Trimin1|166257|e_gw1.42.11.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|166257
Unique NameTrimin1|166257|e_gw1.42.11.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length273
Homology
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A836CCP1_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP1_9STRA)

HSP 1 Score: 533 bits (1372), Expect = 4.050e-191
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG 272
            RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG
Sbjct:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG 272          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S0TS87_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TS87_HEMAN)

HSP 1 Score: 224 bits (571), Expect = 6.480e-69
Identity = 126/262 (48.09%), Postives = 163/262 (62.21%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDA 242
            R+NKCFK  ASRRE+D+F+ +GRV +N RTA  GARV  GDRVTLDGKL                  F Y+KY+KP GV  TTD     N++     +R     R+F VGRLDKDS+G +LLTSDGRLP A L +    +K YTV V+R I    +  + +GVTIT   Q  G  K +TA T+PC+      Y ++ITL+EGRNRQIRRM + +G+ V  LHR   MGITL+G+REG+ + L   E+ L+N+AL  AA  +A
Sbjct:   37 RVNKCFKEFASRRESDEFVRQGRVNINGRTAELGARVRFGDRVTLDGKLVRWEVMALTDSDFEAGEQFTYVKYYKPEGVVCTTDTRIRNNII-----DRIGHPDRIFPVGRLDKDSTGLILLTSDGRLPNAVLRSGRKHDKKYTVIVDRPIQPEDVTSLAAGVTITTTAQRDGRSKTITAPTMPCRVRQLSKYELEITLQEGRNRQIRRMLDALGYSVLELHRLEVMGITLSGLREGQCRDLTRHEMTLVNQALAAAASSEA 293          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A5J4YRA3_PORPP (23S rRNA pseudouridine n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRA3_PORPP)

HSP 1 Score: 211 bits (538), Expect = 9.360e-64
Identity = 121/267 (45.32%), Postives = 157/267 (58.80%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL-------------------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRAL 234
            RINKCF + ASRRE+D+ +  GR R+N + A  GARV  GD VTLDGK                                FVY+KYWKP G+T TTDR    N+++A G       +R+F VGRLDKDSSG +LLTSDGRLP + L A+   EK Y VTV+R  S   ++ +R GV IT   Q     K +TAKTLP Q        + IT+ EGRNRQIR+M + +G+ V+ LHR   MGI LNG+R G+W+ LN +E++++N  L
Sbjct:   56 RINKCFASFASRRESDRIVSAGRARINGKVAVNGARVRSGDVVTLDGKKIDWERLVPASDWKGAARRDEQEVDQVGVSDQFVYLKYWKPRGITCTTDRRIQGNIIDAIGHR-----ERIFPVGRLDKDSSGLILLTSDGRLPNSMLRAKHKNEKTYRVTVDRPCSVNHVQHLRDGVVITTIAQRDRTVKPLTAKTLPAQVVQMAPDVLLITIVEGRNRQIRKMLDALGYTVRALHRVEIMGIGLNGLRHGQWRELNAQELEIVNNCL 317          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S0ZIH2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZIH2_9RHOD)

HSP 1 Score: 201 bits (510), Expect = 1.540e-59
Identity = 116/253 (45.85%), Postives = 149/253 (58.89%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL----------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMR-EGEWKPLNVKEVKLINRAL 234
            RINKCFK+ ASRR AD+ +EEGRV +N   AT G RV  GD+V LDGK                 F Y+K WKPVGV  TTD  D  ++++   +     G RLF VGRLD  SSG +LLTSDGRLP AAL + +   K Y VTV+  + +  L ++R GV IT   Q     + +TA T PC+        +K  LKEGRNRQIR+M   + +    LHR SFMGITL+ ++ EGEWK LN +E+ ++   L
Sbjct:   59 RINKCFKSFASRRAADRMVEEGRVHINGILATAGTRVFSGDQVQLDGKHIEWERLTVTAPAETKPFTYLKLWKPVGVVCTTDLKDKNSIMHHMRSAEIASGDRLFPVGRLDSASSGLILLTSDGRLPSAALGSRSGCTKEYLVTVDVPVCEKDLLKLRQGVVITTVAQRDRVRRPLTAMTSPCEVERIGRRQLKFVLKEGRNRQIRKMLGALNYTTLALHRNSFMGITLDPLKYEGEWKDLNKREMDIVRDCL 311          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: C1N350_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N350_MICPC)

HSP 1 Score: 194 bits (494), Expect = 2.650e-58
Identity = 109/234 (46.58%), Postives = 142/234 (60.68%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGK-----LFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHS--GKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEV 227
            R+NKCFK+  SRR AD+ +  G V VN         V PGD V L G+        Y+KYWKP GVT TTD  D TN+++A      Y   RLF VGRLDKDS+G +LLTSDGRLP AAL +   ++K Y V V+  +    +  +R GV I+ PVQ     + +TA+TLPC+       +++ITL+EGRNRQIRRM + VG++V  LHR   MGI L G REG W   + +E+
Sbjct:    1 RVNKCFKDFTSRRNADRLVASGAVTVNGAVXXXXXMVFPGDVVELRGERVRWETLNYVKYWKPRGVTCTTDARDRTNIVDAVN----YPDARLFPVGRLDKDSTGLILLTSDGRLPNAALRSGRKRDKKYLVVVDAVVRPEDVRMLRDGVVISTPVQRDRVDRVLTARTLPCEIDVVGARTLEITLREGRNRQIRRMLDAVGYRVINLHRTEIMGIGLRGTREGRWVECDEEEL 230          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7R9XWT9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XWT9_MICPS)

HSP 1 Score: 195 bits (495), Expect = 1.900e-57
Identity = 114/267 (42.70%), Postives = 149/267 (55.81%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL----------------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHS--GKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREA 237
            R+NKCFK+  SRR AD+ +  G V VN         V PGD V L G+                             F Y+KYWKP GVT TTD  D TN+++A      Y   RLF VGRLDKDS+G +LLTSDGRLP AAL +   ++K Y V V+  +    +  +R GV I+ PVQ     + +TA+TLPC+       +++ITL+EGRNRQIRRM + VG++V  LHR   MGI L G REG W   + +E+ +I R + EA
Sbjct:   36 RVNKCFKDFTSRRNADRLVASGAVTVNGAVXXXXXMVFPGDVVELRGERVRWETLNVIDESRESATSSSPAASRGSRFKYVKYWKPRGVTCTTDARDRTNIVDAVN----YPDARLFPVGRLDKDSTGLILLTSDGRLPNAALRSGRKRDKKYLVVVDAVVRPEDVRMLRDGVVISTPVQRDRVDRVLTARTLPCEIDVVGARTLEITLREGRNRQIRRMLDAVGYRVINLHRTEIMGIGLRGTREGRWVECDEEELGIIRRCIAEA 298          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S1I747_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I747_9EUGL)

HSP 1 Score: 196 bits (499), Expect = 1.150e-56
Identity = 117/267 (43.82%), Postives = 156/267 (58.43%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDG-------------------KLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAG--PCD-WYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAP 243
            RIN C  ++ SRR+AD ++++GRV +N   A  G RV  GD V +DG                     FVYIKYWKPVGVT TTD  D TN++   G   A    RLF VGRLDKDS+G +LLT+DGR+ G+ L  +  + KVY VT++   S   +  + SGV IT  +Q  G  + +TA TLPC+    P D    ++ TL EGRNRQIRRMCE +G++V  LHR  F  ITL G+R G+W  L+  ++K++  A+ E A    P
Sbjct:  152 RINSCISSL-SRRQADAYIQQGRVTINGAVAKLGDRVYAGDEVRVDGFVQRWQTLAEAKNTAPGKSNTFVYIKYWKPVGVTCTTDPKDPTNIIRMGGF--ANLPHRLFTVGRLDKDSTGLILLTNDGRVTGSMLRPKLKKPKVYEVTLDAPPSQRDVATLASGVVITTQIQRDGWVRDITAPTLPCKVRKIPGDNGRRLEFTLTEGRNRQIRRMCEALGYQVVGLHRTMFSDITLQGLRPGKWAELSADDMKVVRTAIAEDADAVGP 415          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: L1IIQ2_GUITC (S4 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IIQ2_GUITC)

HSP 1 Score: 191 bits (485), Expect = 2.070e-56
Identity = 109/250 (43.60%), Postives = 146/250 (58.40%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKA--VTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLI 230
            RINKCFK  ASRRE+D+F+++GRV V              + V LDGKL                  FVYIKYWKP GV  TTD     N+++A G       +R+F VGRLDKDS+G +LLTSDGR+P   L ++   +K Y V  +R I +  + ++  GV IT   Q   K+  +TA+TLPC+        + ITL EGRNRQIR+M E +G++V  LHR   MGITL+G++ GEW+PL+  E+  I
Sbjct:   23 RINKCFKEFASRRESDRFVQDGRVTVXXXXXXXXXXXXXXNVVRLDGKLVQWEGLSIIDETVAPQDQFVYIKYWKPRGVVCTTDTRVRGNIVDAVGHP-----ERIFMVGRLDKDSTGLILLTSDGRVPNLVLRSDHKHDKKYMVRADRAIREEDIHKLAEGVVITTTAQRDRKSKIITARTLPCEITRVSDDEICITLHEGRNRQIRKMLEVLGYEVLELHRVEVMGITLSGLKIGEWRPLSESEMSFI 267          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S2S9C0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9C0_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.330e-54
Identity = 116/283 (40.99%), Postives = 153/283 (54.06%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPG-DRVTLDGKL----------------------------FVYIKYWKPVGVTSTTDRGDATNVLN----------ASGAERAYRGQ--------RLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRAL 234
            R+NKCF++  SRR+AD  +E GRV VN +  T G RV PG D VTLDGK                             F YIKYWKP GVT TTD    +N+++           +G+   Y+ +        R+F VGRLDKDSSG + LTSDGRLP A   +   + K+Y V V+ R+ ++ L++ R GV IT   Q  G  K +TAKT PC+         +ITL EGRNRQIRRMC+ +G++V+ LHR     ITL  +  G W  L+  E+ +IN  L
Sbjct:   85 RLNKCFRSSHSRRQADALIEAGRVNVNGKVGTPGQRVFPGKDIVTLDGKSVNWEELNVLLPTTPVTTNSSNNSKPKSQFSYIKYWKPSGVTCTTDLSIPSNIIDELQHSPQAGTGTGSYDKYQKRSNGFNPRNRVFTVGRLDKDSSGLIFLTSDGRLPNAISRSVFKRPKIYQVKVDYRLKESDLQQWRDGVVITTVSQRDGQSKPLTAKTQPCEVQQTSHTEFEITLMEGRNRQIRRMCDVLGYRVRDLHRIEVTDITLERLTPGSWDYLSPNEMTIINNIL 367          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A061RIT5_9CHLO (23S rRNA pseudouridine2605 synthase n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RIT5_9CHLO)

HSP 1 Score: 187 bits (476), Expect = 7.690e-54
Identity = 114/269 (42.38%), Postives = 149/269 (55.39%), Query Frame = 0
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDR-----------------VTLDGKL-----------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAV--TAKTLPCQAGPCDWY--SVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREA 237
            RINKCFK++ SRREAD+ +E+GRVRVN   A TG+                         +  G              VYIKYWKPVGV  T+D     NV++     R    +R+F VGRLDKD+SG LLLT+DGRL  A   A +  EK Y V     ++D  L R+R GV IT   +  G+A   TAKTLPC+A        +V++T++EGRNRQIRRM   VGH+V  LHR S M I+L+G+  G WK L+ +E+  +  A+  A
Sbjct:   59 RINKCFKHLVSRREADRLIEQGRVRVNGDIAVTGSXXXXXXXXXXXXXXINWCQNSEIVASASGDFKEAWRNKKSCGLVYIKYWKPVGVVCTSDERVPNNVIS-----RIKHKERVFMVGRLDKDTSGLLLLTTDGRLVNAVCRASSGCEKTYLVRTRDPVADGELRRLREGVVITTEAKRDGRAKLRTAKTLPCEANRARGTPNAVELTIREGRNRQIRRMFAAVGHEVTGLHRTSVMSISLSGLSPGSWKELSEREIAALRSAMESA 322          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCP1_9STRA4.050e-191100.00Pseudouridine synthase (Fragment) n=1 Tax=Tribonem... [more]
A0A7S0TS87_HEMAN6.480e-6948.09Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5J4YRA3_PORPP9.360e-6445.3223S rRNA pseudouridine n=1 Tax=Porphyridium purpur... [more]
A0A7S0ZIH2_9RHOD1.540e-5945.85Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
C1N350_MICPC2.650e-5846.58Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A7R9XWT9_MICPS1.900e-5742.70Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S1I747_9EUGL1.150e-5643.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
L1IIQ2_GUITC2.070e-5643.60S4 domain-containing protein n=1 Tax=Guillardia th... [more]
A0A7S2S9C0_9STRA2.330e-5440.99Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A061RIT5_9CHLO7.690e-5442.3823S rRNA pseudouridine2605 synthase n=3 Tax=Tetras... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 1..57
e-value: 0.001
score: 28.3
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 10..43
e-value: 1.6E-7
score: 30.9
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 9..57
e-value: 5.8618E-7
score: 44.1626
IPR020094Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalGENE3D3.30.70.580coord: 52..227
e-value: 3.3E-42
score: 145.8
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 55..192
e-value: 3.9E-13
score: 49.8
IPR042092Pseudouridine synthase, RsuA/RluB/E/F, catalytic domainGENE3D3.30.70.1560coord: 121..210
e-value: 3.3E-42
score: 145.8
IPR000748Pseudouridine synthase, RsuA/RluB/E/FTIGRFAMTIGR00093TIGR00093coord: 57..223
e-value: 7.0E-42
score: 140.9
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 1..50
e-value: 1.9E-12
score: 48.3
NoneNo IPR availablePIRSRPIRSR606225-1PIRSR606225-1coord: 57..105
e-value: 0.0087
score: 13.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..272
NoneNo IPR availablePANTHERPTHR21600:SF2423S RRNA PSEUDOURIDINE(2604) SYNTHASEcoord: 9..243
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 9..243
NoneNo IPR availablePROSITEPS50889S4coord: 9..56
score: 11.58845
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 8..53
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved sitePROSITEPS01149PSI_RSUcoord: 92..106
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 52..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:883437..886431 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166257mRNA_5721Tribonema minus UTEX_B_3156 mRNAContig_42 883437..886431 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|166257|e_gw1.42.11.1 ID=Trimin1|166257|e_gw1.42.11.1|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLF
VYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSG
ALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAP
VQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKF
LHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAG
APALLPEQNVDVTAAPSVEQRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR020094TruA/RsuA/RluB/E/F_N
IPR006145PsdUridine_synth_RsuA/RluA
IPR042092PsdUridine_s_RsuA/RluB/E/F_cat
IPR000748PsdUridine_synth_RsuA/RluB/E/F
IPR036986S4_RNA-bd_sf
IPR018496PsdUridine_synth_RsuA/RluB_CS
IPR020103PsdUridine_synth_cat_dom_sf