mRNA_4536 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166008
Unique NamemRNA_4536
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A836CKL4_9STRA (Putative caspase-1, p20 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL4_9STRA)

HSP 1 Score: 483 bits (1242), Expect = 7.170e-172
Identity = 244/255 (95.69%), Postives = 249/255 (97.65%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGTDAELRGCFADGERLKAALVSAGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTRYGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLIPKRHAFMPDLKARSGPA 765
            MSSRALLLCNNYVGTDAELRGC  DG+ LKAALVS+GAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGD ETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGT+YGGALTDCLLRSLRDVPEARGDVFRLVHET +RL EGGFDQVPVLSSSFLIP+RHAFMPDLKARSGPA
Sbjct:    1 MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDLKARSGPA 255          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A836CI31_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI31_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.790e-69
Identity = 120/245 (48.98%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAELRGCFADGERLKAALVSAGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTRYGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLIPKRHAFMP 738
            SRAL +  NY G+ + L+GC  D + L A L ++GAV    +++L EA+AA     L +LA++ ++++L Y FI+YSGHGTQV D + DE DG DE ICP DF  +GV++DD+L+   A F   T+V F+CDACHSGSMLDL  +Y       +G  S +  +V+MISGCRD+QTSADAF    + Y GA+T  +L+SL++V   R DV RLV E  K L  GGF Q PVLS+SF +P++ AF+P
Sbjct:    5 SRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNS-LACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIP 248          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A835Z623_9STRA (Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z623_9STRA)

HSP 1 Score: 215 bits (547), Expect = 2.680e-66
Identity = 119/247 (48.18%), Postives = 159/247 (64.37%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAELRGCFADGERLKAALVSAGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTR-YGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLIPKRHAFMPDL 744
            S+AL +  NY  T   L+GC  D + L+  LV +GAV    + VL E +  D   A+  LA  S+ + L Y+FI+YSGHGTQ++D  GDE DG DEAICP DF T GV++DDLL+ +   F   T+V F+ DACHSGSMLDL  +Y  R C  +G A+  G+ +  ISGCRD+QTSADAF   +R + GA+T  L+++ +   E   DVF LV +  K L  GG+ Q+PVLSSSF IP++ AF+P L
Sbjct:    4 SKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEDICNAISKLAELSKSQDLDYIFISYSGHGTQIKDTTGDETDGKDEAICPADFGTRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGEATLPGK-IAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAHKVDEETHHDVFALVADMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHL 249          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A835YZ34_9STRA (Caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ34_9STRA)

HSP 1 Score: 207 bits (526), Expect = 3.230e-62
Identity = 116/245 (47.35%), Postives = 155/245 (63.27%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAELRGCFADGERLKAALVSAGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTR-YGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLIPKRHAFMP 738
            S+AL +  NY  T   L+GC  D + L+  LV +GAV    + VL E +  +   A+  LA  S+ + L Y FI+YSGHGTQ++D  GDE DG DEAICP DF   GV++DDLL+ +   F   T+V F+ DACHSGSMLDL  +Y  R C  +G A+  G+ +  ISGCRD+QTSADAF   +R + GA+T  L+++ +   E   DVF LV    K L  GG+ Q+PVLSSSF IP++ AF+P
Sbjct:    4 SKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGK-IAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIP 247          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A835ZCN1_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN1_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.360e-59
Identity = 113/245 (46.12%), Postives = 149/245 (60.82%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAELRGCFADGERLKAALVSAGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTR-YGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLIPKRHAFMP 738
            SRAL +  NY  T   L+GC  D   L   L  +GAV    + VL E +  +   A+  LA  S  + L YVFI+YSGHGTQV+D  GDEADG DEAICP DF   GV++DDLL+ +   F   T+V F+ DACHSGS+LD+   Y  + C  +G A   G+ +  ISGCRD QTSADA+   +R Y G +T   ++S +  P  R DVF+LV E  K L   G+ Q+PVL++SF IP+  +F+P
Sbjct:    4 SRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGK-IAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIP 247          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A6C0BGG3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BGG3_9ZZZZ)

HSP 1 Score: 167 bits (422), Expect = 2.150e-47
Identity = 96/256 (37.50%), Postives = 148/256 (57.81%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGT-DAELRGCFADGERLKAALVSAGAVPEGRVRVLRE------ASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDG-RRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTRYGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLIPKRHAFMP 738
            M  RALL   NY  + DA+L GC  D   +   L +   +P   V+V  +       SA   +  L +LA +S  E+L +V++ YSGHG+ + D  GDE DG DE + P D+  +G++SDD +  +F  F   T V+ V D CHSG++ D+++S++G + CA       +  R++ +SGC D+QTSADA   LG  +Y GALT CLL  L++ P+ + DVF+++     +L E GF Q+P L S++ + +   F+P
Sbjct:    1 MRGRALLFGLNYATSPDAKLNGCINDVINISKYLNTNLGIP---VKVCTDDGDTYSTSAMGIIRNLYELALQSYSEKLDFVWVHYSGHGSYIVDKSGDEKDGKDECLVPSDYAKSGMISDDFINTLFGYFNPNTRVICVFDCCHSGTIGDVKYSWEGPKTCAVENILCSIPARIITLSGCFDNQTSADAHNVLGDNKYVGALTSCLLMVLKEQPQVKNDVFQMIANLRTKLRERGFSQLPKLCSTYNLARDKVFIP 253          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A835XKF2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKF2_9CHLO)

HSP 1 Score: 157 bits (397), Expect = 2.810e-43
Identity = 102/256 (39.84%), Postives = 144/256 (56.25%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAE-LRGCFADGERLKAALVSA-GAVPEGRVRVLREASAADAVAA------LEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFL--GGTRYGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSF--LIPKRHAFMP 738
            +RALL   NY    +  L+GC  D + +KA L++  GA     V     A+   A +A      L +LA  + +E L +V+I YSGHGT+V D   DE DG DE + P D+ TAGV+ DD L ++F  F  +T V+ V D+CHSG+++DL++S++GR C    + S V   ++ +SGC DSQTSADA+   G  +Y GA+T  +L  L+    A  D F LV      L E  F Q P L SSF  ++P   A +P
Sbjct:   29 ARALLFGLNYAHMPSSALQGCINDVQNMKAYLMNRLGAELVCDVATDDTAAGRTATSAMGMTRKLSELAVLTYKEDLEFVWIHYSGHGTRVVDRSKDELDGYDECLVPSDYTTAGVIPDDYLAKLFEQFNPKTRVIAVFDSCHSGTVVDLKYSWEGRACTMENSNSRVRAPIMALSGCLDSQTSADAYNVDGQRQYTGAMTSVMLHVLQTTGAAADDAFLLVDAMRAHLREQNFTQWPKLCSSFSLVLPSSRAMLP 284          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A6C0CTM3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CTM3_9ZZZZ)

HSP 1 Score: 138 bits (347), Expect = 2.910e-36
Identity = 93/260 (35.77%), Postives = 127/260 (48.85%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGT-DAELRGCFADGERLKAALVSAGAVPEGRVRVLREASAADAVAALED------------------LARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSY-DGRRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTRYGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLI 714
            M S+A+L   NY  T  A LRGC  D   +               + L+E +  D V A  D                  LA  S    L  V+I YSGHG  + D DGDE+DG DE I P D+   GV++DDL++RV   F  RT V  + D CHSG++ DL++ Y D     +  A S     ++++SGC D QTSADA+   G   + GA+T CLL ++    E   + F +  +  K L    F QVP L+SSF +
Sbjct:    1 MKSKAILFGINYNNTPQARLRGCVNDVRNM--------------AKFLKEKAKYDVVKAYTDDDDFNKVTGSYIINSIYKLAIDSHRHNLDRVWIHYSGHGCAINDRDGDESDGKDECIVPADYNYRGVITDDLIKRVLRYFNKRTQVTCIFDCCHSGTIGDLKYEYRDPHVYREENAKSKCQSNIMLLSGCMDHQTSADAYNVRGRREFSGAMTSCLLVAM----ENSSNAFEVFDDLKKMLRAKRFTQVPRLTSSFKV 242          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A7M3UPF5_POV01 (Uncharacterized protein n=1 Tax=Pyramimonas orientalis virus TaxID=455367 RepID=A0A7M3UPF5_POV01)

HSP 1 Score: 137 bits (346), Expect = 4.660e-36
Identity = 97/259 (37.45%), Postives = 132/259 (50.97%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGT-DAELRGCFAD----------GERLKAALVSAGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADG--DEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYD--GRRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTRYGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLIPKRH 726
            M S+A+L   NYV T  A LRGC  D           E+     V +    E + R          V ++  LA  S   RL  V+I +SGHGT VRD+ G  DE+DG DE I P D+   GV+ DD ++R+   F   T V  V D CHSG++ DL++ Y    R        S     + +ISGC DSQTSADAF   G  +Y GA+T CLL  L++  E+   +F ++      L +  F Q P+LSSSF +P+ +
Sbjct:    1 MKSKAILFGINYVNTPQARLRGCVNDVKNVAKYLTKEEKYDVVKVYSDEADETKTR------GQSIVNSMYKLAIDSHRYRLERVWIHFSGHGTHVRDSYGYRDESDGNDECIVPSDYNRCGVIRDDTIKRILRMFNPTTKVTCVFDCCHSGTIGDLKYVYKKIDRTPEIENNGSKCMANICLISGCTDSQTSADAFNVQGKRQYTGAMTSCLLEVLKN--ESDKSIFNVLESLRDLLRQKRFPQYPLLSSSFEVPQNY 251          
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Match: A0A6C0E8Z1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E8Z1_9ZZZZ)

HSP 1 Score: 135 bits (339), Expect = 6.560e-35
Identity = 85/243 (34.98%), Postives = 129/243 (53.09%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGTDAELRGCFADGERLKAALVSAGAVPEGRVRVLRE-------ASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSY-DGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTRYGGALTDCLLRSLRDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSS 705
            MS  ALL+  NY GT  EL GC  D   ++  L+         + V+ E        +A + +     L  ++  ++   ++  YSGHG+ + D +GDE DG DE I P D+E +G++SDDLL          T    + D CHSG++LDL+  Y  G +       S +  +V+MISGC+D QTSADA +G T++ GA+T   L+S+ ++ E +   + L+      L E  +DQ+P LSSS
Sbjct:    1 MSKFALLIGINYKGTSNELNGCINDVTNMRDVLIKNFGYLAENIVVMTEDQPNNLKPTALNIMNQFGSLIIKAHHKQAKEIWFHYSGHGSYIDDTNGDELDGKDEVIVPLDYEKSGMISDDLLHNYMEYLPVETRFFCLFDCCHSGTILDLKHRYLGGNKHHTENNKSKIKGKVVMISGCKDDQTSADALIG-TKWSGAMTAAFLKSM-ELCEYKTTYYHLLDLMRDYLRENKYDQIPQLSSS 241          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166008 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKL4_9STRA7.170e-17295.69Putative caspase-1, p20 n=2 Tax=Tribonema minus Ta... [more]
A0A836CI31_9STRA2.790e-6948.98Peptidase C14, caspase domain-containing protein n... [more]
A0A835Z623_9STRA2.680e-6648.18Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A835YZ34_9STRA3.230e-6247.35Caspase domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZCN1_9STRA2.360e-5946.12Peptidase C14, caspase domain-containing protein n... [more]
A0A6C0BGG3_9ZZZZ2.150e-4737.50Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A835XKF2_9CHLO2.810e-4339.84Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A6C0CTM3_9ZZZZ2.910e-3635.77Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7M3UPF5_POV014.660e-3637.45Uncharacterized protein n=1 Tax=Pyramimonas orient... [more]
A0A6C0E8Z1_9ZZZZ6.560e-3534.98Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:984969..985736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166008|e_gw1.41.28.1
DescriptionICE family protease (Caspase) p20 domain-containing protein
COG categoryDO
Max annot lvl5794|Apicomplexa
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota,3YA4C@5794|Apicomplexa
Evalue2.62e-28
Seed ortholog110365.A0A023B2B8
Hectar predicted targeting categoryother localisation
TranscriptId166330
TrackFilteredModels1
ProteinId166008
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166008gene_4536Tribonema minus UTEX_B_3156 geneContig_41 984969..985736 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4536_1exon_4536_1Tribonema minus UTEX_B_3156 exonContig_41 984969..985736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4536CDS_4536Tribonema minus UTEX_B_3156 CDSContig_41 984969..985736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166008Trimin1|166008|e_gw1.41.28.1Tribonema minus UTEX_B_3156 polypeptideContig_41 984969..985736 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4536 ID=mRNA_4536|Name=jgi.p|Trimin1|166008|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_41:984969..985736- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCCGCGCCCTGCTGCTCTGCAACAACTACGTCGGCACGGATGC
CGAGCTCCGCGGCTGCTTCGCCGACGGCGAGAGGCTCAAGGCGGCGCTGG
TCTCGGCGGGAGCGGTCCCGGAGGGTCGCGTCCGCGTGCTGCGCGAGGCC
TCCGCCGCCGACGCCGTCGCCGCCCTCGAGGACCTCGCACGCCGGTCCCG
CGAGGAGAGGCTCGCGTACGTCTTCATCGCCTACTCCGGCCACGGCACCC
AGGTGCGCGACGCGGACGGGGACGAGGCCGACGGCCTGGACGAGGCCATC
TGCCCGGGGGACTTCGAGACCGCGGGCGTCGTGTCCGACGACCTCCTCAG
GCGCGTCTTCGCGGGCTTCTACTACCGCACCTCCGTCGTCTTCGTCTGCG
ACGCCTGCCACAGCGGCTCGATGCTGGACCTCAGGTTCTCGTACGACGGC
AGGAGGTGCGCGGACGCGGGGGCCGCGTCGGACGTCGGCCGCCGCGTCCT
GATGATCTCCGGCTGCAGGGACTCCCAGACGAGCGCCGACGCGTTCCTGG
GCGGCACGCGGTACGGGGGGGCCCTCACGGACTGCCTGCTGAGGTCGCTG
AGGGACGTCCCCGAGGCGCGGGGGGACGTCTTCCGCCTCGTCCACGAGAC
CTCCAAGAGGCTGGGGGAGGGCGGGTTCGACCAGGTCCCCGTGCTGAGCT
CGTCGTTCCTGATCCCGAAGCGCCACGCCTTCATGCCCGACCTGAAGGCG
CGGTCCGGTCCCGCCTGA
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protein sequence of jgi.p|Trimin1|166008

>Trimin1|166008|e_gw1.41.28.1 ID=Trimin1|166008|e_gw1.41.28.1|Name=jgi.p|Trimin1|166008|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp
MSSRALLLCNNYVGTDAELRGCFADGERLKAALVSAGAVPEGRVRVLREA
SAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAI
CPGDFETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDG
RRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTRYGGALTDCLLRSL
RDVPEARGDVFRLVHETSKRLGEGGFDQVPVLSSSFLIPKRHAFMPDLKA
RSGPA*
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mRNA from alignment at Contig_41:984969..985736-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4536 ID=mRNA_4536|Name=jgi.p|Trimin1|166008|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_41:984969..985736- (Tribonema minus UTEX_B_3156 )
ATGTCGTCCCGCGCCCTGCTGCTCTGCAACAACTACGTCGGCACGGATGC CGAGCTCCGCGGCTGCTTCGCCGACGGCGAGAGGCTCAAGGCGGCGCTGG TCTCGGCGGGAGCGGTCCCGGAGGGTCGCGTCCGCGTGCTGCGCGAGGCC TCCGCCGCCGACGCCGTCGCCGCCCTCGAGGACCTCGCACGCCGGTCCCG CGAGGAGAGGCTCGCGTACGTCTTCATCGCCTACTCCGGCCACGGCACCC AGGTGCGCGACGCGGACGGGGACGAGGCCGACGGCCTGGACGAGGCCATC TGCCCGGGGGACTTCGAGACCGCGGGCGTCGTGTCCGACGACCTCCTCAG GCGCGTCTTCGCGGGCTTCTACTACCGCACCTCCGTCGTCTTCGTCTGCG ACGCCTGCCACAGCGGCTCGATGCTGGACCTCAGGTTCTCGTACGACGGC AGGAGGTGCGCGGACGCGGGGGCCGCGTCGGACGTCGGCCGCCGCGTCCT GATGATCTCCGGCTGCAGGGACTCCCAGACGAGCGCCGACGCGTTCCTGG GCGGCACGCGGTACGGGGGGGCCCTCACGGACTGCCTGCTGAGGTCGCTG AGGGACGTCCCCGAGGCGCGGGGGGACGTCTTCCGCCTCGTCCACGAGAC CTCCAAGAGGCTGGGGGAGGGCGGGTTCGACCAGGTCCCCGTGCTGAGCT CGTCGTTCCTGATCCCGAAGCGCCACGCCTTCATGCCCGACCTGAAGGCG CGGTCCGGTCCCGCCTGA
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Coding sequence (CDS) from alignment at Contig_41:984969..985736-

>mRNA_4536 ID=mRNA_4536|Name=jgi.p|Trimin1|166008|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=768bp|location=Sequence derived from alignment at Contig_41:984969..985736- (Tribonema minus UTEX_B_3156 )
ATGTCGTCCCGCGCCCTGCTGCTCTGCAACAACTACGTCGGCACGGATGC
CGAGCTCCGCGGCTGCTTCGCCGACGGCGAGAGGCTCAAGGCGGCGCTGG
TCTCGGCGGGAGCGGTCCCGGAGGGTCGCGTCCGCGTGCTGCGCGAGGCC
TCCGCCGCCGACGCCGTCGCCGCCCTCGAGGACCTCGCACGCCGGTCCCG
CGAGGAGAGGCTCGCGTACGTCTTCATCGCCTACTCCGGCCACGGCACCC
AGGTGCGCGACGCGGACGGGGACGAGGCCGACGGCCTGGACGAGGCCATC
TGCCCGGGGGACTTCGAGACCGCGGGCGTCGTGTCCGACGACCTCCTCAG
GCGCGTCTTCGCGGGCTTCTACTACCGCACCTCCGTCGTCTTCGTCTGCG
ACGCCTGCCACAGCGGCTCGATGCTGGACCTCAGGTTCTCGTACGACGGC
AGGAGGTGCGCGGACGCGGGGGCCGCGTCGGACGTCGGCCGCCGCGTCCT
GATGATCTCCGGCTGCAGGGACTCCCAGACGAGCGCCGACGCGTTCCTGG
GCGGCACGCGGTACGGGGGGGCCCTCACGGACTGCCTGCTGAGGTCGCTG
AGGGACGTCCCCGAGGCGCGGGGGGACGTCTTCCGCCTCGTCCACGAGAC
CTCCAAGAGGCTGGGGGAGGGCGGGTTCGACCAGGTCCCCGTGCTGAGCT
CGTCGTTCCTGATCCCGAAGCGCCACGCCTTCATGCCCGACCTGAAGGCG
CGGTCCGGTCCCGCCTGA
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