mRNA_4487 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|165907
Unique Name	mRNA_4487
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A835Z2E4_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E4_9STRA)

HSP 1 Score: 439 bits (1129), Expect = 4.100e-156
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFVSGLRNFEDLTS 633
            IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFVSGLRNFEDLTS
Sbjct:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFVSGLRNFEDLTS 211

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A835ZIN4_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIN4_9STRA)

HSP 1 Score: 402 bits (1032), Expect = 3.050e-138
Identity = 191/204 (93.63%), Postives = 198/204 (97.06%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFVSGLR 612
            IADGACDDAVRKLAR IAAKGETVWIRMMHE NGE TYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMA+NPGGDKDRTPFSAFNPG+DYF QVGVDVYVNAAKRMPSLKEKLND +YAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYV+WFLE KSPAPTRSWGLH++AEIDAFVSG+R
Sbjct:  207 IADGACDDAVRKLARDIAAKGETVWIRMMHEFNGEKTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMAKNPGGDKDRTPFSAFNPGQDYFHQVGVDVYVNAAKRMPSLKEKLNDNVYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVNWFLEDKSPAPTRSWGLHSRAEIDAFVSGMR 410

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A836CH71_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH71_9STRA)

HSP 1 Score: 340 bits (872), Expect = 6.780e-115
Identity = 161/211 (76.30%), Postives = 176/211 (83.41%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFVSGLRNFEDLTS 633
            IADG  DD VR LARAIA KG  VWIR +HE N E TYPW LYP+T  K+ATFKRAWRR+VS+YREERAPVKFQL FMA+NPGGDKDRTPFSAFNPGRDY D VGVDVYVNAAK MPSLKEKLNDGIY QLLWFGKP+FIGEMSVT  +PDRP WI +AW +LALDFPR+KY+SWFLE K     R W L  Q EIDAFV+GLRNF++LTS
Sbjct:  140 IADGCYDDEVRSLARAIADKGVNVWIRFLHEFNSENTYPWCLYPFTDAKIATFKRAWRRIVSIYREERAPVKFQLCFMAKNPGGDKDRTPFSAFNPGRDYVDAVGVDVYVNAAKHMPSLKEKLNDGIYEQLLWFGKPIFIGEMSVTTKIPDRPQWIFDAWHALALDFPRIKYISWFLECKGDK--RPWCLLKQEEIDAFVTGLRNFKELTS 348

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A835YSC6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC6_9STRA)

HSP 1 Score: 260 bits (665), Expect = 7.460e-85
Identity = 126/211 (59.72%), Postives = 160/211 (75.83%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFVSGLRNFEDLTS 633
            IA+G  D  VRKLAR IA KG+TVWIRM+HE N + TY W LYP+T +K+  FKRAWRR+V++Y ++ APV+FQL F+  N  GDK  TPFSAFNPGR+Y DQVGVDVY+N   ++ SLKE+L++GIY QLLWF KP+F GE+  T ++ DR  W+R+AWRSLALDFP+VK VS+FLE + P   R W L  Q+EI+ FV GL+ F+ LTS
Sbjct:   46 IANGCYDTEVRKLARDIARKGDTVWIRMLHEFNSD-TYVWGLYPFTTDKIRAFKRAWRRIVNIYCDQGAPVQFQLCFLGTNSSGDK--TPFSAFNPGRNYVDQVGVDVYINTNSKLVSLKERLDNGIYDQLLWFNKPIFFGEIGCTPAIGDRGKWMRDAWRSLALDFPQVKAVSYFLECEGPQ--RPWCLTKQSEINGFVQGLKEFKRLTS 251

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A836CC94_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC94_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.140e-78
Identity = 123/200 (61.50%), Postives = 151/200 (75.50%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFV 600
            IA+G  DDAVR+LA+ IA KG+TVWIRM+HE N   TY W LYP++ E + TFK+AW+R+V +YREE APVKFQL F+  N  GDK  TPF AFNPG  + DQVGVDVYVNA  +M SL+E+L+ GIY  LL FGKP+FIGE+ VT ++ DR  WI++AW+SLA+DF RV  VS+FLE KS   TR W L NQ EI+AFV
Sbjct:   65 IANGCYDDAVRRLAKDIAKKGDTVWIRMLHEFNSN-TYVWGLYPFSDESIRTFKKAWQRIVKIYREENAPVKFQLCFLGSNTHGDK--TPFIAFNPGSSFVDQVGVDVYVNAGSKMVSLQERLDSGIYDALLQFGKPIFIGEVGVTPAIGDRAQWIKDAWKSLAVDFTRVIAVSFFLECKSV--TRQWCLTNQEEINAFV 259

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A836CLT1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT1_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.520e-78
Identity = 119/211 (56.40%), Postives = 149/211 (70.62%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFVSGLRNFEDLTS 633
            IA+G  D +VRKLA+AIA KG  VWIR +HE N E TY W +YPY++ K+ATFKRAWR +V++YREE+APV FQL ++A+NP    DRTPF+ F PGR+Y D VGVD+YVN   R+ SLK +L D +Y+QL  FGKP+FIGE+S T    D+  WI +AW  LA+ FPR+  VSWFLE K     R W LH + EI AFV+GL  F  L S
Sbjct:  143 IANGRFDSSVRKLAKAIAKKGTVVWIRQLHEFNSENTYHWCVYPYSQRKIATFKRAWRHLVNIYREEKAPVLFQLTYIAQNP--HNDRTPFAHFYPGREYVDHVGVDIYVNPGSRLVSLKTRLQDNVYSQLSQFGKPIFIGEVSCTDKGLDKAKWIYDAWHDLAVYFPRITIVSWFLEDKGGK--RQWNLHTKKEISAFVNGLHEFRKLCS 349

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A835YJ96_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ96_9STRA)

HSP 1 Score: 231 bits (590), Expect = 2.980e-74
Identity = 113/200 (56.50%), Postives = 138/200 (69.00%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFV 600
            IA+G  D  VR LA+ IA KG  VWIR MHE N E TY W LYP+T  K+ATFKRA RR+V++YR+E+APVKFQL FMA+NP    D TPFS F PGR Y D VGVD+YVNA  R+ SLK +L D +Y+QL  F KP+FIGE+S T    D+  WI +AW  LAL FP++  ++WF E K     R W LH+ AE+ AFV
Sbjct:    1 IANGHFDSHVRDLAKEIAKKGRLVWIRQMHEFNSENTYQWCLYPFTSAKIATFKRALRRLVNIYRQEKAPVKFQLTFMAKNP--HNDGTPFSQFYPGRRYVDHVGVDLYVNAGSRLVSLKVRLEDDVYSQLTQFSKPIFIGELSCTDKGLDKAKWIHDAWNDLALHFPKISIINWFFEDKGGK--RQWNLHSPAEVKAFV 196

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A836CHN7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.420e-65
Identity = 110/219 (50.23%), Postives = 147/219 (67.12%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLE----------GKSPAPTRSWGLHNQAEIDAFVSGLRNFEDL 627
            IA+G  D AVRKLA+ I AKG+TVWIR MHE N E TYPW +YP+T  K+A FK+AW+RVV++YREE+APVKFQL + ARNP   K + P+S   PG  + D VGVDVYVNA  +  SLKE+L++ +Y+QL+ F KP+FIGEMSVT    D+P W ++AW  LA+ FP++  V++FLE             P P  ++  + +   +A  SGL  + DL
Sbjct:   90 IANGHYDGAVRKLAKDIRAKGKTVWIRFMHEFNYENTYPWCIYPFTDHKIAQFKKAWKRVVNIYREEKAPVKFQLCYQARNP--TKKQKPYSQLYPGDAFVDHVGVDVYVNAGSKQ-SLKERLDNNVYSQLVKFNKPIFIGEMSVTDVGTDKPKWFKQAWHDLAVHFPKITIVNFFLEIAATLVNTIFNAGPPPPLAYTYNGE---EALFSGLELYTDL 302

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A836CET3_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET3_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.940e-61
Identity = 105/209 (50.24%), Postives = 134/209 (64.11%), Query Frame = 1

Query:    1 IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKLATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVPDRPAWIREAWRSLAL-DFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFVSGLRNFED 624
            I DG  DD VR+L R I A GE VWIR +HE N  GTYPW +   +   +A FKRAWRR+VS+YRE  APV+FQ    A+NPG  K + P+S   PG D  D VGVD+Y+N   ++ SLK++L DG+Y+QL  FGKPVFIGE S T    D+  W+REAWR LA   F  +  V++FL  K P   R WGL+  AE+  FV+G R + +
Sbjct:   63 ILDGKFDDDVRRLGRDIKAGGEEVWIRQLHEFNYAGTYPWCI-DLSPASIALFKRAWRRIVSLYREVGAPVRFQWCLQAKNPG--KVQVPYSQLYPGDDAVDAVGVDLYINPGSKLVSLKQRLQDGVYSQLAAFGKPVFIGETSCTDEGLDKAGWMREAWRDLASPSFDSITTVNFFLVDKDPR--RWWGLNTAAEVKGFVAGYREYAE 266

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BLAST of jgi.p|Trimin1|165907 vs. uniprot
Match: A0A835YUE1_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.430e-36
Identity = 84/218 (38.53%), Postives = 117/218 (53.67%), Query Frame = 1

Query:   10 GACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWS-LYPYTREK---LATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDYFDQVGVDVYVNAAKRMPS--LKEKLNDGI---YAQLLWFGK-PVFIGEMSVTVSVPDRPAWIREAWRSLALDFPRVKYVSWFLEGK-SPAPTRSWGLHNQAEIDAFVSGLRNFEDLT 630
            G  DDA+R  A+    +G   W+R +HE NG+  YPW  LY Y  ++    +  + A+  V++++REE +PVKFQL   A N  G  D+ PFSAF PG D  D V +  Y N A   P     E    G    Y Q+      P+++ E + + S  D+PAWI +AW S+ALDFPRV  V+WFL  K +      W L+ +A++ AFV G      LT
Sbjct:    3 GEFDDALRAFAQETTVRGRGFWVRTLHEFNGDW-YPWGILYEYQGDRGNSRSQLRDAFAHVITLFREEGSPVKFQLDINANN--GKADKRPFSAFWPGTDGLDAVSITSY-NRAYSTPDHQYSESFAAGFADAYQQVSELTDLPIWVAETATSSSHTDKPAWILDAWESIALDFPRVVQVTWFLSNKVNEGYLTDWDLNTEADVRAFVDGFLLMRQLT 216

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|165907 vs. uniprot

BLAST of jgi.p|Trimin1|165907 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z2E4_9STRA	4.100e-156	100.00	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835ZIN4_9STRA	3.050e-138	93.63	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A836CH71_9STRA	6.780e-115	76.30	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835YSC6_9STRA	7.460e-85	59.72	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A836CC94_9STRA	1.140e-78	61.50	Glycoside hydrolase superfamily (Fragment) n=1 Tax...	[more]
A0A836CLT1_9STRA	1.520e-78	56.40	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835YJ96_9STRA	2.980e-74	56.50	Glycoside hydrolase superfamily (Fragment) n=1 Tax...	[more]
A0A836CHN7_9STRA	2.420e-65	50.23	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A836CET3_9STRA	4.940e-61	50.24	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835YUE1_9STRA	3.430e-36	38.53	Glycoside hydrolase superfamily (Fragment) n=1 Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_41	contig	Contig_41:854788..855423 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|165907\|e_gw1.41.93.1
CAZy	GH5,GH9
BRITE	ko00000,ko00001,ko01000
KEGG Reaction	R06200,R11307,R11308
KEGG Pathway	ko00500,ko01100,map00500,map01100
KEGG ko	ko:K01179
EC	3.2.1.4
GOs	GO:0003674,GO:0003824,GO:0004553,GO:0008810,GO:0016787,GO:0016798
Preferred name	celH
Description	Belongs to the glycosyl hydrolase 26 family
COG category	G
Max annot lvl	186801\|Clostridia
EggNOG OGs	COG4124@1\|root,COG4124@2\|Bacteria,1U8S3@1239\|Firmicutes,24CGR@186801\|Clostridia,36HBM@31979\|Clostridiaceae
Evalue	3e-15
Seed ortholog	272562.CA_C2556
Hectar predicted targeting category	other localisation
TranscriptId	166229
Track	FilteredModels1
ProteinId	165907

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|165907	gene_4487	Tribonema minus UTEX_B_3156	gene	Contig_41 854788..855423 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4487_1	exon_4487_1	Tribonema minus UTEX_B_3156	exon	Contig_41 854788..855423 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4487	CDS_4487	Tribonema minus UTEX_B_3156	CDS	Contig_41 854788..855423 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|165907	Trimin1\|165907\|e_gw1.41.93.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_41 854788..855423 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_41:854788..855423-
coding sequence from alignment at Contig_41:854788..855423-

spliced messenger RNA

>mRNA_4487 ID=mRNA_4487|Name=jgi.p|Trimin1|165907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_41:854788..855423- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGCCGACGGGGCGTGCGACGACGCCGTCCGGAAGCTGGCCCGGGCCAT
CGCCGCCAAGGGCGAGACCGTCTGGATCCGCATGATGCACGAGCTCAACG
GCGAGGGGACCTACCCCTGGAGCCTGTACCCCTACACCCGAGAGAAGCTG
GCGACCTTCAAGAGGGCCTGGCGCCGCGTCGTCTCCGTCTACAGGGAGGA
GAGGGCCCCCGTCAAGTTCCAGCTGGCCTTCATGGCCAGGAACCCGGGGG
GGGACAAGGACAGGACCCCCTTCTCCGCCTTCAACCCGGGCCGGGACTAC
TTCGACCAGGTGGGGGTCGACGTCTACGTCAACGCCGCCAAGCGCATGCC
CTCCCTCAAGGAGAAGCTGAACGACGGCATCTACGCGCAGCTCCTGTGGT
TCGGCAAGCCCGTCTTCATAGGGGAGATGTCCGTGACGGTGAGCGTGCCG
GACAGGCCGGCGTGGATCCGCGAGGCCTGGAGGTCCCTGGCCCTGGACTT
CCCCCGCGTCAAGTACGTGAGCTGGTTTCTCGAAGGTAAGTCGCCGGCCC
CCACGAGGTCGTGGGGGCTGCACAACCAGGCCGAGATAGACGCGTTCGTG
TCCGGCCTGCGCAACTTCGAGGACCTGACGTCGTGA

protein sequence of jgi.p|Trimin1|165907

>Trimin1|165907|e_gw1.41.93.1 ID=Trimin1|165907|e_gw1.41.93.1|Name=jgi.p|Trimin1|165907|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=212bp
IADGACDDAVRKLARAIAAKGETVWIRMMHELNGEGTYPWSLYPYTREKL
ATFKRAWRRVVSVYREERAPVKFQLAFMARNPGGDKDRTPFSAFNPGRDY
FDQVGVDVYVNAAKRMPSLKEKLNDGIYAQLLWFGKPVFIGEMSVTVSVP
DRPAWIREAWRSLALDFPRVKYVSWFLEGKSPAPTRSWGLHNQAEIDAFV
SGLRNFEDLTS*

mRNA from alignment at Contig_41:854788..855423-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4487 ID=mRNA_4487|Name=jgi.p|Trimin1|165907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_41:854788..855423- (Tribonema minus UTEX_B_3156 )
ATCGCCGACGGGGCGTGCGACGACGCCGTCCGGAAGCTGGCCCGGGCCAT
CGCCGCCAAGGGCGAGACCGTCTGGATCCGCATGATGCACGAGCTCAACG
GCGAGGGGACCTACCCCTGGAGCCTGTACCCCTACACCCGAGAGAAGCTG
GCGACCTTCAAGAGGGCCTGGCGCCGCGTCGTCTCCGTCTACAGGGAGGA
GAGGGCCCCCGTCAAGTTCCAGCTGGCCTTCATGGCCAGGAACCCGGGGG
GGGACAAGGACAGGACCCCCTTCTCCGCCTTCAACCCGGGCCGGGACTAC
TTCGACCAGGTGGGGGTCGACGTCTACGTCAACGCCGCCAAGCGCATGCC
CTCCCTCAAGGAGAAGCTGAACGACGGCATCTACGCGCAGCTCCTGTGGT
TCGGCAAGCCCGTCTTCATAGGGGAGATGTCCGTGACGGTGAGCGTGCCG
GACAGGCCGGCGTGGATCCGCGAGGCCTGGAGGTCCCTGGCCCTGGACTT
CCCCCGCGTCAAGTACGTGAGCTGGTTTCTCGAAGGTAAGTCGCCGGCCC
CCACGAGGTCGTGGGGGCTGCACAACCAGGCCGAGATAGACGCGTTCGTG
TCCGGCCTGCGCAACTTCGAGGACCTGACGTCGTGA

Coding sequence (CDS) from alignment at Contig_41:854788..855423-

>mRNA_4487 ID=mRNA_4487|Name=jgi.p|Trimin1|165907|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=636bp|location=Sequence derived from alignment at Contig_41:854788..855423- (Tribonema minus UTEX_B_3156 )
ATCGCCGACGGGGCGTGCGACGACGCCGTCCGGAAGCTGGCCCGGGCCAT
CGCCGCCAAGGGCGAGACCGTCTGGATCCGCATGATGCACGAGCTCAACG
GCGAGGGGACCTACCCCTGGAGCCTGTACCCCTACACCCGAGAGAAGCTG
GCGACCTTCAAGAGGGCCTGGCGCCGCGTCGTCTCCGTCTACAGGGAGGA
GAGGGCCCCCGTCAAGTTCCAGCTGGCCTTCATGGCCAGGAACCCGGGGG
GGGACAAGGACAGGACCCCCTTCTCCGCCTTCAACCCGGGCCGGGACTAC
TTCGACCAGGTGGGGGTCGACGTCTACGTCAACGCCGCCAAGCGCATGCC
CTCCCTCAAGGAGAAGCTGAACGACGGCATCTACGCGCAGCTCCTGTGGT
TCGGCAAGCCCGTCTTCATAGGGGAGATGTCCGTGACGGTGAGCGTGCCG
GACAGGCCGGCGTGGATCCGCGAGGCCTGGAGGTCCCTGGCCCTGGACTT
CCCCCGCGTCAAGTACGTGAGCTGGTTTCTCGAAGGTAAGTCGCCGGCCC
CCACGAGGTCGTGGGGGCTGCACAACCAGGCCGAGATAGACGCGTTCGTG
TCCGGCCTGCGCAACTTCGAGGACCTGACGTCGTGA