mRNA_4461 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A0A835YVR8_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVR8_9STRA) HSP 1 Score: 694 bits (1791), Expect = 1.290e-251 Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 1
Query: 1 MADFLNNPFVAPSSNLTEICFKIRSQLFAAHGLAGRPTGPTGVREVFRQLDKDGSGTMIKSTFEAALAQAGLYEVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHSGQVTAEAFTEYYQSLGELEPIDAVFVSILGRLWRVREQADMDELVKHLALELGEKIRERAKDNETEAESLHWAFKQVHTMDLPSGKFNKAELVRVLEHFGLYGLLHSFIYQLRDXXXXXXXXXXXXXXXXXXXVDSRIVDAMWKDVKSKFDPSNLDGDNLEVSAFVDEVVPIWEKHAQFGGRCDCGVSPDYLLDEPVGYEHD 1116
MADFLNNPFVAPSSNLTEICFKIRSQLFAAHGLAGRPTGPTGVREVFRQLDKDGSGTMIKSTFEAALAQAGLYEVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHSGQVTAEAFTEYYQSLGELEPIDAVFVSILGRLWRVREQADMDELVKHLALELGEKIRERAKDNETEAESLHWAFKQVHTMDLPSGKFNKAELVRVLEHFGLYGLLHSFIYQLRDXXXXXXXXXXXXXXXXXXXVDSRIVDAMWKDVKSKFDPSNLDGDNLEVSAFVDEVVPIWEKHAQFGGRCDCGVSPDYLLDEPVGYEHD
Sbjct: 1 MADFLNNPFVAPSSNLTEICFKIRSQLFAAHGLAGRPTGPTGVREVFRQLDKDGSGTMIKSTFEAALAQAGLYEVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHSGQVTAEAFTEYYQSLGELEPIDAVFVSILGRLWRVREQADMDELVKHLALELGEKIRERAKDNETEAESLHWAFKQVHTMDLPSGKFNKAELVRVLEHFGLYGLLHSFIYQLRDXXXXXXXXXXXXXXXXXXXVDSRIVDAMWKDVKSKFDPSNLDGDNLEVSAFVDEVVPIWEKHAQFGGRCDCGVSPDYLLDEPVGYEHD 372
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A0A7S2UWW3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWW3_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.380e-20 Identity = 74/216 (34.26%), Postives = 103/216 (47.69%), Query Frame = 1
Query: 199 LAQAGLY----EVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHSGQ----VTAEAFTEYYQSLGELEPIDAVFVSILGRLWRVRE--QADMDELVKHLALELGEKIRERAKDNETEAESLHWAFKQVHTMDLPSGKFNKAELVRVLEHFGLY 816
LA G++ E+ +L R F I+Y FL+ + PLNERR +V AF +D G G + + + HP+V +GK+ DQV+EDF FE G VT E F++YY L P D FV+++ + W + E A+MD + L L KI E+ K NE EA L F+ D SG E R LE FG++
Sbjct: 2 LATCGVFLKTPEITTLFRHFDVDGDC--NINYDEFLKGMAPPLNERRLELVRRAFMMMDVDGSGQLTVSDIEG--KFVVDQHPDVATGKIAPDQVLEDFLGSFEGSRQGNADGIVTWEEFSDYYHDLSASIPDDDYFVTVMEQCWMISEAQSAEMDVELDRLEGVLKSKIMEKTKGNEGEASVLRKTFRFFD--DNESGTITMDEFRRALEVFGIF 211
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: CCB23_FAXLI (Crustacean calcium-binding protein 23 n=2 Tax=Cambarinae TaxID=72430 RepID=CCB23_FAXLI) HSP 1 Score: 95.5 bits (236), Expect = 1.680e-19 Identity = 62/180 (34.44%), Postives = 97/180 (53.89%), Query Frame = 1
Query: 88 AHGLAGRPTGPTGVREVFRQLDKDGSGTMIKSTFEAALAQAGLY----EVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHS--GQVTAEAFTEYYQSLGELEPIDAVFVSILGRLW 609
+H L+ +G + +FR+LDKD S T+ K + Q GL ++N L +F K I+Y FL++L+ + E R++ V+AAFK LD G G V LE + +A THP+V+ G+ T D++++ F FE S G+VT + F +YY L + D FVS++ +W
Sbjct: 25 SHCLSQGYSGLLSLGRLFRRLDKDRSWTLSKEELSRGVGQFGLDLSDGDINKLFSSFE--KDGQSGINYEEFLESLRPEMTEPRKKAVEAAFKHLDKTGDGVVGLEDIKG--KYSAKTHPKVVKGEATEDEILKKFLNMFETNTSVDGKVTKKEFFDYYSGLSKAIDEDEYFVSMVNIMW 200
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A0A078AI59_STYLE (Ef hand family protein n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A078AI59_STYLE) HSP 1 Score: 81.3 bits (199), Expect = 1.150e-13 Identity = 57/194 (29.38%), Postives = 101/194 (52.06%), Query Frame = 1
Query: 127 VREVFRQLDKDGSGTMIKSTFEAALAQAGLY----EVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEE---KHSGQVTAEAFTEYYQSLGELEPIDAVFVSILGRLWRVREQADMDELVKHLALELGEKIRER 687
++ +F+++D +G+ + S FE AL GL+ E+ +LM+ + ISY F++ L+ L ERR+++V+ AF+ +D G G + + +++ + +PE I G+ T +Q++ DF FE G ++ E F +YY L P D FV ++ W+ E+ D D VK L +++R R
Sbjct: 34 LKRIFQRMDYNGNKKLDASEFEQALGAFGLFPKKVELQALMKYYDVDGD--GNISYEEFIRGLRDELTERRKKMVEKAFRMMDRDGSGQLNINDLISIYDVSM--NPEFIEGRKTREQILGDFLNNFEGAKGNRDGIISKEEFFDYYTDLSMSVPSDEYFVRMMESTWQCPEE-DNDGAVKATVQMLLKEVRLR 222
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A0A7S3FU10_9SPIT (Hypothetical protein n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3FU10_9SPIT) HSP 1 Score: 81.3 bits (199), Expect = 3.240e-13 Identity = 56/180 (31.11%), Postives = 90/180 (50.00%), Query Frame = 1
Query: 124 GVREVFRQLDKDGSGTMIKSTFEAALAQAGLY----EVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHSGQ--------VTAEAFTEYYQSLGELEPIDAVFVSILGRLWRVREQA 627
G++ F+ +D D S + F AL+ GL E ++ F + I Y F++A++ P+N R+++V A+KSLD G G V + V A HP+VISGK T DQ++++F FE HS + VT E F EYY ++ D F+ ++ W++ E++
Sbjct: 3 GLQRTFKIMDDDNSKNLNMYEFCKALSDYGLGFSKGEQQAIFNYFDVDNSGT--IIYDEFIRAVRGPMNMARKKIVAQAYKSLDKDGNGWVDINDVRGVYN--ARKHPDVISGKKTEDQILQEFLETFETAHSMRENGAPDHVVTREEFEEYYNNVSCSIDDDMYFMLMINNAWKLTEES 178
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: B5M6G5_CYRSC (EF-hand protein-like protein n=1 Tax=Cyriopagopus schmidti TaxID=29017 RepID=B5M6G5_CYRSC) HSP 1 Score: 73.2 bits (178), Expect = 1.290e-11 Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = 1
Query: 103 GRPTGPTGVREVFRQLDKDGSGTMIKSTFEAALAQAGLYEVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHS--GQVTAEAFTEYYQSLGELEPIDAVFVSILGRLWRV 615
G P+ V +F++LD+DGSG+ IS+ FL+A++ PL++ R +++ AF +D G G V L+ V A HP+VI+GK D+V+ +F FE ++ G+VT + F +YY + +D FV+++ + W++
Sbjct: 51 GADIQPSEVESLFKELDRDGSGS----------------------------------ISFDEFLRAVRPPLSQDRLDMIEKAFAKMDKTGDGVVNLQDLKGVYN--AREHPDVIAGKKNEDKVLVEFLENFETPNNPDGKVTKQEFIDYYTGVSSSIDLDEYFVTMMQKAWQL 187
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A0A7S1IDI7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IDI7_9EUGL) HSP 1 Score: 73.9 bits (180), Expect = 7.600e-11 Identity = 50/187 (26.74%), Postives = 92/187 (49.20%), Query Frame = 1
Query: 67 IRSQLFAAHGLAGRPTGPTGVREVFRQLDKDGSGTMIKSTFEAALAQAGLY----EVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHSGQVTAEAFTEYYQSLGELEPIDAVFVSILGRLWRV 615
++++L G P + VFR +D G+ + + ++ +A G+Y E+ L F + + +I FL L ++ R+ + AAF LD G GTV ++ VL+ HPEV++G++TA++V +F A ++ G +T + F EYY+ + + D F +L + W++
Sbjct: 162 VKAKLMERAGAGSLPA----LARVFRVMDDSGNNKLDRMEMQSGMATFGVYLTADELEVLFDYFDSDNS--GQIHVDEFLSFLVPDMSLGRKNLCQAAFNLLDVNGDGTVTIDEL--VLKFHTDEHPEVLAGRMTAEEVTAEFAAAWDTSGDGIITFDEFCEYYKHMSSMITNDEYFEVMLKKSWQL 340
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A0A4Y2NB09_ARAVE (Calcyphosin-like protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NB09_ARAVE) HSP 1 Score: 69.3 bits (168), Expect = 2.850e-10 Identity = 44/165 (26.67%), Postives = 80/165 (48.48%), Query Frame = 1
Query: 127 VREVFRQLDKDGSGTMIKSTFEAALAQAGLYEVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFE--EKHSGQVTAEAFTEYYQSLGELEPIDAVFVSILGRLWRV 615
V E+F++LDKD SGT +S+ FL+A++ L + R V++ AF +D G G+V L+ V + HP+V++GK + D+V+ +F + F+ K G+V+ + F +YY + +D FV+++ + W++
Sbjct: 58 VAELFKELDKDESGT----------------------------------VSFEEFLKAVRPALPQERLDVIEKAFSKMDKTGDGSVTLDDLKGVY--SGKEHPDVVAGKKSEDEVLLEFLSSFDTPNKSDGKVSKQEFIDYYAGVSASIDLDEYFVTMMEKAWQL 186
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A0A1W7RAM7_9SCOR (EF-hand protein-like protein n=1 Tax=Hadrurus spadix TaxID=141984 RepID=A0A1W7RAM7_9SCOR) HSP 1 Score: 68.9 bits (167), Expect = 3.970e-10 Identity = 42/163 (25.77%), Postives = 75/163 (46.01%), Query Frame = 1
Query: 133 EVFRQLDKDGSGTMIKSTFEAALAQAGLYEVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFEEKHS--GQVTAEAFTEYYQSLGELEPIDAVFVSILGRLWRV 615
++FR++DKDGSGT+ + FL+A++ P+++ R ++D AF +D G G + +E V +T HP+ IS ++T D++ E+F F+ + G++T E F YY + D FV ++ W++
Sbjct: 61 QLFREIDKDGSGTL----------------------------------HFDEFLRAIRPPMSKTRLDLIDQAFAKMDKTGDGVITIEDLRGVYNATY--HPKFISTEMTEDEIFEEFLRSFDTPNDPDGKITREDFLNYYAGVSASIDTDEYFVEMMTSAWKL 187
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A9QQB7_LYCSI (Calcium-dependent protein kinase isoform ak1 n=1 Tax=Lycosa singoriensis TaxID=434756 RepID=A9QQB7_LYCSI) HSP 1 Score: 67.4 bits (163), Expect = 1.030e-9 Identity = 43/142 (30.28%), Postives = 69/142 (48.59%), Query Frame = 1
Query: 127 VREVFRQLDKDGSGTMIKSTFEAALAQAGLYEVNSLMRAFPAPKAVVERISYPAFLQALQLPLNERRRRVVDAAFKSLDTAGKGTVPLESALAVLRSTAVTHPEVISGKLTADQVIEDFKAFFE--EKHSGQVTAEAFTEYY 546
V E+F+++DKDGSGT +S FL+A++ PL++ R +++ AF +D G G+V ++ V + HP+VI GK T DQ++E+F F+ K G+VT + F +YY
Sbjct: 57 VAELFKEIDKDGSGT----------------------------------VSLEEFLRAVRPPLSQDRLDIIERAFVKMDKTGDGSVTIDDLKGVY--SGKEHPDVIDGKKTEDQILEEFLQSFDTPNKGDGKVTKQEFIDYY 162
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Match: A0A835YVD0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD0_9STRA) HSP 1 Score: 142 bits (359), Expect = 5.030e-41 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 2
Query: 140 MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA 493
MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA
Sbjct: 1 MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA 118 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349333 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|349333 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4461 ID=mRNA_4461|Name=jgi.p|Trimin1|349333|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1119bp|location=Sequence derived from alignment at Contig_41:678512..688368- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGGACTTCTTGAACAATCCTTTCGTGGCGCCGTCCTCCAACCTCACback to top protein sequence of jgi.p|Trimin1|349333 >Trimin1|349333|estExt_Genemark1.C_Ctg_410076 ID=Trimin1|349333|estExt_Genemark1.C_Ctg_410076|Name=jgi.p|Trimin1|349333|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=373bp MADFLNNPFVAPSSNLTEICFKIRSQLFAAHGLAGRPTGPTGVREVFRQLback to top mRNA from alignment at Contig_41:678512..688368- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4461 ID=mRNA_4461|Name=jgi.p|Trimin1|349333|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9857bp|location=Sequence derived from alignment at Contig_41:678512..688368- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_41:678512..688368- >mRNA_4461 ID=mRNA_4461|Name=jgi.p|Trimin1|349333|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1119bp|location=Sequence derived from alignment at Contig_41:678512..688368- (Tribonema minus UTEX_B_3156 )back to top |