mRNA_4533 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349348
Unique NamemRNA_4533
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349348 vs. uniprot
Match: A0A835YSZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ7_9STRA)

HSP 1 Score: 343 bits (880), Expect = 6.750e-118
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 
Query:    1 MGDAPGGDRDRNSAAAATGAEALHGARSPFTAGGAGGGLXXXXXXXXXXXXXXXXXQRAPEFEAVDRAREQVRTARRAFISARAEIDGLRALLLAAEERFVAAWSATLRAEHALGSRRNEALAFELLFRRAFIAEALREEARADTPEADQLATTPLTPRKLRIPPIRAAGDPTVPAPGAASXXXXXXXXXXXRHSMPVVGGRWSPRAGGDGAQALCPLA 657
            MGDAPGGDRDRNSAAAATGAEALHGARSPFTAGGAGGGLXXXXXXXXXXXXXXXXXQRAPEFEAVDRAREQVRTARRAFISARAEIDGLRALLLAAEERFVAAWSATLRAEHALGSRRNEALAFELLFRRAFIAEALREEARADTPEADQLATTPLTPRKLRIPPIRAAGDPTVPAPGAASXXXXXXXXXXXRHSMPVVGGRWSPRAGGDGAQALCPLA
Sbjct:    1 MGDAPGGDRDRNSAAAATGAEALHGARSPFTAGGAGGGLXXXXXXXXXXXXXXXXXQRAPEFEAVDRAREQVRTARRAFISARAEIDGLRALLLAAEERFVAAWSATLRAEHALGSRRNEALAFELLFRRAFIAEALREEARADTPEADQLATTPLTPRKLRIPPIRAAGDPTVPAPGAASXXXXXXXXXXXRHSMPVVGGRWSPRAGGDGAQALCPLA 219
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349348 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YSZ7_9STRA6.750e-118100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:982003..983019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349348|estExt_Genemark1.C_Ctg_410159
Hectar predicted targeting categoryother localisation
TranscriptId349670
TrackFilteredModels1
ProteinId349348
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349348gene_4533Tribonema minus UTEX_B_3156 geneContig_41 982003..983019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349348Trimin1|349348|estExt_Genemark1.C_Ctg_410159Tribonema minus UTEX_B_3156 polypeptideContig_41 982003..983019 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4533_2exon_4533_2Tribonema minus UTEX_B_3156 exonContig_41 982003..982085 -
exon_4533_1exon_4533_1Tribonema minus UTEX_B_3156 exonContig_41 982443..983019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4533CDS_4533Tribonema minus UTEX_B_3156 CDSContig_41 982443..983019 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4533 ID=mRNA_4533|Name=jgi.p|Trimin1|349348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=660bp|location=Sequence derived from alignment at Contig_41:982003..983019- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGACGCTCCAGGAGGTGATCGAGATCGAAATTCCGCAGCGGCTGC
CACGGGTGCGGAGGCACTGCACGGGGCCCGATCGCCGTTCACTGCGGGAG
GCGCTGGTGGAGGTCTTCGGAATTCCGGAGCGGCTGCGGCGGGCGCGGAG
GCGATGCCCGGGGCACGACAGCGCGCGCCGGAGTTCGAGGCCGTGGACAG
AGCCCGAGAGCAGGTACGGACCGCGCGCAGAGCCTTCATCTCCGCGCGGG
CGGAGATAGACGGGCTGAGGGCGCTGCTGCTGGCGGCGGAGGAACGCTTC
GTAGCGGCGTGGTCCGCCACCCTGCGTGCGGAACACGCGCTGGGGTCGCG
AAGGAACGAGGCGTTGGCGTTCGAACTGCTGTTCAGGAGAGCGTTCATCG
CGGAAGCGCTCAGGGAGGAGGCGCGCGCGGATACCCCGGAGGCGGACCAG
CTCGCGACGACGCCCCTGACTCCCCGTAAGCTCCGGATCCCTCCGATCCG
CGCCGCCGGCGACCCGACGGTCCCGGCCCCTGGCGCGGCCTCCGACGACG
ACGAAGGCGGCCCGCCGCCGAAGAAGAGGCACTCGATGCCTGTCGTCGGG
GGACGCTGGTCGCCGAGGGCGGGCGGGGACGGCGCGCAGGCTCTCTGCCC
GCTCGCCTAG
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protein sequence of jgi.p|Trimin1|349348

>Trimin1|349348|estExt_Genemark1.C_Ctg_410159 ID=Trimin1|349348|estExt_Genemark1.C_Ctg_410159|Name=jgi.p|Trimin1|349348|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=220bp
MGDAPGGDRDRNSAAAATGAEALHGARSPFTAGGAGGGLRNSGAAAAGAE
AMPGARQRAPEFEAVDRAREQVRTARRAFISARAEIDGLRALLLAAEERF
VAAWSATLRAEHALGSRRNEALAFELLFRRAFIAEALREEARADTPEADQ
LATTPLTPRKLRIPPIRAAGDPTVPAPGAASDDDEGGPPPKKRHSMPVVG
GRWSPRAGGDGAQALCPLA*
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mRNA from alignment at Contig_41:982003..983019-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4533 ID=mRNA_4533|Name=jgi.p|Trimin1|349348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1017bp|location=Sequence derived from alignment at Contig_41:982003..983019- (Tribonema minus UTEX_B_3156 )
ATGGGAGACGCTCCAGGAGGTGATCGAGATCGAAATTCCGCAGCGGCTGC
CACGGGTGCGGAGGCACTGCACGGGGCCCGATCGCCGTTCACTGCGGGAG
GCGCTGGTGGAGGTCTTCGGAATTCCGGAGCGGCTGCGGCGGGCGCGGAG
GCGATGCCCGGGGCACGACAGCGCGCGCCGGAGTTCGAGGCCGTGGACAG
AGCCCGAGAGCAGGTACGGACCGCGCGCAGAGCCTTCATCTCCGCGCGGG
CGGAGATAGACGGGCTGAGGGCGCTGCTGCTGGCGGCGGAGGAACGCTTC
GTAGCGGCGTGGTCCGCCACCCTGCGTGCGGAACACGCGCTGGGGTCGCG
AAGGAACGAGGCGTTGGCGTTCGAACTGCTGTTCAGGAGAGCGTTCATCG
CGGAAGCGCTCAGGGAGGAGGCGCGCGCGGATACCCCGGAGGCGGACCAG
CTCGCGACGACGCCCCTGACTCCCCGTAAGCTCCGGATCCCTCCGATCCG
CGCCGCCGGCGACCCGACGGTCCCGGCCCCTGGCGCGGCCTCCGACGACG
ACGAAGGCGGCCCGCCGCCGAAGAAGAGTCGCGCGTAGCGCGCCCGTCGT
GCTGCCGGCGCCGACGGGGCTCTTCCCCGCCGGTCGAGGTGGGGAACGCG
GGCGGGGGGCGGCGCGGAGGCGCTCTGTGTCATCGCCGCCGCCGAGGGAG
GCCACCTCCCCCCCTCCCCCCCGTCACCCTGTACATGCCTCCCTACGACG
ACCGCAGCGACGTCGTCTGAATCCCGGCCCTCCCGCCCCGACCCTCCGCC
CCGCGTCCGCGTCCGATGGCGACTCGCCGGCCGTGCGCGCACGATGAATA
TACTGAGCAGAGAGCGTCGTCCCTCATTCGCGTCTCGTCGCCGTTCTGTC
TGTGAGTCTGCGGCTCGCTCTCTCGGTGCCGCAGGGCACTCGATGCCTGT
CGTCGGGGGACGCTGGTCGCCGAGGGCGGGCGGGGACGGCGCGCAGGCTC
TCTGCCCGCTCGCCTAG
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Coding sequence (CDS) from alignment at Contig_41:982003..983019-

>mRNA_4533 ID=mRNA_4533|Name=jgi.p|Trimin1|349348|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=660bp|location=Sequence derived from alignment at Contig_41:982003..983019- (Tribonema minus UTEX_B_3156 )
ATGGGAGACGCTCCAGGAGGTGATCGAGATCGAAATTCCGCAGCGGCTGC
CACGGGTGCGGAGGCACTGCACGGGGCCCGATCGCCGTTCACTGCGGGAG
GCGCTGGTGGAGGTCTTCGGAATTCCGGAGCGGCTGCGGCGGGCGCGGAG
GCGATGCCCGGGGCACGACAGCGCGCGCCGGAGTTCGAGGCCGTGGACAG
AGCCCGAGAGCAGGTACGGACCGCGCGCAGAGCCTTCATCTCCGCGCGGG
CGGAGATAGACGGGCTGAGGGCGCTGCTGCTGGCGGCGGAGGAACGCTTC
GTAGCGGCGTGGTCCGCCACCCTGCGTGCGGAACACGCGCTGGGGTCGCG
AAGGAACGAGGCGTTGGCGTTCGAACTGCTGTTCAGGAGAGCGTTCATCG
CGGAAGCGCTCAGGGAGGAGGCGCGCGCGGATACCCCGGAGGCGGACCAG
CTCGCGACGACGCCCCTGACTCCCCGTAAGCTCCGGATCCCTCCGATCCG
CGCCGCCGGCGACCCGACGGTCCCGGCCCCTGGCGCGGCCTCCGACGACG
ACGAAGGCGGCCCGCCGCCGAAGAAGAGGCACTCGATGCCTGTCGTCGGG
GGACGCTGGTCGCCGAGGGCGGGCGGGGACGGCGCGCAGGCTCTCTGCCC
GCTCGCCTAG
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