Trimin1|143180|gw1.41.83.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|143180
Unique NameTrimin1|143180|gw1.41.83.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length225
Homology
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A835YTE2_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE2_9STRA)

HSP 1 Score: 412 bits (1060), Expect = 3.820e-145
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV
Sbjct:    1 SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A835Z5P0_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P0_9STRA)

HSP 1 Score: 245 bits (625), Expect = 4.120e-79
Identity = 128/197 (64.97%), Postives = 140/197 (71.07%), Query Frame = 0
Query:   29 MGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            MGNTCFMNTALQCLSNC+PLTDYFL YDF+KEINA+N  G  GAVAEAYG LVNTLW       G+ G             L PSDFK+AID V+PHFQG+ QHDVHE+LAFLLDA+HEDLNRV                     AAAREAWRGYLLRNK I+VDLFQGQLRS+L C  C H SVTFDPFMYLSVP+
Sbjct:    1 MGNTCFMNTALQCLSNCIPLTDYFLGYDFKKEINATNPIGFKGAVAEAYGLLVNTLW------QGARGD-----------ALAPSDFKSAIDAVMPHFQGYAQHDVHEFLAFLLDAVHEDLNRV--------------------EAAAREAWRGYLLRNKPIIVDLFQGQLRSSLQCRRCLHTSVTFDPFMYLSVPM 160          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: D7G7E8_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E8_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.110e-57
Identity = 100/201 (49.75%), Postives = 123/201 (61.19%), Query Frame = 0
Query:   25 GLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            GL N+GNTCFMN+ALQCL NC  L DYFL +D+++EIN  N  GH G +A A+G L N +W                   +   +L P DFK  +   +P F G++Q DV E+LAFLLDA+HEDLNRV   +                   A +AW+GYL RN+SI+VDLFQGQLRSAL C  CG  SVTFDPFMYLSVP+
Sbjct:   25 GLQNLGNTCFMNSALQCLFNCEALADYFLGFDWKREINRGNFLGHKGLMASAFGSLANDMW------------------RSDKASLRPGDFKTQVGESMPLFAGYEQQDVQEFLAFLLDAVHEDLNRVP-NADRKYVEAKEAKEGEAEEMVAMQAWKGYLERNRSIIVDLFQGQLRSALQCSVCGRRSVTFDPFMYLSVPL 206          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A7S2Y964_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y964_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.610e-55
Identity = 98/198 (49.49%), Postives = 121/198 (61.11%), Query Frame = 0
Query:   29 MGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHG-GAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            MGNTCFMN++LQCLS  +PLTDYFL YD+++EIN  N  G G G +A AY  +++ LW      G S              ++ PS FK  +    P FQG+QQHD  E LAF+LD IHEDLNRV                       A EAW+ YLLRNKSIVVD+FQGQL+S LTC  CGH++V F+PFMYLS+P+
Sbjct:    1 MGNTCFMNSSLQCLSATIPLTDYFLGYDYKREINHDNPLGTGHGQLATAYANMLSNLW-----SGKSL-------------SIKPSKFKKQLGEFAPQFQGYQQHDAQELLAFMLDGIHEDLNRV----KQKPYIEDKDCTGENDEQDAMEAWKNYLLRNKSIVVDIFQGQLKSRLTCLVCGHINVRFEPFMYLSLPI 176          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A1Z5K1T7_FISSO (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1T7_FISSO)

HSP 1 Score: 189 bits (481), Expect = 3.540e-54
Identity = 99/231 (42.86%), Postives = 136/231 (58.87%), Query Frame = 0
Query:    2 NYDEVHELVLSRLSGPQYHRGL-------LGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            NY+ V + V S+    Q  RG+       +GLTN+GNTCF+N+++QCLS  +PLTDYFL YD+R EIN  N  G GG + +AY QL+  +W LG +                  T+ P  FKA ++   P F+G+ QHD  E+L+FLLD IHEDLNR+                       A EAW+ YL R+KS++VD+FQGQLRS + C +C H ++ F+PFMYLS+P+
Sbjct:   68 NYNHVSDAVASQFQEMQTARGISHLPIGVIGLTNLGNTCFLNSSIQCLSATIPLTDYFLGYDYRSEINHDNFLGTGGKLVKAYAQLMKDMW-LGRQ-----------------LTVAPVAFKAQLELFAPQFKGYHQHDAQEFLSFLLDGIHEDLNRI----KKKPYIEDKDCDGTSDEQDAIEAWKNYLCRDKSLIVDIFQGQLRSEVQCLKCRHKNIRFEPFMYLSLPI 276          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A7R9WIF9_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIF9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.210e-54
Identity = 107/239 (44.77%), Postives = 133/239 (55.65%), Query Frame = 0
Query:    1 SNYDEVHELVLSRLSGPQYHR---GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDE-----------CGHVSVTFDPFMYLSVPV 225
            S YD VH +VL+   G    +   GL+GL N+GNTCF+N++LQCLSN +PLTDYFL Y++RKEIN +N  G  G +  AY  LV  LW                  +    ++ PS FK+++D+  P FQG  QHD  E LAFLLD IHEDLNRV                       A  AW  YL RN+SIVVDLFQGQLRS + C             CGH +V F+PFMYLS+P+
Sbjct:  149 STYDHVHNVVLTTFEGQDVLKRRAGLVGLRNLGNTCFLNSSLQCLSNTIPLTDYFLGYNYRKEINYTNFLGSKGELVTAYAALVKNLW------------------MGDNKSIDPSIFKSSLDKFAPQFQGCNQHDTQELLAFLLDGIHEDLNRV----KKRPYIEDKDCDGTNDEGDAILAWENYLQRNRSIVVDLFQGQLRSTIDCCNSAKLKMDGSHGCGHKAVKFEPFMYLSLPI 365          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A812V5A1_SYMMI (USP8 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V5A1_SYMMI)

HSP 1 Score: 185 bits (469), Expect = 6.120e-54
Identity = 91/203 (44.83%), Postives = 124/203 (61.08%), Query Frame = 0
Query:   23 LLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            ++GL N+GNTCF+N++LQCL N +PL DYF  +D+++EIN SN  G GG +AE +G LV+T+W                      ++++P+ FK A+    P F G+ QHD  E LAFLLD +HEDLNRVV                      A E+W+ YLLRN+SI+VD+FQGQLR+ L C +C + S  FDPFMY+SVP+
Sbjct:    1 MIGLKNLGNTCFLNSSLQCLVNTIPLMDYFAGFDWKREINLSNPIGTGGVIAEQFGYLVDTMWDS-----------------RVSSSISPTSFKRALGTFWPQFSGYDQHDAQELLAFLLDGLHEDLNRVV----NKPYVEDVESDNREPAEVAVESWKAYLLRNRSIIVDIFQGQLRNVLCCLDCKYTSYKFDPFMYMSVPI 182          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A1E7FE03_9STRA (Cysteine proteinase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE03_9STRA)

HSP 1 Score: 182 bits (463), Expect = 5.110e-53
Identity = 90/204 (44.12%), Postives = 120/204 (58.82%), Query Frame = 0
Query:   22 GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            G++GL N+GNTCF+N++LQCLS  +PLTDYFL YD+R EIN  N  G GG ++ AY +L   +W                  + + + + P  FK  ++   P F G+ QHD  E LAFLLD IHEDLNRV                       A E W+ YL RNKS++VD+FQGQ+R+  TC  CGHV++ F+PFMYLS+P+
Sbjct:    1 GVIGLRNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINKKNFLGTGGRLSTAYAELTKQMW------------------LGSKSVVEPISFKKQLETFAPQFVGYHQHDAQELLAFLLDGIHEDLNRV----KERPYIEDHDCDGSNNEEDAVENWKNYLRRNKSLIVDMFQGQIRNTCTCLTCGHVNIRFEPFMYLSLPI 182          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A448ZB53_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZB53_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.830e-53
Identity = 98/232 (42.24%), Postives = 130/232 (56.03%), Query Frame = 0
Query:    1 SNYDEVHELVLSRLSGPQYHR-------GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            S Y  VH++V+  LS  +  +       G++GL N+GNTCF+N++LQCLS  +PLTDYFL YD+R EIN  N  G GG +  AY +L   LW                  + + + + P DFK  +    P F G+ QHD  E LAFLLD IHEDLNRV                       A E W+ YL RNKS+VVD+FQGQLR+   C +CG +++ F+PFMYLS+P+
Sbjct:  112 STYSHVHDIVMYNLSEAEISKHDQNVPMGVIGLKNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINKKNFLGTGGKLVTAYAELTKQLW------------------LGSKSVVEPIDFKKQLQTFAPQFLGYHQHDAQELLAFLLDGIHEDLNRV----KERPYVEDRDCDGSNDEEDAVENWKNYLRRNKSLVVDMFQGQLRNTCKCLKCGQINIRFEPFMYLSLPI 321          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: B7G036_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G036_PHATC)

HSP 1 Score: 182 bits (462), Expect = 9.600e-53
Identity = 96/204 (47.06%), Postives = 126/204 (61.76%), Query Frame = 0
Query:   22 GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
            G++GL N+GNTCF+N++LQCLS  +PLTDYFL YD+R EIN  N  G GG +A AY +L+  LW         A    G   ++A   + P+ FK++++   P F G  QHD  E L+FLLD IHEDLNR+                       A EAW+ YL R+KS+VVD+FQGQLR+ LTC  C HV+V F+PFMYLS+P+
Sbjct:    1 GVVGLRNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINQHNVLGTGGKLATAYAELMKELW-------LQAAPVSGYTKISA-RVVKPTRFKSSLESFAPQFLGTSQHDAQELLSFLLDGIHEDLNRI----PKKPYIEDRDCDGTHDERDAIEAWKNYLRRDKSLVVDIFQGQLRNTLTCLTCRHVNVRFEPFMYLSLPL 192          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTE2_9STRA3.820e-145100.00USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835Z5P0_9STRA4.120e-7964.97USP domain-containing protein n=1 Tax=Tribonema mi... [more]
D7G7E8_ECTSI1.110e-5749.75USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y964_9STRA1.610e-5549.49Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A1Z5K1T7_FISSO3.540e-5442.86Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Fist... [more]
A0A7R9WIF9_9STRA5.210e-5444.77Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseu... [more]
A0A812V5A1_SYMMI6.120e-5444.83USP8 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A1E7FE03_9STRA5.110e-5344.12Cysteine proteinase (Fragment) n=1 Tax=Fragilariop... [more]
A0A448ZB53_9STRA6.830e-5342.24Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseu... [more]
B7G036_PHATC9.600e-5347.06Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 25..216
e-value: 8.4E-40
score: 137.0
NoneNo IPR availableGENE3D3.90.70.10Cysteine proteinasescoord: 12..225
e-value: 7.3E-54
score: 185.0
NoneNo IPR availablePANTHERPTHR21646UBIQUITIN CARBOXYL-TERMINAL HYDROLASEcoord: 23..225
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 24..225
score: 29.502968
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 22..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:111380..113839 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143180mRNA_4398Tribonema minus UTEX_B_3156 mRNAContig_41 111380..113839 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|143180|gw1.41.83.1 ID=Trimin1|143180|gw1.41.83.1|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp
SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTD
YFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGGEGG
APAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLN
RVVVTSAAVDGAAAAAAARTREEAAAREAWRGYLLRNKSIVVDLFQGQLR
SALTCDECGHVSVTFDPFMYLSVPV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf