mRNA_5664 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166298
Unique NamemRNA_5664
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 231 bits (588), Expect = 3.030e-76
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:    1 MSRPPRGRGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTGASD 393
            MSRPPRGRGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTGASD
Sbjct:    1 MSRPPRGRGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTGASD 131
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 169 bits (428), Expect = 4.390e-52
Identity = 88/122 (72.13%), Postives = 91/122 (74.59%), Query Frame = 1 
Query:   19 GRGGFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 384
            GRGG RGRG                 YDEGPP  VVELG F+H CEGEMVYKLTN MVPYFNAGAYLENKTKIGKVDEI GP+N   FTVKPD GV ATSFK GDKV+IG DKLLPMSRFTG
Sbjct:    1 GRGGGRGRGGRG--------------YDEGPPEYVVELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTG 108
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.270e-51
Identity = 77/96 (80.21%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:   97 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 384
            YD+GPP E+VELG F+H CE EMVYKLTNSMVPYFNAGAYL+NKTK+GKVDEILGP+NG  FTVKPD GVNA+SFK+GDK+FIG  KLLP+SRFTG
Sbjct:   28 YDDGPPDEIVELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTG 123
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: T0QNK0_SAPDV (H/ACA ribonucleoprotein complex subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QNK0_SAPDV)

HSP 1 Score: 160 bits (406), Expect = 1.580e-47
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:   97 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 381
            YDEGPP+ VVELGIF+HACE EMVYK TN  VPYFNAG YLENKTKIGKVDEILG IN   FTVKPD GV+A SFK GDKV+I PDKLLP+SRFT
Sbjct:   39 YDEGPPATVVELGIFIHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFT 133
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 155 bits (391), Expect = 7.870e-46
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:   97 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 384
            Y+EGPP EVVELG F+H CEGEMVYKL ++MVPYFNAGA+L++KTK+GKVDEI GPIN   FTVKPD GV+A SFK  DKVF+  +KLLPMSRFTG
Sbjct:   39 YEEGPPDEVVELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTG 134
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A024U6J9_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J9_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.100e-45
Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:   97 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 381
            ++EGPP+ VVELG+F+HACE EMVYK T+  VPYFNAGA+LENKTKIGKVDEILG IN   FTVKPD GV A SFK GDKV+I PDKLLP+SRFT
Sbjct:   38 FEEGPPATVVELGVFLHACEDEMVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFT 132
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A5D6Y826_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y826_9STRA)

HSP 1 Score: 154 bits (389), Expect = 9.210e-45
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:  103 EGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 381
            EGPP+ VVELG F+HACE EMVYK TN  VPYFNAGA+LENKT+IGKVDEILG IN   FTVKPD GV+ATSFK GDKVFI PDKLLP+SRFT
Sbjct:   49 EGPPAHVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSATSFKAGDKVFISPDKLLPLSRFT 141
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A3M6VHN5_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHN5_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.200e-44
Identity = 74/97 (76.29%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:  103 EGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTGASD 393
            EGPP+ V+ELG FVHACE EMVYK TN  VPYFNAGA+LENKT+IGKVDEILG IN   FTVKPD GV+ATSF+ GDKVFI PDKLLP+SRFT   D
Sbjct:   42 EGPPAFVIELGSFVHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSATSFQAGDKVFISPDKLLPLSRFTEKPD 138
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.890e-44
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:   97 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 381
            ++EGPP+ VVELG F+HACE EMVYK T+  VPYFNAG YLENKTKIGK+DEILG IN   FTVKPD GV A SFK GDKV+I PDKLLP+SRFT
Sbjct:   40 FEEGPPATVVELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFT 134
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BLAST of jgi.p|Trimin1|166298 vs. uniprot
Match: A0A1V9ZDJ8_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDJ8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.170e-44
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:   97 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFT 381
            ++EGPP+ VVELG+F+HACE EMVYK TN  VPYFNAG YLENKTKIGKVDEILG IN   FTVKPD GV+A SFK GDKV+I PDKLLP+SRFT
Sbjct:   35 FEEGPPATVVELGVFLHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFT 129
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166298 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSJ1_9STRA3.030e-76100.00H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr... [more]
A0A7S3USE8_HETAK4.390e-5272.13H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A6H5KV55_9PHAE1.270e-5180.21H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec... [more]
T0QNK0_SAPDV1.580e-4780.00H/ACA ribonucleoprotein complex subunit n=2 Tax=Sa... [more]
A0A7S2UZ93_9STRA7.870e-4673.96H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A024U6J9_9STRA3.100e-4575.79H/ACA ribonucleoprotein complex subunit n=2 Tax=Ap... [more]
A0A5D6Y826_9STRA9.210e-4579.57H/ACA ribonucleoprotein complex subunit n=1 Tax=Py... [more]
A0A3M6VHN5_9STRA1.200e-4476.29H/ACA ribonucleoprotein complex subunit n=1 Tax=Pe... [more]
A0A6A4XZY0_9STRA1.890e-4474.74H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A1V9ZDJ8_9STRA2.170e-4476.84H/ACA ribonucleoprotein complex subunit n=1 Tax=Th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:415264..416047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166298|e_gw1.42.230.1
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko03032
KEGG rclassRC00002,RC00017,RC02795
KEGG ReactionR01800
KEGG ModuleM00093,M00177,M00179,M00425
KEGG Pathwayko00260,ko00564,ko01100,ko01110,ko03008,ko03010,map00260,map00564,map01100,map01110,map03008,map03010
KEGG koko:K02866,ko:K11128,ko:K17103
EC2.7.8.8
GOsGO:0000154,GO:0000454,GO:0000723,GO:0001522,GO:0001650,GO:0001651,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010467,GO:0010833,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016074,GO:0016604,GO:0018130,GO:0019438,GO:0022613,GO:0030097,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031976,GO:0031981,GO:0031984,GO:0032200,GO:0032501,GO:0032502,GO:0032991,GO:0034357,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042592,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0051276,GO:0055035,GO:0060216,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990904
Preferred nameGAR1
Descriptionbox H/ACA snoRNA binding
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3277@1|root,KOG3262@2759|Eukaryota
Evalue2.6e-48
Seed ortholog112098.XP_008611150.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGar1 subunit of the H/ACA ribonucleoprotein complex
Ec32 orthologEc-01_001890.1
TranscriptId166620
TrackFilteredModels1
ProteinId166298
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166298gene_5664Tribonema minus UTEX_B_3156 geneContig_42 415264..416047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166298Trimin1|166298|e_gw1.42.230.1Tribonema minus UTEX_B_3156 polypeptideContig_42 415264..416047 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5664_2exon_5664_2Tribonema minus UTEX_B_3156 exonContig_42 415264..415532 -
exon_5664_1exon_5664_1Tribonema minus UTEX_B_3156 exonContig_42 415921..416047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5664CDS_5664Tribonema minus UTEX_B_3156 CDSContig_42 415921..416047 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5664 ID=mRNA_5664|Name=jgi.p|Trimin1|166298|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_42:415264..416047- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGACCGCCCAGAGGACGCGGTGGCTTCAGAGGACGTGGACCTCC
TGGCAGAGGTGGAAGCTTCGGTGGCCGCGGGCGAGGCAGGGGAGGCTACG
ATGAAGGACCGCCATCGGAAGTTGTAGAACTGGGAATATTTGTCCACGCT
TGCGAGGGAGAGATGGTCTACAAGCTCACCAACTCCATGGTGCCCTACTT
CAACGCGGGTGCCTACCTCGAGAACAAGACAAAAATAGGCAAGGTCGATG
AGATCCTGGGGCCCATCAATGGCTCCTATTTCACAGTAAAACCGGATGGC
GGCGTGAATGCAACATCCTTCAAGGACGGAGACAAAGTTTTCATCGGCCC
CGACAAGCTGCTGCCAATGAGCAGATTCACAGGTGCGTCAGATTGA
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protein sequence of jgi.p|Trimin1|166298

>Trimin1|166298|e_gw1.42.230.1 ID=Trimin1|166298|e_gw1.42.230.1|Name=jgi.p|Trimin1|166298|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
MSRPPRGRGGFRGRGPPGRGGSFGGRGRGRGGYDEGPPSEVVELGIFVHA
CEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDG
GVNATSFKDGDKVFIGPDKLLPMSRFTGASD*
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mRNA from alignment at Contig_42:415264..416047-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5664 ID=mRNA_5664|Name=jgi.p|Trimin1|166298|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=784bp|location=Sequence derived from alignment at Contig_42:415264..416047- (Tribonema minus UTEX_B_3156 )
ATGTCTCGACCGCCCAGAGGACGCGGTGGCTTCAGAGGACGTGGACCTCC
TGGCAGAGGTGGAAGCTTCGGTGGCCGCGGGCGAGGCAGGGGAGGCTACG
ATGAAGGACCGCCATCGGAAGTTGTAGGTGGGTGGGCCAGAGACATTAAC
CTGTCAAGGTCACGCTTGGCAATGCTGGCTGGTGAAACTGTGGTGCAGCA
TCATGGAAGCGCGCTTTGTTGCTGCCACAGGTCCCCTATGTCGATGACAG
ACTACTAGCCCTCCAGCGCTGCTCACACGGTCGCTGCGGCGCCACCCTTC
TAGCGCCAGGGTCATGCGCTGTGTTCGGCCAACTTCCTCCAACGTATACG
TCAGCAGCAATTTGCTCTGTTGTCTCTTCTTATCACTCAGAGTTGACTCC
ACGCGGTTGACACACCACAGCTCCGCCATGCATGTCGACAGCTGGCCTGT
GAAGCGAGCCACCAAGCTAGCGCCATGATCTGACCTACGTGATGCGTTTC
TGTTTTCAAATACAGAACTGGGAATATTTGTCCACGCTTGCGAGGGAGAG
ATGGTCTACAAGCTCACCAACTCCATGGTGCCCTACTTCAACGCGGGTGC
CTACCTCGAGAACAAGACAAAAATAGGCAAGGTCGATGAGATCCTGGGGC
CCATCAATGGCTCCTATTTCACAGTAAAACCGGATGGCGGCGTGAATGCA
ACATCCTTCAAGGACGGAGACAAAGTTTTCATCGGCCCCGACAAGCTGCT
GCCAATGAGCAGATTCACAGGTGCGTCAGATTGA
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Coding sequence (CDS) from alignment at Contig_42:415264..416047-

>mRNA_5664 ID=mRNA_5664|Name=jgi.p|Trimin1|166298|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_42:415264..416047- (Tribonema minus UTEX_B_3156 )
ATGTCTCGACCGCCCAGAGGACGCGGTGGCTTCAGAGGACGTGGACCTCC
TGGCAGAGGTGGAAGCTTCGGTGGCCGCGGGCGAGGCAGGGGAGGCTACG
ATGAAGGACCGCCATCGGAAGTTGTAGAACTGGGAATATTTGTCCACGCT
TGCGAGGGAGAGATGGTCTACAAGCTCACCAACTCCATGGTGCCCTACTT
CAACGCGGGTGCCTACCTCGAGAACAAGACAAAAATAGGCAAGGTCGATG
AGATCCTGGGGCCCATCAATGGCTCCTATTTCACAGTAAAACCGGATGGC
GGCGTGAATGCAACATCCTTCAAGGACGGAGACAAAGTTTTCATCGGCCC
CGACAAGCTGCTGCCAATGAGCAGATTCACAGGTGCGTCAGATTGA
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