mRNA_4518 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|349345 vs. uniprot
Match: A0A835YSZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ0_9STRA) HSP 1 Score: 687 bits (1774), Expect = 6.840e-244 Identity = 521/521 (100.00%), Postives = 521/521 (100.00%), Query Frame = 1
Query: 1 MRTRRSAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRRRCRDRKGTATAKAAEGEAASRGGAEEAXXXXXXXXXXXXXXXADGAAEGPPLRSPSRTGRDRRRRSRAAPXXXXAPERAEADGEDDVXXXXXXXXXXXXAGDRETAAAPRPRAPRCAHPDGCGRVAKSGGLCRYHGGGPRCVVPGCPSSAEQAADGRPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTGGPPRXXXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCAFAARYLVQCAPSDEERAALMRRFRFKKLLVMGGEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGDERPDAFHYIADGESEWAIHLEYDEGVKHEKGEGRLAAVADAAGVDPSRVFVVRVQAHHEEPAKAVCARRTKGSHSYFELTRRGEEVVRETAEAVREILGWIRDGTADSRPDASRRWVINF 1563
MRTRRSAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRRRCRDRKGTATAKAAEGEAASRGGAEEAXXXXXXXXXXXXXXXADGAAEGPPLRSPSRTGRDRRRRSRAAPXXXXAPERAEADGEDDVXXXXXXXXXXXXAGDRETAAAPRPRAPRCAHPDGCGRVAKSGGLCRYHGGGPRCVVPGCPSSAEQAADGRPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTGGPPRXXXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCAFAARYLVQCAPSDEERAALMRRFRFKKLLVMGGEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGDERPDAFHYIADGESEWAIHLEYDEGVKHEKGEGRLAAVADAAGVDPSRVFVVRVQAHHEEPAKAVCARRTKGSHSYFELTRRGEEVVRETAEAVREILGWIRDGTADSRPDASRRWVINF
Sbjct: 1 MRTRRSAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRRRCRDRKGTATAKAAEGEAASRGGAEEAXXXXXXXXXXXXXXXADGAAEGPPLRSPSRTGRDRRRRSRAAPXXXXAPERAEADGEDDVXXXXXXXXXXXXAGDRETAAAPRPRAPRCAHPDGCGRVAKSGGLCRYHGGGPRCVVPGCPSSAEQAADGRPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTGGPPRXXXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCAFAARYLVQCAPSDEERAALMRRFRFKKLLVMGGEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGDERPDAFHYIADGESEWAIHLEYDEGVKHEKGEGRLAAVADAAGVDPSRVFVVRVQAHHEEPAKAVCARRTKGSHSYFELTRRGEEVVRETAEAVREILGWIRDGTADSRPDASRRWVINF 521
BLAST of jgi.p|Trimin1|349345 vs. uniprot
Match: A0A835YSZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ3_9STRA) HSP 1 Score: 582 bits (1499), Expect = 8.960e-193 Identity = 407/461 (88.29%), Postives = 408/461 (88.50%), Query Frame = 1
Query: 169 GEAASRGGAEEAXXXXXXXXXXXXXXXADGAAEGPPLRSPSRTGRDRRRRSRAAPXXXXAPERAEADGEDDVXXXXXXXXXXXXAGDRETAAAPRPRAPRCAHPDGCGRVAKSGGLCRYHGGGPRCVVPGCPSSAEQAADGRPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTGGPPRXXXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCAFAARYLVQCAPSDEERAALMRRFRFKKLLVMGGEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGDERPDAFHYIADGESEWAIHLEYDEGVKHEKGEGRLAAVADAAGVDPSRVFVVRVQAHHEEPAKAVCARRTKGSHSYFELTRRGEEVVRETAEAVREILGWIRDGTADSRPDASRRW 1551
GEA SR GAEEA DGAAEGPPL S RTGRDR R SRAAP APERAEADGEDDV AGDRET AA RPRAPRCAHPDG GRVAKSGGLCRYHGGGPRCVVPGCPSSAEQAADGRPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTG PPR XXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCA AARYLVQC PSDEER ALMRRFRFKKLLVM GEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGDERPDAFHYIADGESE AIHLEYDEGVKHEKGEGRLAAVADAAGVDP RVFVVRVQAHH+EPAKAVCARRTKGSHSYFELTRRGEEVV ETAEAVREIL WIRDGTADSRPDASR W
Sbjct: 157 GEAGSREGAEEATERVPDATVGARADGGDGAAEGPPLHSAPRTGRDRGRGSRAAPPAAVAPERAEADGEDDVGDGGDG------AGDRETTAASRPRAPRCAHPDGRGRVAKSGGLCRYHGGGPRCVVPGCPSSAEQAADGRPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTGAPPRCXXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCALAARYLVQCVPSDEERVALMRRFRFKKLLVMRGEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGDERPDAFHYIADGESESAIHLEYDEGVKHEKGEGRLAAVADAAGVDPFRVFVVRVQAHHDEPAKAVCARRTKGSHSYFELTRRGEEVVAETAEAVREILSWIRDGTADSRPDASRSW 611
BLAST of jgi.p|Trimin1|349345 vs. uniprot
Match: A0A835ZKX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKX4_9STRA) HSP 1 Score: 479 bits (1233), Expect = 1.560e-161 Identity = 341/381 (89.50%), Postives = 345/381 (90.55%), Query Frame = 1
Query: 430 RETAAAPRPRAPRCAHPDGC---GRVAKSGGLCRYHGGGPRCVVPGCPSSAEQAADGRPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTGGPPRXXXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCAFAARYLVQCAPSDEERAALMRRFRFKKLLVMGGEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGDERPDAFHYIADGESEWAIHLEYDEGVKHEKGEGRLAAVADAAGVDPSRVFVVRVQAHHEEPAKAVCARRTKGSHSYFELTRRGEEVVRETAEAVREILGWIRDGTADSRPDASRRWVINF 1563
RETA P PRAP G ++GG GGPRCVVPGCPSSAEQAADGRPGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTG PPR XXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCAFAARYLVQCAPSDEER ALMRRFRFKKLLVM GEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGD RPDAF YIADGESEWAIHLEYDEGVKHEKGEGRLA VADAAGVDPSRVFVVRVQAHH+EPAKAVCARRTKGSHSYFELTR+GEEVV ETAEAVREIL WIRDGTADSRPDASRRWVINF
Sbjct: 164 RETARPPPPRAPAXXXXXXXXXXGASPRAGGCAATTAGGPRCVVPGCPSSAEQAADGRPGRCVAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGRFXXXXXXXXXXXXXXXXXXXXXXXRRTGAPPRCXXXXXXXXXXXSCCRGVEGLEPSHAPHAHPDDGRRMCAFAARYLVQCAPSDEERVALMRRFRFKKLLVMRGEHAFYHALTKEAPELRLTTRVLDASVRAAAGKIKGTGDGRPDAFQYIADGESEWAIHLEYDEGVKHEKGEGRLADVADAAGVDPSRVFVVRVQAHHDEPAKAVCARRTKGSHSYFELTRQGEEVVAETAEAVREILSWIRDGTADSRPDASRRWVINF 544 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349345 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4518 ID=mRNA_4518|Name=jgi.p|Trimin1|349345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1607bp|location=Sequence derived from alignment at Contig_41:919923..921529- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGGACCAGGAGGTCCGCTGAGGCGGCGGCGGAGGGGGGGGAGGAAGAback to top protein sequence of jgi.p|Trimin1|349345 >Trimin1|349345|estExt_Genemark1.C_Ctg_410141 ID=Trimin1|349345|estExt_Genemark1.C_Ctg_410141|Name=jgi.p|Trimin1|349345|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=522bp MRTRRSAEAAAEGGEEEGGAPPPDAAEDVAAAAAAAAPVRRRCRDRKGTAback to top mRNA from alignment at Contig_41:919923..921529- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4518 ID=mRNA_4518|Name=jgi.p|Trimin1|349345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1607bp|location=Sequence derived from alignment at Contig_41:919923..921529- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_41:919923..921529- >mRNA_4518 ID=mRNA_4518|Name=jgi.p|Trimin1|349345|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1566bp|location=Sequence derived from alignment at Contig_41:919923..921529- (Tribonema minus UTEX_B_3156 )back to top |