mRNA_4393 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349296
Unique NamemRNA_4393
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349296 vs. uniprot
Match: A0A835YSS5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS5_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.480e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:    3 EAAAACQQRCCGAAAAGRRHREGPCEPRTDHQRPCALSRAALSTAAWCRALLRTEGKQPARVGRGACASSWGGGGAGGVYCVKYTERSAPRSPTTFRFHLSFPC 314
            EAAAACQQRCCGAAAAGRRHREGPCEPRTDHQRPCALSRAALSTAAWCRALLRTEGKQPARVGRGACASSWGGGGAGGVYCVKYTERSAPRSPTTFRFHLSFPC
Sbjct:    1 EAAAACQQRCCGAAAAGRRHREGPCEPRTDHQRPCALSRAALSTAAWCRALLRTEGKQPARVGRGACASSWGGGGAGGVYCVKYTERSAPRSPTTFRFHLSFPC 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349296 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YSS5_9STRA2.480e-71100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:85841..86908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349296|estExt_Genemark1.C_Ctg_410012
Hectar predicted targeting categoryother localisation
TranscriptId349618
TrackFilteredModels1
ProteinId349296
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349296gene_4393Tribonema minus UTEX_B_3156 geneContig_41 85841..86908 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4393_2exon_4393_2Tribonema minus UTEX_B_3156 exonContig_41 85841..86144 -
exon_4393_1exon_4393_1Tribonema minus UTEX_B_3156 exonContig_41 86897..86908 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4393UTR3_4393Tribonema minus UTEX_B_3156 three_prime_UTRContig_41 85841..85842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4393CDS_4393Tribonema minus UTEX_B_3156 CDSContig_41 86897..86906 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4393UTR5_4393Tribonema minus UTEX_B_3156 five_prime_UTRContig_41 86907..86908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349296Trimin1|349296|estExt_Genemark1.C_Ctg_410012Tribonema minus UTEX_B_3156 polypeptideContig_41 85843..86906 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4393 ID=mRNA_4393|Name=jgi.p|Trimin1|349296|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=316bp|location=Sequence derived from alignment at Contig_41:85841..86908- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGCCGCTGCGTGTCAGCAGCGCTGCTGCGGCGCAGCGGCGGCC
GGCAGGCGTCACCGAGAGGGGCCCTGCGAACCGCGCACGGACCATCAACG
TCCGTGCGCGCTCAGCCGCGCCGCGCTGAGCACTGCTGCATGGTGCCGAG
CGCTGCTGCGAACTGAGGGAAAACAACCCGCGCGTGTCGGACGAGGCGCG
TGTGCCTCGTCTTGGGGGGGGGGGGGGGCTGGGGGGGTATACTGTGTCAA
GTATACAGAAAGGAGTGCACCCAGGTCCCCGACTACTTTCAGGTTCCATC
TGTCTTTTCCGTGTGT
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protein sequence of jgi.p|Trimin1|349296

>Trimin1|349296|estExt_Genemark1.C_Ctg_410012 ID=Trimin1|349296|estExt_Genemark1.C_Ctg_410012|Name=jgi.p|Trimin1|349296|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
EAAAACQQRCCGAAAAGRRHREGPCEPRTDHQRPCALSRAALSTAAWCRA
LLRTEGKQPARVGRGACASSWGGGGAGGVYCVKYTERSAPRSPTTFRFHL
SFPC
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mRNA from alignment at Contig_41:85841..86908-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4393 ID=mRNA_4393|Name=jgi.p|Trimin1|349296|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1068bp|location=Sequence derived from alignment at Contig_41:85841..86908- (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCGGTGAGCGTTGGCAGGCTGGGCTACTTACAATACGTTGC
TCCTGTGCCTTACGCGGCCTCACTAAGTGTCACTCAGCTGGTATGCTGCC
CTGCGGCTCAATTTTTCTATGCGCCAGCACACTGGAAGGGGAACCCTAGT
TGTGGCCCTCCTACCAATTCTTGGTTTTGTGTCGCACCTTATGAAACACG
AGGAAACGAGAGGCACAAAAATTGGAATTGGTGGGAAAGCCCTACCTTCC
CCCCCCTACTTATCAACACCACTGATTCCAGAGAATTAAGTCTCATGCGC
CACTGCTTCACAAGAACACAACTAGCAAGCACCTGTAAATTCAAGCAAGC
TGAAATGAATGCTGCTCAGAGTGAAACTGCTTTTGTGTACCTAATCAGCC
TTCAGCTTCCAGGGAAAAAGTGCATCAATGTTTTTCCTGCGCGCGCCGCT
ACGACAGAGCACAAGCGGTGGGGAGTACTGCAGCTGCGCAGCAGCCACTC
TGCCACATGTCAGGCTTGCAGCGTGGCACATCTGATGTTGGACGTGGGAG
TCAGCAAACCACACCAGACACGAAGAAGCGGAAGACCACGCCAGCGTAGT
ACAGGAAATGTACAACATACATTATTGACGAGGGGCAGACGGAGAGAGGG
GGGCAGTGGTGATGCAGAGAGCACCCACTTAGAATCCCCCCTCTCCCGCT
TTCCTCACCATATCGAAGAGTGCGCGCAAAGCGCACCGCGAAACGCCGGC
TGCGCGGCCGCCAGCTGCGTGTCAGCAGCGCTGCTGCGGCGCAGCGGCGG
CCGGCAGGCGTCACCGAGAGGGGCCCTGCGAACCGCGCACGGACCATCAA
CGTCCGTGCGCGCTCAGCCGCGCCGCGCTGAGCACTGCTGCATGGTGCCG
AGCGCTGCTGCGAACTGAGGGAAAACAACCCGCGCGTGTCGGACGAGGCG
CGTGTGCCTCGTCTTGGGGGGGGGGGGGGGCTGGGGGGGTATACTGTGTC
AAGTATACAGAAAGGAGTGCACCCAGGTCCCCGACTACTTTCAGGTTCCA
TCTGTCTTTTCCGTGTGT
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Coding sequence (CDS) from alignment at Contig_41:85841..86908-

>mRNA_4393 ID=mRNA_4393|Name=jgi.p|Trimin1|349296|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_41:85841..86908- (Tribonema minus UTEX_B_3156 )
GAAGCTGCCGCTGCGTGTCAGCAGCGCTGCTGCGGCGCAGCGGCGGCCGG
CAGGCGTCACCGAGAGGGGCCCTGCGAACCGCGCACGGACCATCAACGTC
CGTGCGCGCTCAGCCGCGCCGCGCTGAGCACTGCTGCATGGTGCCGAGCG
CTGCTGCGAACTGAGGGAAAACAACCCGCGCGTGTCGGACGAGGCGCGTG
TGCCTCGTCTTGGGGGGGGGGGGGGGCTGGGGGGGTATACTGTGTCAAGT
ATACAGAAAGGAGTGCACCCAGGTCCCCGACTACTTTCAGGTTCCATCTG
TCTTTTCCGTGT
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