 bits (688), Expect = 1.160e-87 Identity = 136/216 (62.96%), Postives = 168/216 (77.78%), Query Frame = 3 Query: 6 LTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE 653 + YAF APGH P +AA QM A L++NPF P IN L++VIFNALG++PA++AQLLLP SK Q+ +PAAPFVL SFAGG FLL PYLALRQYRP VDE L GLA + ++GGVLTLV A GL+ +A+ + + E++ LF +QTLVHVS++DL LLS+V+WEPMLEDMRRRG YTDGS S ++LAAFCAIPVLGPA Y+A RPPLL ++ Sbjct: 57 VAYAFLYAPGHTPEGDAAVTQMTAALMTNPFSPDINQLYVVIFNALGVVPAIYAQLLLPGSKGQR-LPAAPFVLASFAGGYFLLAPYLALRQYRPCVDEAQLRGLATLSTLRLGGVLTLVFALGLLQFAITNHVWTSFEEYMLLFRSQTLVHVSSIDLLLLSVVVWEPMLEDMRRRGMYTDGSRSANIRLAAFCAIPVLGPAVYLAVRPPLLAAED 271
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A6U8J661_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8J661_9EUGL) HSP 1 Score: 172 bits (437), Expect = 1.860e-46 Identity = 101/212 (47.64%), Postives = 137/212 (64.62%), Query Frame = 3 Query: 3 FLTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPL 638 F+ YA +APG + A+A D ++ +++ + + +F IFN+LGIMPAV+A LLLP SKDQ+ +PA PF+ GSFA G F L PYLALR++RP S+GG K +KI VSA GLVAY +Q A P +L LF +Q LVHVS++DL++LS V ++EDM+RRG Y G K +AAF ++PV+GPAAY+ RP L Sbjct: 449 FMAYAGLVAPGGSEEAQAKDLDLVMAIVN--YTGEAGHIFFSIFNSLGIMPAVYAALLLPGSKDQR-LPAVPFIAGSFALGFFALAPYLALREWRPYAPA-SIGGFTKLMENKINATFLFVSALGLVAYGLQDFA-TQWPLYLDLFGSQKLVHVSSLDLTILSCVFPFTVIEDMQRRGWYQTGDAKDKAVVAAF-SVPVIGPAAYLLLRPKL 654
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S4BI97_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BI97_CHRCT) HSP 1 Score: 153 bits (387), Expect = 1.400e-41 Identity = 94/218 (43.12%), Postives = 135/218 (61.93%), Query Frame = 3 Query: 3 FLTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGL-AKATNSKIGGVLTLVSACGLVAYAVQSGA-LATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRG-AYTDG---SGSQKLKLAAFCAIPVLGPAAYVATRPPL 638 F++YAF AP ++P + A D+++I + INA F FN+LG++PAV+A LLLP +++Q+P+PA PFV S A G F + PYL RQ R V + S GGL A+ S++ + +A L A A+ S A L EF+ +F L H+ST+DL +LS ++WEPMLEDMRRR A++ G + +Q +L AF +PV+GP Y+ TRP L Sbjct: 114 FISYAFIFAP-NSPESAARDQEIILQFFDSARMFDINAYFFCTFNSLGVLPAVYAALLLPGAEEQRPLPALPFVGSSIALGYFGIAPYLVFRQPRTEVTQQSFGGLLARVLESRLYAAPLVAAAIALAARAIGSADDPAVLDEFVNIFQTSQLAHISTIDLVILSSIIWEPMLEDMRRRQWAWSAGETPTAAQLGRLLAFL-VPVVGPTLYLLTRPRL 329
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S4Q148_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q148_9DINO) HSP 1 Score: 144 bits (362), Expect = 3.770e-38 Identity = 93/226 (41.15%), Postives = 125/226 (55.31%), Query Frame = 3 Query: 3 FLTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNS----KIGGVLTLVSACGLVAYAVQSGALATLPE------FLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYT---DGSGSQKLKLAAFCA-IPVLGPAAYVATRPPL 638 FL YAF LAPG +P A+ DKQ++ LIS PFD ++ALF+ +FN+LGI P ++A LLP + +Q PVPA PFV SFA G F L PYLALR+YR + L T + +I VL L A L YA+ +G + + FL +F HVS VD +L + +LED RRRG + + + + L CA +PV G A++ RPPL Sbjct: 75 FLGYAFLLAPGKSPEAQEQDKQLLQTLISTPFDGSVSALFVGVFNSLGIWPVIYAATLLPGAANQSPVPAWPFVGSSFALGAFGLSPYLALREYRGGKGSVAQDDLDWVTRNWLEGRINAVLLLGGAVYLTLYALGNGTIGAVAPAEAWTAFLPVFMGSLTPHVSCVDFMVLWMFYAPVLLEDGRRRGIFAGPFESWDASEKSLFVLCAGLPVFGGCAWLLLRPPL 300
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S0J5P6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5P6_9EUKA) HSP 1 Score: 147 bits (371), Expect = 9.300e-38 Identity = 94/218 (43.12%), Postives = 131/218 (60.09%), Query Frame = 3 Query: 3 FLTYAFTLAPGHNPIA-EAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPR-VDETSLGGLAK-ATNSKI--GGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKL-KLAAFCAIPVLGPAAYVATRPPL 638 F Y +PG ++ ++ D ++I++ I++P +N +F +FNALG++PAV LLLP + QKP+P APFV SFA G LGPYLALR+ RP + + LG +A+ T SK+ G+L A G A A L EF LF LVHVST+D ++LS +EP+ EDM RRG + D + + +LAAFC +PV+GP AY+ RPPL Sbjct: 304 FSVYVAAFSPGEFSLSLDSMDNRLISNAIADP--QSLNPIFFAVFNALGVLPAVNLALLLPGANGQKPLPTAPFVGASFALGYGALGPYLALREPRPSAISRSELGFVARYVTESKLYAAGLLAASMALG-YGLATIVDVPAALSEFNQLFETSKLVHVSTIDFAILSTFAFEPIREDMSRRGWWDDDAADNNVGRLAAFC-VPVVGPCAYLLLRPPL 517
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A0M0JJ94_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJ94_9EUKA) HSP 1 Score: 139 bits (351), Expect = 2.180e-37 Identity = 97/231 (41.99%), Postives = 137/231 (59.31%), Query Frame = 3 Query: 3 FLTYAFTLAPGHNPIAEAADK-QMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPR-VDETSLGGLAKA-TNSKIGGVLTLVSACGLVAYAVQSGALATLPEF-------LTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYT----DGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE 653 +L+ F + G P + ++ + + +P I F VIFNALG++PA++A +LLP +KDQ+P P A + SF G LGPYL LRQ RP+ + LG +A+ T SK+ GV ++++ GL A LAT+P+F +LF+ +V+VS+ DL +LSL +EP+ EDM+RRG Y D S + +LAAFCA+PVLGPAAYV RP L PL E Sbjct: 5 YLSALFYVGSGSAPQGSPDETLAIVMNCLDTAAEPSI---FFVIFNALGVLPALYAAVLLPGAKDQRPAPPA-LIATSFFAGFGGLGPYLFLRQPRPQPISRAELGFIARTVTESKLFGVAMVLTSLGLGAK------LATIPDFDAALATYWSLFDQFGIVNVSSFDLLVLSLFFFEPLREDMQRRGWYAAPGEDPSTEEIARLAAFCAVPVLGPAAYVLARPAL-PLTE 224
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S4F170_CHRCT (Hypothetical protein n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F170_CHRCT) HSP 1 Score: 139 bits (349), Expect = 8.330e-36 Identity = 79/179 (44.13%), Postives = 112/179 (62.57%), Query Frame = 3 Query: 3 FLTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGL-AKATNSKIGGVLTLVSACGLVAYAVQSGA-LATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRR 533 F++YAF AP ++P + A D+++I + INA F FN+LG++PAV+A LLLP +++Q+P+PA PFV S A G F + PYL RQ R V + S GGL A+ S++ + +A L A A+ S A L EF+ +F L H+ST+DL +LS ++WEPMLEDMRRR Sbjct: 114 FISYAFIFAP-NSPESAARDQEIILQFFDSARMFDINAYFFCTFNSLGVLPAVYAALLLPGAEEQRPLPALPFVGSSIALGYFGIAPYLVFRQPRTEVTQQSFGGLLARVLESRLYAAPLVAAAIALAARAIGSADDPAVLDEFVNIFQTSQLAHISTIDLVILSSIIWEPMLEDMRRR 291
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S1MFT2_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MFT2_ALECA) HSP 1 Score: 137 bits (344), Expect = 1.020e-35 Identity = 89/223 (39.91%), Postives = 119/223 (53.36%), Query Frame = 3 Query: 12 YAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYR---PRVDETSLGGLAKA-TNSKIGGVLTLVSACGLVAYAVQSGALATLPE------FLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYT----DGSGSQKLKLAAFCAIPVLGPAAYVATRPPL 638 YAF LAPG++P A+ D +++ ++S PFD + ALF+ IFN+LGI P ++A LLP + Q PVPA PFV SFA G F L PYLALR+YR E L + + +I VL L A L YA+ +G + + FL +F HVS VD +L + +LED RRRG + GSQK +PV G A++ RPPL Sbjct: 55 YAFLLAPGNSPEAKELDLKVLGTMLSTPFDGTVAALFVCIFNSLGIWPVIYAATLLPGAASQSPVPAWPFVGSSFALGAFGLSPYLALREYRGSRSSAREEDLDWITRYWLEGRINAVLLLAGAVYLGLYALGNGTIGAVAPGEAWAAFLPVFMGSLTPHVSCVDFMVLWMFYGPVLLEDGRRRGLFAGPFESWEGSQKSLFVLCAGLPVFGGCAWLLLRPPL 277
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: C1EIA9_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EIA9_MICCC) HSP 1 Score: 135 bits (339), Expect = 2.740e-35 Identity = 82/196 (41.84%), Postives = 114/196 (58.16%), Query Frame = 3 Query: 60 DKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPR-VDETSLGGLAKAT-NSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQT-LVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPL 638 D ++ L+S PF +N +F +FN+LG++PAV+A LLLP +KDQ +P P + SFA G F LGPYL R+ R V +SLG + SK+ A L+AY + F+ ++ Q+ L VS+ DL++LS+ M+ + EDMRRRG Y DG+ K AAFCA+PVLGP Y+ TRP L Sbjct: 62 DAGLVTTLVSAPFSGAVNPIFEALFNSLGVVPAVYAALLLPGAKDQPRIPTVPPLAASFALGFFALGPYLIAREPRTEPVPRSSLGWATRTIFESKVFAAFNAAFAAFLIAYGAANFTSDAAEAFVAMWRDQSALACVSSCDLTVLSIAMYGALAEDMRRRGCY-DGA-----KAAAFCAVPVLGPCVYLLTRPSL 251 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5644 ID=mRNA_5644|Name=jgi.p|Trimin1|349377|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=710bp|location=Sequence derived from alignment at Contig_42:313059..314219- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGTTTCTGACATACGCTTTCACTCTTGCCCCAGGGCATAATCCGATAGCAback to top protein sequence of jgi.p|Trimin1|349377 >Trimin1|349377|estExt_Genemark1.C_Ctg_420045 ID=Trimin1|349377|estExt_Genemark1.C_Ctg_420045|Name=jgi.p|Trimin1|349377|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp MIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPback to top mRNA from alignment at Contig_42:313059..314219- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5644 ID=mRNA_5644|Name=jgi.p|Trimin1|349377|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1161bp|location=Sequence derived from alignment at Contig_42:313059..314219- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_42:313059..314219- >mRNA_5644 ID=mRNA_5644|Name=jgi.p|Trimin1|349377|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_42:313059..314219- (Tribonema minus UTEX_B_3156 )back to top |