Trimin1|166298|e_gw1.42.230.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|166298
Unique Name	Trimin1\|166298\|e_gw1.42.230.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	132

Homology

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 231 bits (588), Expect = 3.030e-76
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0

Query:    1 MSRPPRGRGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTGASD 131
            MSRPPRGRGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTGASD
Sbjct:    1 MSRPPRGRGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTGASD 131

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 169 bits (428), Expect = 4.390e-52
Identity = 88/122 (72.13%), Postives = 91/122 (74.59%), Query Frame = 0

Query:    7 GRGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128
            GRGG RGRG                 YDEGPP  VVELG F+H CEGEMVYKLTN MVPYFNAGAYLENKTKIGKVDEI GP+N   FTVKPD GV ATSFK GDKV+IG DKLLPMSRFTG
Sbjct:    1 GRGGGRGRGGRG--------------YDEGPPEYVVELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTG 108

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.270e-51
Identity = 77/96 (80.21%), Postives = 87/96 (90.62%), Query Frame = 0

Query:   33 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128
            YD+GPP E+VELG F+H CE EMVYKLTNSMVPYFNAGAYL+NKTK+GKVDEILGP+NG  FTVKPD GVNA+SFK+GDK+FIG  KLLP+SRFTG
Sbjct:   28 YDDGPPDEIVELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTG 123

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: T0QNK0_SAPDV (H/ACA ribonucleoprotein complex subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QNK0_SAPDV)

HSP 1 Score: 160 bits (406), Expect = 1.580e-47
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 0

Query:   33 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 127
            YDEGPP+ VVELGIF+HACE EMVYK TN  VPYFNAG YLENKTKIGKVDEILG IN   FTVKPD GV+A SFK GDKV+I PDKLLP+SRFT
Sbjct:   39 YDEGPPATVVELGIFIHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFT 133

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 155 bits (391), Expect = 7.870e-46
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 0

Query:   33 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128
            Y+EGPP EVVELG F+H CEGEMVYKL ++MVPYFNAGA+L++KTK+GKVDEI GPIN   FTVKPD GV+A SFK  DKVF+  +KLLPMSRFTG
Sbjct:   39 YEEGPPDEVVELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTG 134

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A024U6J9_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J9_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.100e-45
Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = 0

Query:   33 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 127
            ++EGPP+ VVELG+F+HACE EMVYK T+  VPYFNAGA+LENKTKIGKVDEILG IN   FTVKPD GV A SFK GDKV+I PDKLLP+SRFT
Sbjct:   38 FEEGPPATVVELGVFLHACEDEMVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFT 132

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A5D6Y826_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y826_9STRA)

HSP 1 Score: 154 bits (389), Expect = 9.210e-45
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 0

Query:   35 EGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 127
            EGPP+ VVELG F+HACE EMVYK TN  VPYFNAGA+LENKT+IGKVDEILG IN   FTVKPD GV+ATSFK GDKVFI PDKLLP+SRFT
Sbjct:   49 EGPPAHVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSATSFKAGDKVFISPDKLLPLSRFT 141

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A3M6VHN5_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHN5_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.200e-44
Identity = 74/97 (76.29%), Postives = 81/97 (83.51%), Query Frame = 0

Query:   35 EGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTGASD 131
            EGPP+ V+ELG FVHACE EMVYK TN  VPYFNAGA+LENKT+IGKVDEILG IN   FTVKPD GV+ATSF+ GDKVFI PDKLLP+SRFT   D
Sbjct:   42 EGPPAFVIELGSFVHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSATSFQAGDKVFISPDKLLPLSRFTEKPD 138

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.890e-44
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 0

Query:   33 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 127
            ++EGPP+ VVELG F+HACE EMVYK T+  VPYFNAG YLENKTKIGK+DEILG IN   FTVKPD GV A SFK GDKV+I PDKLLP+SRFT
Sbjct:   40 FEEGPPATVVELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFT 134

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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A1V9ZDJ8_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDJ8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.170e-44
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0

Query:   33 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 127
            ++EGPP+ VVELG+F+HACE EMVYK TN  VPYFNAG YLENKTKIGKVDEILG IN   FTVKPD GV+A SFK GDKV+I PDKLLP+SRFT
Sbjct:   35 FEEGPPATVVELGVFLHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFT 129

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|166298 vs. uniprot

BLAST of jgi.p|Trimin1|166298 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YSJ1_9STRA	3.030e-76	100.00	H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr...	[more]
A0A7S3USE8_HETAK	4.390e-52	72.13	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A6H5KV55_9PHAE	1.270e-51	80.21	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec...	[more]
T0QNK0_SAPDV	1.580e-47	80.00	H/ACA ribonucleoprotein complex subunit n=2 Tax=Sa...	[more]
A0A7S2UZ93_9STRA	7.870e-46	73.96	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A024U6J9_9STRA	3.100e-45	75.79	H/ACA ribonucleoprotein complex subunit n=2 Tax=Ap...	[more]
A0A5D6Y826_9STRA	9.210e-45	79.57	H/ACA ribonucleoprotein complex subunit n=1 Tax=Py...	[more]
A0A3M6VHN5_9STRA	1.200e-44	76.29	H/ACA ribonucleoprotein complex subunit n=1 Tax=Pe...	[more]
A0A6A4XZY0_9STRA	1.890e-44	74.74	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A1V9ZDJ8_9STRA	2.170e-44	76.84	H/ACA ribonucleoprotein complex subunit n=1 Tax=Th...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 41..126 e-value: 8.4E-23 score: 80.1
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 37..127 e-value: 1.6E-36 score: 126.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR23237:SF6	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1	coord: 8..127
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 8..127
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 42..115

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_42	contig	Contig_42:415264..416047 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|166298	mRNA_5664	Tribonema minus UTEX_B_3156	mRNA	Contig_42 415264..416047 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|166298|e_gw1.42.230.1 ID=Trimin1|166298|e_gw1.42.230.1|Name=jgi.p|Trimin1|166298|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
MSRPPRGRGGFRGRGPPGRGGSFGGRGRGRGGYDEGPPSEVVELGIFVHA
CEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDG
GVNATSFKDGDKVFIGPDKLLPMSRFTGASD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR009000	Transl_B-barrel_sf